CsaV3_7G002660 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G002660
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionFAS1 domain-containing protein SELMODRAFT_448915
Locationchr7 : 2052092 .. 2052685 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACCCTGGTTTTTTGTTCTTCTCTTTTTAGTTGCAAAAGCTCAGGCTACGATGACCAACCAAACCGACCTGCAAGCAGCCATGGATGAGATGAGATTAAAATCTTACCATGGCTTTGTCATACTACTCAAGATCTTAAACAACTCCAATAAAACCTTGCAAAATTCAGATATAACCTTCTTCATGCCTACTGATCAGGAACTTTCTCAAGCTGATATCTCCCTGGACCAACTCGAAGAATTCGTTTTACGCCATTCTATCCCCACAACATTACTACTCAACAATCTTTCACACTTCCCGAATGGCAGCTTGGTTCCATCAAGCATCCCAAACAGAATGATTAAAATAACCAAAAGCAGAATGATGGGTGTGTGTGTAAACGATGCACTCATCGTCACCCCAAACGTGTGCTTAACCTCGTCTATAAGATGTCATGGTATAAGCACAGCAATTTCGTATGACAAAAATTCCTTTTCAGATACTTTACCTGCCAAGCAAAGTTTAGCTGAACCTATAGTTCAAAGGAATGAAAAGAAAGGGGCAAAATCTTTACCGTCTACAACAATGAAGAAGAACCGTTCACTGCATTGA

mRNA sequence

ATGACACCCTGGTTTTTTGTTCTTCTCTTTTTAGTTGCAAAAGCTCAGGCTACGATGACCAACCAAACCGACCTGCAAGCAGCCATGGATGAGATGAGATTAAAATCTTACCATGGCTTTGTCATACTACTCAAGATCTTAAACAACTCCAATAAAACCTTGCAAAATTCAGATATAACCTTCTTCATGCCTACTGATCAGGAACTTTCTCAAGCTGATATCTCCCTGGACCAACTCGAAGAATTCGTTTTACGCCATTCTATCCCCACAACATTACTACTCAACAATCTTTCACACTTCCCGAATGGCAGCTTGGTTCCATCAAGCATCCCAAACAGAATGATTAAAATAACCAAAAGCAGAATGATGGATACTTTACCTGCCAAGCAAAGTTTAGCTGAACCTATAGTTCAAAGGAATGAAAAGAAAGGGGCAAAATCTTTACCGTCTACAACAATGAAGAAGAACCGTTCACTGCATTGA

Coding sequence (CDS)

ATGACACCCTGGTTTTTTGTTCTTCTCTTTTTAGTTGCAAAAGCTCAGGCTACGATGACCAACCAAACCGACCTGCAAGCAGCCATGGATGAGATGAGATTAAAATCTTACCATGGCTTTGTCATACTACTCAAGATCTTAAACAACTCCAATAAAACCTTGCAAAATTCAGATATAACCTTCTTCATGCCTACTGATCAGGAACTTTCTCAAGCTGATATCTCCCTGGACCAACTCGAAGAATTCGTTTTACGCCATTCTATCCCCACAACATTACTACTCAACAATCTTTCACACTTCCCGAATGGCAGCTTGGTTCCATCAAGCATCCCAAACAGAATGATTAAAATAACCAAAAGCAGAATGATGGATACTTTACCTGCCAAGCAAAGTTTAGCTGAACCTATAGTTCAAAGGAATGAAAAGAAAGGGGCAAAATCTTTACCGTCTACAACAATGAAGAAGAACCGTTCACTGCATTGA

Protein sequence

MTPWFFVLLFLVAKAQATMTNQTDLQAAMDEMRLKSYHGFVILLKILNNSNKTLQNSDITFFMPTDQELSQADISLDQLEEFVLRHSIPTTLLLNNLSHFPNGSLVPSSIPNRMIKITKSRMMDTLPAKQSLAEPIVQRNEKKGAKSLPSTTMKKNRSLH
Homology
[Close]
BLAST of CsaV3_7G002660 vs. NCBI nr
Match: KGN43426.1 (hypothetical protein Csa_7G033340 [Cucumis sativus])

HSP 1 Score: 290.0 bits (741), Expect = 4.8e-75
Identity = 160/197 (81.22%), Postives = 160/197 (81.22%), Query Frame = 0 

Query: 1   MTPWFFVLLFLVAKAQATMTNQTDLQAAMDEMRLKSYHGFVILLKILNNSNKTLQNSDIT 60
           MTPWFFVLLFLVAKAQATMTNQTDLQAAMDEMRLKSYHGFVILLKILNNSNKTLQNSDIT
Sbjct: 1   MTPWFFVLLFLVAKAQATMTNQTDLQAAMDEMRLKSYHGFVILLKILNNSNKTLQNSDIT 60

Query: 61  FFMPTDQELSQADISLDQLEEFVLRHSIPTTLLLNNLSHFPNGSLVPSSIPNRMIKITKS 120
           FFMPTDQELSQADISLDQLEEFVLRHSIPTTLLLNNLSHFPNGSLVPSSIPNRMIKITKS
Sbjct: 61  FFMPTDQELSQADISLDQLEEFVLRHSIPTTLLLNNLSHFPNGSLVPSSIPNRMIKITKS 120

Query: 121 RMM-------------------------------------DTLPAKQSLAEPIVQRNEKK 161
           RMM                                     DTLPAKQSLAEPIVQRNEKK
Sbjct: 121 RMMGVCVNDALIVTPNVCLTSSIRCHGISTAISYDKNSFSDTLPAKQSLAEPIVQRNEKK 180

[Close]
BLAST of CsaV3_7G002660 vs. NCBI nr
Match: XP_004149424.1 (PREDICTED: uncharacterized protein LOC101220860 [Cucumis sativus] >KGN44367.1 hypothetical protein Csa_7G272100 [Cucumis sativus])

HSP 1 Score: 238.8 bits (608), Expect = 1.3e-59
Identity = 136/197 (69.04%), Postives = 142/197 (72.08%), Query Frame = 0 

Query: 1   MTPWFFVLLFLVAKAQATMTNQTDLQAAMDEMRLKSYHGFVILLKILNNSNKTLQNSDIT 60
           M PWFFVLLFLVAKA ATMTNQ DLQAAMDEMRLKSYHGF ILLKILN++ KTLQNS+IT
Sbjct: 1   MAPWFFVLLFLVAKAHATMTNQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNIT 60

Query: 61  FFMPTDQELSQADISLDQLEEFVLRHSIPTTLLLNNLSHFPNGSLVPSSIPNRMIKITKS 120
           FFMPTDQELSQADIS D+LEEFVL HSIPT LLLNNL HFPNG+LVPSSIPNRMI+IT  
Sbjct: 61  FFMPTDQELSQADISPDRLEEFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRITNC 120

Query: 121 RMM-------------------------------------DTLPAKQSLAEPIVQRNEKK 161
           R M                                     DTLPAKQS AE IVQRNE K
Sbjct: 121 RKMGVCLNNARIITPNVCLTSSIRCHGISTAISYDKTSFSDTLPAKQSSAEIIVQRNEIK 180

[Close]
BLAST of CsaV3_7G002660 vs. NCBI nr
Match: XP_008461950.1 (PREDICTED: uncharacterized protein LOC107990279 [Cucumis melo])

HSP 1 Score: 226.5 bits (576), Expect = 6.5e-56
Identity = 128/198 (64.65%), Postives = 139/198 (70.20%), Query Frame = 0 

Query: 1   MTPWFFVLLFLVAKAQATMTNQTDLQAAMDEMRLKSYHGFVILLKILNNSNKTLQNSDIT 60
           M PWFFVLLFL+ KA ATMTNQ DLQAAMD+MRLKSYHGF ILLKILN++ KTLQNS+IT
Sbjct: 1   MAPWFFVLLFLMTKAHATMTNQIDLQAAMDQMRLKSYHGFTILLKILNSTTKTLQNSNIT 60

Query: 61  FFMPTDQELSQADISLDQLEEFVLRHSIPTTLLLNNLSHFPNGSLVPSSIPNRMIKITKS 120
           FFMPTDQELSQADIS ++L++FVL HSIPT LLLNNL HFPNGSLVPSSIPNRMI+IT  
Sbjct: 61  FFMPTDQELSQADISPNRLKDFVLSHSIPTALLLNNLLHFPNGSLVPSSIPNRMIRITNC 120

Query: 121 RMM--------------------------------------DTLPAKQSLAEPIVQRNEK 161
           R M                                      DTLPAKQS A+ IVQRNE 
Sbjct: 121 RKMGVCVNNARIITPNVCLTSSIRCHGISSAISYDKTSAFSDTLPAKQSSADIIVQRNEM 180

[Close]
BLAST of CsaV3_7G002660 vs. NCBI nr
Match: XP_022989473.1 (uncharacterized protein LOC111486521 [Cucurbita maxima])

HSP 1 Score: 208.0 bits (528), Expect = 2.4e-50
Identity = 120/194 (61.86%), Postives = 130/194 (67.01%), Query Frame = 0 

Query: 1   MTPWFFVLLFLVAKAQATMTNQTDLQAAMDEMRLKSYHGFVILLKILNNSNKTLQNSDIT 60
           M  WFFVLLFLV  A+AT  NQTDL+AAMD+MR+KSYHGFVILLKILN+S+K L NSDIT
Sbjct: 1   MASWFFVLLFLVGNARATTFNQTDLRAAMDDMRMKSYHGFVILLKILNSSHKNLLNSDIT 60

Query: 61  FFMPTDQELSQADISLDQLEEFVLRHSIPTTLLLNNLSHFPNGSLVPSSIPNRMIKITKS 120
           FFMP DQELS+A IS D++EEFVL HSIPT L+LNNL HFPNGSLVPSSIPNRMI IT  
Sbjct: 61  FFMPADQELSRAAISPDRIEEFVLSHSIPTRLVLNNLLHFPNGSLVPSSIPNRMISITNC 120

Query: 121 RMMDTL----------------------------------PAKQSLAEPIVQRNEKKGAK 161
           R M                                       KQS AE IVQRNEKKGAK
Sbjct: 121 RKMGVCMNNAQIVTPNVCLNSAIRCHGISTTIAYDNTSFSDIKQSSAETIVQRNEKKGAK 180

[Close]
BLAST of CsaV3_7G002660 vs. NCBI nr
Match: XP_022135856.1 (uncharacterized protein LOC111007704 [Momordica charantia])

HSP 1 Score: 204.1 bits (518), Expect = 3.5e-49
Identity = 120/198 (60.61%), Postives = 131/198 (66.16%), Query Frame = 0 

Query: 1   MTPWFFVLLFLVAKAQATMTNQTDLQAAMDEMRLKSYHGFVILLKILNNSNKTLQNSDIT 60
           M PWF VLLFLV KA AT  +QTDL+AAMD+MR KSY+GFVILLKILN+SNK LQ S +T
Sbjct: 1   MAPWFLVLLFLVGKAHATAIDQTDLKAAMDDMRSKSYNGFVILLKILNSSNKALQYSGMT 60

Query: 61  FFMPTDQELSQADISLDQLEEFVLRHSIPTTLLLNNLSHFPNGSLVPSSIPNRMIKITKS 120
           FFMPTDQELS   IS D+LEEFVL HS+PT LLLNNL HFPNGSLVPSSIPNRMI IT  
Sbjct: 61  FFMPTDQELSHVAISPDRLEEFVLSHSVPTPLLLNNLLHFPNGSLVPSSIPNRMISITNC 120

Query: 121 RMM-------------------------------------DTLPAKQSLAEPIVQRNEKK 161
           R M                                     DTLPAKQS+ E  V++NEKK
Sbjct: 121 RKMGVCVNNARIITPNVCLNSSIRCHGISTTIAYDRVSYSDTLPAKQSMFEATVRQNEKK 180

[Close]
BLAST of CsaV3_7G002660 vs. TAIR10
Match: AT5G26730.1 (Fasciclin-like arabinogalactan family protein)

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-25
Identity = 55/100 (55.00%), Postives = 78/100 (78.00%), Query Frame = 0 

Query: 21  NQTDLQAAMDEMRLKSYHGFVILLKILNNSNKTLQNSDITFFMPTDQELSQADISLDQLE 80
           NQTDL +AM +MR +SY+GFVILL+ LN++N   +N+DITF MP+D ++S ADI+ + LE
Sbjct: 114 NQTDLISAMTDMRRQSYNGFVILLRFLNDTN-YFRNTDITFLMPSDNDISHADITPESLE 173

Query: 81  EFVLRHSIPTTLLLNNLSHFPNGSLVPSSIPNRMIKITKS 121
            F+L+H+IP  L++N++ HFPN +LVP S  +RM  ITKS
Sbjct: 174 TFILKHTIPAWLMINHMLHFPNRTLVPCSFSDRMFTITKS 212

[Close]
BLAST of CsaV3_7G002660 vs. TAIR10
Match: AT5G16920.1 (Fasciclin-like arabinogalactan family protein)

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-14
Identity = 42/108 (38.89%), Postives = 70/108 (64.81%), Query Frame = 0 

Query: 13  AKAQATMTNQTDLQAAMDEMRLKSYHGFVILLKILNNSNKTLQNSDITFFMPTDQELSQA 72
           A+    + N  +L  A++EM   +Y  FV+L+ +L + N     +++TF MP D+ LS +
Sbjct: 24  AQKSPHVPNNHELSIAIEEMEKANYFSFVMLINMLPSVNPRFL-ANVTFLMPKDKTLSTS 83

Query: 73  DI--SLDQLEEFVLRHSIPTTLLLNNLSHFPNGSLVPSSIPNRMIKIT 119
           +I    D + EF+LRHSIP++LL  +L+  PNGS+VPSS+P+  ++I+
Sbjct: 84  NIINQQDSVTEFLLRHSIPSSLLFEHLNLIPNGSIVPSSLPHYTLEIS 130

[Close]
BLAST of CsaV3_7G002660 vs. TrEMBL
Match: tr|A0A0A0K6H7|A0A0A0K6H7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G033340 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 3.2e-75
Identity = 160/197 (81.22%), Postives = 160/197 (81.22%), Query Frame = 0 

Query: 1   MTPWFFVLLFLVAKAQATMTNQTDLQAAMDEMRLKSYHGFVILLKILNNSNKTLQNSDIT 60
           MTPWFFVLLFLVAKAQATMTNQTDLQAAMDEMRLKSYHGFVILLKILNNSNKTLQNSDIT
Sbjct: 1   MTPWFFVLLFLVAKAQATMTNQTDLQAAMDEMRLKSYHGFVILLKILNNSNKTLQNSDIT 60

Query: 61  FFMPTDQELSQADISLDQLEEFVLRHSIPTTLLLNNLSHFPNGSLVPSSIPNRMIKITKS 120
           FFMPTDQELSQADISLDQLEEFVLRHSIPTTLLLNNLSHFPNGSLVPSSIPNRMIKITKS
Sbjct: 61  FFMPTDQELSQADISLDQLEEFVLRHSIPTTLLLNNLSHFPNGSLVPSSIPNRMIKITKS 120

Query: 121 RMM-------------------------------------DTLPAKQSLAEPIVQRNEKK 161
           RMM                                     DTLPAKQSLAEPIVQRNEKK
Sbjct: 121 RMMGVCVNDALIVTPNVCLTSSIRCHGISTAISYDKNSFSDTLPAKQSLAEPIVQRNEKK 180

[Close]
BLAST of CsaV3_7G002660 vs. TrEMBL
Match: tr|A0A0A0K7Q8|A0A0A0K7Q8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G272100 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 8.4e-60
Identity = 136/197 (69.04%), Postives = 142/197 (72.08%), Query Frame = 0 

Query: 1   MTPWFFVLLFLVAKAQATMTNQTDLQAAMDEMRLKSYHGFVILLKILNNSNKTLQNSDIT 60
           M PWFFVLLFLVAKA ATMTNQ DLQAAMDEMRLKSYHGF ILLKILN++ KTLQNS+IT
Sbjct: 1   MAPWFFVLLFLVAKAHATMTNQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNIT 60

Query: 61  FFMPTDQELSQADISLDQLEEFVLRHSIPTTLLLNNLSHFPNGSLVPSSIPNRMIKITKS 120
           FFMPTDQELSQADIS D+LEEFVL HSIPT LLLNNL HFPNG+LVPSSIPNRMI+IT  
Sbjct: 61  FFMPTDQELSQADISPDRLEEFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRITNC 120

Query: 121 RMM-------------------------------------DTLPAKQSLAEPIVQRNEKK 161
           R M                                     DTLPAKQS AE IVQRNE K
Sbjct: 121 RKMGVCLNNARIITPNVCLTSSIRCHGISTAISYDKTSFSDTLPAKQSSAEIIVQRNEIK 180

[Close]
BLAST of CsaV3_7G002660 vs. TrEMBL
Match: tr|A0A1S3CGC4|A0A1S3CGC4_CUCME (uncharacterized protein LOC107990279 OS=Cucumis melo OX=3656 GN=LOC107990279 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 4.3e-56
Identity = 128/198 (64.65%), Postives = 139/198 (70.20%), Query Frame = 0 

Query: 1   MTPWFFVLLFLVAKAQATMTNQTDLQAAMDEMRLKSYHGFVILLKILNNSNKTLQNSDIT 60
           M PWFFVLLFL+ KA ATMTNQ DLQAAMD+MRLKSYHGF ILLKILN++ KTLQNS+IT
Sbjct: 1   MAPWFFVLLFLMTKAHATMTNQIDLQAAMDQMRLKSYHGFTILLKILNSTTKTLQNSNIT 60

Query: 61  FFMPTDQELSQADISLDQLEEFVLRHSIPTTLLLNNLSHFPNGSLVPSSIPNRMIKITKS 120
           FFMPTDQELSQADIS ++L++FVL HSIPT LLLNNL HFPNGSLVPSSIPNRMI+IT  
Sbjct: 61  FFMPTDQELSQADISPNRLKDFVLSHSIPTALLLNNLLHFPNGSLVPSSIPNRMIRITNC 120

Query: 121 RMM--------------------------------------DTLPAKQSLAEPIVQRNEK 161
           R M                                      DTLPAKQS A+ IVQRNE 
Sbjct: 121 RKMGVCVNNARIITPNVCLTSSIRCHGISSAISYDKTSAFSDTLPAKQSSADIIVQRNEM 180

[Close]
BLAST of CsaV3_7G002660 vs. TrEMBL
Match: tr|K7M477|K7M477_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=102660889 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.3e-32
Identity = 75/121 (61.98%), Postives = 98/121 (80.99%), Query Frame = 0 

Query: 1   MTPWFFVLL--FLVAKAQATMT-NQTDLQAAMDEMRLKSYHGFVILLKILNNSNKTLQNS 60
           M  WF +LL  F + ++Q+TM+ NQTDLQAAM +MR +SY+GFVILLKILN+   +LQN+
Sbjct: 1   MAIWFVILLTFFAIGESQSTMSFNQTDLQAAMTDMRSRSYYGFVILLKILNSQPNSLQNN 60

Query: 61  DITFFMPTDQELSQADISLDQLEEFVLRHSIPTTLLLNNLSHFPNGSLVPSSIPNRMIKI 119
           D+TF MP D ELSQ  I+LDQL +F+L HSIPT L+L++L HFPNGS+VPSS+P+R+I I
Sbjct: 61  DLTFLMPNDDELSQFSIALDQLHDFILSHSIPTPLVLSHLLHFPNGSVVPSSVPSRVISI 120

[Close]
BLAST of CsaV3_7G002660 vs. TrEMBL
Match: tr|A0A151S043|A0A151S043_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_030232 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 7.4e-32
Identity = 76/123 (61.79%), Postives = 97/123 (78.86%), Query Frame = 0 

Query: 1   MTPWFFVL--LFLVAKAQATMT-NQTDLQAAMDEMRLKSYHGFVILLKILNNSNKTLQNS 60
           M  WF VL  LF + ++Q+T + NQTDLQAAM +MR +SY GFVILLKILN+   +LQN+
Sbjct: 1   MALWFMVLLALFAIGESQSTTSFNQTDLQAAMTDMRSRSYFGFVILLKILNSQPNSLQNN 60

Query: 61  DITFFMPTDQELSQADISLDQLEEFVLRHSIPTTLLLNNLSHFPNGSLVPSSIPNRMIKI 120
           D+TF MP D+ELS   I+LDQL +F+L HSIPT LLL++L HFPNGS+VPSS+P+R+I I
Sbjct: 61  DLTFLMPNDEELSHFSIALDQLHDFILSHSIPTPLLLSHLLHFPNGSVVPSSVPSRVISI 120

The following BLAST results are available for this feature:
BLAST of CsaV3_7G002660 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43426.14.8e-7581.22hypothetical protein Csa_7G033340 [Cucumis sativus][more]
XP_004149424.11.3e-5969.04PREDICTED: uncharacterized protein LOC101220860 [Cucumis sativus] >KGN44367.1 hy... [more]
XP_008461950.16.5e-5664.65PREDICTED: uncharacterized protein LOC107990279 [Cucumis melo][more]
XP_022989473.12.4e-5061.86uncharacterized protein LOC111486521 [Cucurbita maxima][more]
XP_022135856.13.5e-4960.61uncharacterized protein LOC111007704 [Momordica charantia][more]
BLAST of CsaV3_7G002660 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G26730.11.9e-2555.00Fasciclin-like arabinogalactan family protein[more]
AT5G16920.11.2e-1438.89Fasciclin-like arabinogalactan family protein[more]
BLAST of CsaV3_7G002660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G002660 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K6H7|A0A0A0K6H7_CUCSA3.2e-7581.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G033340 PE=4 SV=1[more]
tr|A0A0A0K7Q8|A0A0A0K7Q8_CUCSA8.4e-6069.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G272100 PE=4 SV=1[more]
tr|A0A1S3CGC4|A0A1S3CGC4_CUCME4.3e-5664.65uncharacterized protein LOC107990279 OS=Cucumis melo OX=3656 GN=LOC107990279 PE=... [more]
tr|K7M477|K7M477_SOYBN3.3e-3261.98Uncharacterized protein OS=Glycine max OX=3847 GN=102660889 PE=4 SV=1[more]
tr|A0A151S043|A0A151S043_CAJCA7.4e-3261.79Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_030232 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036378FAS1_dom_sf
IPR000782FAS1_domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G002660.1CsaV3_7G002660.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..160
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..160
NoneNo IPR availablePANTHERPTHR36069:SF2FASCICLIN-LIKE ARABINOGALACTAN FAMILY PROTEINcoord: 4..124
NoneNo IPR availablePANTHERPTHR36069FAMILY NOT NAMEDcoord: 4..124
IPR000782FAS1 domainPROSITEPS50213FAS1coord: 21..160
score: 8.408
IPR036378FAS1 domain superfamilySUPERFAMILYSSF82153FAS1 domaincoord: 37..108

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G002660CSPI07G02820Wild cucumber (PI 183967)cpicucB415
CsaV3_7G002660CmoCh11G018350Cucurbita moschata (Rifu)cmocucB0155
CsaV3_7G002660CmoCh19G008850Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G002660Cp4.1LG15g07060Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G002660Cp4.1LG04g04020Cucurbita pepo (Zucchini)cpecucB0863
CsaV3_7G002660Carg04156Silver-seed gourdcarcucB0232
CsaV3_7G002660Carg18070Silver-seed gourdcarcucB1114
CsaV3_7G002660Cla015675Watermelon (97103) v1cucwmB634
CsaV3_7G002660MELO3C024208Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G002660ClCG02G002710Watermelon (Charleston Gray)cucwcgB571
CsaV3_7G002660Lsi11G013590Bottle gourd (USVL1VR-Ls)cuclsiB529
CsaV3_7G002660MELO3C028604.2Melon (DHL92) v3.6.1cucmedB536
CsaV3_7G002660Cla97C02G029190Watermelon (97103) v2cucwmbB549
CsaV3_7G002660Bhi05G001278Wax gourdcucwgoB695
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G002660Cucumber (Chinese Long) v3cuccucB214
CsaV3_7G002660Silver-seed gourdcarcucB0386
CsaV3_7G002660Cucumber (Gy14) v2cgybcucB306
CsaV3_7G002660Cucumber (Gy14) v2cgybcucB348
CsaV3_7G002660Cucumber (Gy14) v1cgycucB116
CsaV3_7G002660Cucumber (Gy14) v1cgycucB160
CsaV3_7G002660Cucurbita maxima (Rimu)cmacucB0176
CsaV3_7G002660Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G002660Cucurbita maxima (Rimu)cmacucB0687
CsaV3_7G002660Cucurbita moschata (Rifu)cmocucB0671
CsaV3_7G002660Cucurbita pepo (Zucchini)cpecucB0367
CsaV3_7G002660Wild cucumber (PI 183967)cpicucB375
CsaV3_7G002660Bottle gourd (USVL1VR-Ls)cuclsiB521
CsaV3_7G002660Melon (DHL92) v3.5.1cucmeB534
CsaV3_7G002660Melon (DHL92) v3.6.1cucmedB521
CsaV3_7G002660Wax gourdcucwgoB703