CsaV3_6G009110 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G009110
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Zinc ion-binding protein
Location	chr6 : 7330771 .. 7331895 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACCATGCCCGAGTAACCTGTGGTCTACCTTTCTCTCTCTCTCTCTTTCTTCACTATATATAATAAGATTAATTAATTAAAAAAAAAAGATATAAACACCGACTCCAAAAACTTTCAAAGCCCACCACTTTTAATTTTCTTTTTTCTTTATATTTAAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCCTTTTTCTCCTGTTTGGTAGTTCATCTTCATCATCTCATTAAGTTTCTTTTTTTCTTTTCATTTTTAGTTTGGTAAAATTACAATAACAATAATGGTGGATCTTCAGATCGTTTGTTGCATGTGTGGCGATATCGGTTTCCCCGACAAGCTCTTCCACTGTAACAAGTGTCGCAACCGCTTCCAACATTCGTATATCTCTTCTGCTGCTCCTTTTCTTTTCTTTCTTTCTTTCTTTTTATCATCACATGCATGTTTTCCATCTTCAATTCAAATCCTTTTAGTTTAAATGGCGTGCCTTAAATTCTTGTTATCTCTTCTTTTTTTTTTTTTTAAATTGGAAATAGTAATTCTTAATAACTATCTTATATTGTCATCATTTTGTTGGATTTTGGGTTTCGTGCCAATTTTCCCACTCATAAAATAGCTAAATAACTAATTAAAATTAAATTGTTTCTGAAATAAAATTGTAAACATAGTACCGGAGCTAATTTGTTTTTTGTTTCTTGGAATCTAACAGCTACTGCAGCAATTACTATAGTGAATCGGCGGAGCCAATAGAGGTGTGTGATTGGTGTCAGTGTGAAGGACGGAGCACCTCCAGATCACATGGAAGCTCGTCCAGGAGACCGCCCTCCACTGGTACAAACGCCACCGGAATCATGACCCGCTCCGAGTATTCCGGCGACAAATTAATCAAGCATCATCATCATGATTCTCCCACCGAGAAGGGGAAGCACGGCGGCGCCGGTAGTACTTCGTCGCCCAGGCCGACGACGCGGAGGTACAAGCTTCTCAAGGACGTAATGTGCTGAAAAAAGGACGGTGTGAGCTAAAACGCAGCGTTTTGGGGTTCGTTTTATTTTCTCTCGATATATATAGTTCTCTTTTTCTTATTCTCA

mRNA sequence

ATGGTGGATCTTCAGATCGTTTGTTGCATGTGTGGCGATATCGGTTTCCCCGACAAGCTCTTCCACTGTAACAAGTGTCGCAACCGCTTCCAACATTCCTACTGCAGCAATTACTATAGTGAATCGGCGGAGCCAATAGAGGTGTGTGATTGGTGTCAGTGTGAAGGACGGAGCACCTCCAGATCACATGGAAGCTCGTCCAGGAGACCGCCCTCCACTGGTACAAACGCCACCGGAATCATGACCCGCTCCGAGTATTCCGGCGACAAATTAATCAAGCATCATCATCATGATTCTCCCACCGAGAAGGGGAAGCACGGCGGCGCCGGTAGTACTTCGTCGCCCAGGCCGACGACGCGGAGGTACAAGCTTCTCAAGGACGTAATGTGCTGA

Coding sequence (CDS)

ATGGTGGATCTTCAGATCGTTTGTTGCATGTGTGGCGATATCGGTTTCCCCGACAAGCTCTTCCACTGTAACAAGTGTCGCAACCGCTTCCAACATTCCTACTGCAGCAATTACTATAGTGAATCGGCGGAGCCAATAGAGGTGTGTGATTGGTGTCAGTGTGAAGGACGGAGCACCTCCAGATCACATGGAAGCTCGTCCAGGAGACCGCCCTCCACTGGTACAAACGCCACCGGAATCATGACCCGCTCCGAGTATTCCGGCGACAAATTAATCAAGCATCATCATCATGATTCTCCCACCGAGAAGGGGAAGCACGGCGGCGCCGGTAGTACTTCGTCGCCCAGGCCGACGACGCGGAGGTACAAGCTTCTCAAGGACGTAATGTGCTGA

Protein sequence

MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTSRSHGSSSRRPPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPTTRRYKLLKDVMC

Homology

[Close]

BLAST of CsaV3_6G009110 vs. NCBI nr
Match: XP_004140491.1 (PREDICTED: uncharacterized protein LOC101205257 [Cucumis sativus] >KGN46561.1 hypothetical protein Csa_6G108590 [Cucumis sativus])

HSP 1 Score: 282.3 bits (721), Expect = 8.2e-73
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS 60
           MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS
Sbjct: 1   MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS 60

Query: 61  RSHGSSSRRPPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPTTR 120
           RSHGSSSRRPPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPTTR
Sbjct: 61  RSHGSSSRRPPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPTTR 120

Query: 121 RYKLLKDVMC 131
           RYKLLKDVMC
Sbjct: 121 RYKLLKDVMC 130

[Close]

BLAST of CsaV3_6G009110 vs. NCBI nr
Match: XP_008467003.1 (PREDICTED: uncharacterized protein LOC103504413 [Cucumis melo])

HSP 1 Score: 263.8 bits (673), Expect = 3.0e-67
Identity = 126/132 (95.45%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRST- 60
           MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRST 
Sbjct: 1   MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS 60

Query: 61  SRSHG-SSSRRPPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPT 120
           SRSHG SSSRRPPSTGTNATGIM+RSEYS DKLIKHHH DSPTEKGKHGGAGST SPRPT
Sbjct: 61  SRSHGSSSSRRPPSTGTNATGIMSRSEYSSDKLIKHHHDDSPTEKGKHGGAGSTPSPRPT 120

Query: 121 TRRYKLLKDVMC 131
           TRRYKLLKDVMC
Sbjct: 121 TRRYKLLKDVMC 132

[Close]

BLAST of CsaV3_6G009110 vs. NCBI nr
Match: XP_022959271.1 (uncharacterized protein LOC111460301 [Cucurbita moschata])

HSP 1 Score: 227.6 bits (579), Expect = 2.4e-56
Identity = 108/132 (81.82%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 1   MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS 60
           MVDLQIVCC+CGD+GFPDKLF C KC NRFQHSYCSNYYSESAEPIEVCDWCQCEGRS+S
Sbjct: 1   MVDLQIVCCLCGDVGFPDKLFRCIKCSNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSSS 60

Query: 61  RSHGSSSRRPPSTGTNATGIMTRSEYSGDKLIKHHHHDS--PTEKGKHGGAGSTSSPRPT 120
           RSHG+SSRRPP T T   GIM+RS YSGDK IKHHH DS    +KGK GGAGS +SPRPT
Sbjct: 61  RSHGTSSRRPPPTATEPAGIMSRSVYSGDK-IKHHHEDSAATVDKGKQGGAGSVASPRPT 120

Query: 121 TRRYKLLKDVMC 131
           TRRYKLLKDVMC
Sbjct: 121 TRRYKLLKDVMC 131

[Close]

BLAST of CsaV3_6G009110 vs. NCBI nr
Match: XP_023548605.1 (uncharacterized protein LOC111807219 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.0 bits (567), Expect = 5.9e-55
Identity = 106/133 (79.70%), Postives = 113/133 (84.96%), Query Frame = 0


Query: 1   MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS 60
           MVDLQIVCC+CGD+GFPDKLF C KC NRFQHSYCSNYYSESAEPIEVCDWCQCEGRS+S
Sbjct: 1   MVDLQIVCCLCGDVGFPDKLFRCIKCSNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSSS 60

Query: 61  RSHGSSSRRPPSTGTNATGIMTRSEYSGDKLIKHHHHD---SPTEKGKHGGAGSTSSPRP 120
           RSHG+SSRRPP T T   GIM+RS YSGDK IKHHH D   +  +KGK G AGS  SPRP
Sbjct: 61  RSHGTSSRRPPPTATQPAGIMSRSVYSGDK-IKHHHEDAAAATVDKGKQGAAGSVPSPRP 120

Query: 121 TTRRYKLLKDVMC 131
           TTRRYKLLKDVMC
Sbjct: 121 TTRRYKLLKDVMC 132

[Close]

BLAST of CsaV3_6G009110 vs. NCBI nr
Match: XP_023006670.1 (uncharacterized protein LOC111499326 [Cucurbita maxima])

HSP 1 Score: 216.9 bits (551), Expect = 4.2e-53
Identity = 105/132 (79.55%), Postives = 111/132 (84.09%), Query Frame = 0


Query: 1   MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS 60
           MVDLQIVCC+CGD+GFPDKLF C KC NRFQHSYCSNYYSESAEPIEVCDWCQCEGRS+S
Sbjct: 1   MVDLQIVCCLCGDVGFPDKLFRCVKCSNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSSS 60

Query: 61  RSHGSSSRRPPSTGTNATGIMTRSEYSGDKLIKH--HHHDSPTEKGKHGGAGSTSSPRPT 120
           RSHG+SSRRPP T T A GIM+RS YSGDK IKH         +KGK GGAGS  SPRPT
Sbjct: 61  RSHGTSSRRPPPTATEAAGIMSRSVYSGDK-IKHXXXXXXXXVDKGKQGGAGSAPSPRPT 120

Query: 121 TRRYKLLKDVMC 131
           TRRYKLLKDVMC
Sbjct: 121 TRRYKLLKDVMC 131

[Close]

BLAST of CsaV3_6G009110 vs. TAIR10
Match: AT1G02070.1 (unknown protein)

HSP 1 Score: 141.7 bits (356), Expect = 3.1e-34
Identity = 72/132 (54.55%), Postives = 86/132 (65.15%), Query Frame = 0


Query: 4   LQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS--- 63
           ++ VCCMCGD+GF DKLF C  CR RFQHSYCSNYY + AEP E+CDWC+ + R  S   
Sbjct: 1   MERVCCMCGDVGFSDKLFSCGHCRCRFQHSYCSNYYGQFAEPTEICDWCRSDDRKLSNVA 60

Query: 64  RSHGSSSRRPPSTGTNATGIMTRSEYSGDKLIKHHH--HDSPTEKGKHGGAGSTSSPRPT 123
           R  GSSS++P S+         RSEYS    IKH++  HD    KG  G  G  +SP+  
Sbjct: 61  RHGGSSSKKPSSSVKYENDFSNRSEYSPGHRIKHNNNRHDQ-VAKGVAGDGGGVTSPKTA 120

Query: 124 TRRYKLLKDVMC 131
           TRRYKLLKDVMC
Sbjct: 121 TRRYKLLKDVMC 131

[Close]

BLAST of CsaV3_6G009110 vs. TAIR10
Match: AT3G60520.1 (unknown protein)

HSP 1 Score: 133.7 bits (335), Expect = 8.5e-32
Identity = 78/144 (54.17%), Postives = 89/144 (61.81%), Query Frame = 0


Query: 1   MVDLQ-IVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRS- 60
           MVDL+  VCCMCGD+GF DKLFHC+KC NRFQHSYCS+YY E A+PI++CDWCQCE +S 
Sbjct: 1   MVDLERRVCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYYKEQADPIKICDWCQCEAKSR 60

Query: 61  TSRSH---GSSSRRPPSTGTNATGIMTRSEYSG-DKLIKHHHHDSPT--------EKGKH 120
           T   H   G SS+R             RSEYS     IK    +  T        +KGK 
Sbjct: 61  TGAKHGVNGGSSKR-----------SYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKT 120

Query: 121 GGAGSTSSPRPTTRRYKLLKDVMC 131
           G      SPRP TRRYKLLKDVMC
Sbjct: 121 G----VPSPRPATRRYKLLKDVMC 129

[Close]

BLAST of CsaV3_6G009110 vs. TrEMBL
Match: tr|A0A0A0KFQ0|A0A0A0KFQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108590 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 5.4e-73
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS 60
           MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS
Sbjct: 1   MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS 60

Query: 61  RSHGSSSRRPPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPTTR 120
           RSHGSSSRRPPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPTTR
Sbjct: 61  RSHGSSSRRPPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPTTR 120

Query: 121 RYKLLKDVMC 131
           RYKLLKDVMC
Sbjct: 121 RYKLLKDVMC 130

[Close]

BLAST of CsaV3_6G009110 vs. TrEMBL
Match: tr|A0A1S3CSH8|A0A1S3CSH8_CUCME (uncharacterized protein LOC103504413 OS=Cucumis melo OX=3656 GN=LOC103504413 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 2.0e-67
Identity = 126/132 (95.45%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRST- 60
           MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRST 
Sbjct: 1   MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS 60

Query: 61  SRSHG-SSSRRPPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPT 120
           SRSHG SSSRRPPSTGTNATGIM+RSEYS DKLIKHHH DSPTEKGKHGGAGST SPRPT
Sbjct: 61  SRSHGSSSSRRPPSTGTNATGIMSRSEYSSDKLIKHHHDDSPTEKGKHGGAGSTPSPRPT 120

Query: 121 TRRYKLLKDVMC 131
           TRRYKLLKDVMC
Sbjct: 121 TRRYKLLKDVMC 132

[Close]

BLAST of CsaV3_6G009110 vs. TrEMBL
Match: tr|A0A1R3K0N1|A0A1R3K0N1_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_12464 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.6e-43
Identity = 88/130 (67.69%), Postives = 101/130 (77.69%), Query Frame = 0


Query: 1   MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS 60
           MVDLQ VCCMCGD+GFPDKLF CNKCR+RFQHSYCSNYYSE AEPI++CDWCQ E R++ 
Sbjct: 1   MVDLQTVCCMCGDVGFPDKLFRCNKCRHRFQHSYCSNYYSEFAEPIQLCDWCQSEERNS- 60

Query: 61  RSHGSSSRRPPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPTTR 120
             HGSSS++  S+  + TGI  RSEYSGDK+ +H   +   EK K  G   T SPRPTTR
Sbjct: 61  -KHGSSSKKSSSSVAHGTGITNRSEYSGDKIKQHDRDEGTAEKAKSSG---TPSPRPTTR 120

Query: 121 RYKLLKDVMC 131
           RYKLLKDVMC
Sbjct: 121 RYKLLKDVMC 125

[Close]

BLAST of CsaV3_6G009110 vs. TrEMBL
Match: tr|A0A061DUE3|A0A061DUE3_THECC (Late cornified envelope protein 1E OS=Theobroma cacao OX=3641 GN=TCM_005618 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 5.8e-43
Identity = 94/130 (72.31%), Postives = 100/130 (76.92%), Query Frame = 0


Query: 1   MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS 60
           MVDLQ VCCMCGD+GFPDKLF CNKCR+RFQHSYCSNYYSE AEPIE+CDWCQ E RS+ 
Sbjct: 1   MVDLQTVCCMCGDVGFPDKLFRCNKCRHRFQHSYCSNYYSELAEPIELCDWCQSEERSS- 60

Query: 61  RSHGSSSRRPPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPTTR 120
             HGSSS++  STG N TGI  RSEYSG   IK    D   EKGK  G   T SPRPTTR
Sbjct: 61  -RHGSSSKK-SSTG-NETGITNRSEYSGTDKIKQQDRDESAEKGKSSG---TPSPRPTTR 120

Query: 121 RYKLLKDVMC 131
           RYKLLKDVMC
Sbjct: 121 RYKLLKDVMC 123

[Close]

BLAST of CsaV3_6G009110 vs. TrEMBL
Match: tr|A0A2P5C9J2|A0A2P5C9J2_9ROSA (Zinc finger, FYVE/PHD-type OS=Trema orientalis OX=63057 GN=TorRG33x02_293060 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.4e-41
Identity = 88/130 (67.69%), Postives = 102/130 (78.46%), Query Frame = 0


Query: 1   MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS 60
           MVDLQ VCCMCGD+GFPDKLF CNKCR+RFQHSYCSNYYSE AEP EVCDWCQ EG+S +
Sbjct: 1   MVDLQTVCCMCGDVGFPDKLFRCNKCRHRFQHSYCSNYYSEYAEPTEVCDWCQSEGKS-A 60

Query: 61  RSHGSSSRRPPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPTTR 120
           RS+G SS++  S   + +G+ +RSEYSG+K IK H  +   EKGK+       SPRPTTR
Sbjct: 61  RSYGGSSKK--SMAASESGVSSRSEYSGEK-IKQHDREESAEKGKN--PSGAPSPRPTTR 120

Query: 121 RYKLLKDVMC 131
           RYKLLKDVMC
Sbjct: 121 RYKLLKDVMC 124

The following BLAST results are available for this feature:

BLAST of CsaV3_6G009110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140491.1	8.2e-73	100.00	PREDICTED: uncharacterized protein LOC101205257 [Cucumis sativus] >KGN46561.1 hy...	[more]
XP_008467003.1	3.0e-67	95.45	PREDICTED: uncharacterized protein LOC103504413 [Cucumis melo]	[more]
XP_022959271.1	2.4e-56	81.82	uncharacterized protein LOC111460301 [Cucurbita moschata]	[more]
XP_023548605.1	5.9e-55	79.70	uncharacterized protein LOC111807219 [Cucurbita pepo subsp. pepo]	[more]
XP_023006670.1	4.2e-53	79.55	uncharacterized protein LOC111499326 [Cucurbita maxima]	[more]

BLAST of CsaV3_6G009110 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G02070.1	3.1e-34	54.55	unknown protein	[more]
AT3G60520.1	8.5e-32	54.17	unknown protein	[more]

BLAST of CsaV3_6G009110 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G009110 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KFQ0\|A0A0A0KFQ0_CUCSA	5.4e-73	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108590 PE=4 SV=1	[more]
tr\|A0A1S3CSH8\|A0A1S3CSH8_CUCME	2.0e-67	95.45	uncharacterized protein LOC103504413 OS=Cucumis melo OX=3656 GN=LOC103504413 PE=...	[more]
tr\|A0A1R3K0N1\|A0A1R3K0N1_9ROSI	2.6e-43	67.69	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_12464 PE=4 SV=1	[more]
tr\|A0A061DUE3\|A0A061DUE3_THECC	5.8e-43	72.31	Late cornified envelope protein 1E OS=Theobroma cacao OX=3641 GN=TCM_005618 PE=4...	[more]
tr\|A0A2P5C9J2\|A0A2P5C9J2_9ROSA	1.4e-41	67.69	Zinc finger, FYVE/PHD-type OS=Trema orientalis OX=63057 GN=TorRG33x02_293060 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G009110.1	CsaV3_6G009110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..121
None	No IPR available	PANTHER	PTHR33779:SF2	SUBFAMILY NOT NAMED	coord: 1..130
None	No IPR available	PANTHER	PTHR33779	FAMILY NOT NAMED	coord: 1..130

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G009110	CSPI06G08740	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G009110	Cucsa.120640	Cucumber (Gy14) v1	cgycucB159
CsaV3_6G009110	CmaCh17G004910	Cucurbita maxima (Rimu)	cmacucB0451
CsaV3_6G009110	CmaCh08G008610	Cucurbita maxima (Rimu)	cmacucB1069
CsaV3_6G009110	CmoCh17G004630	Cucurbita moschata (Rifu)	cmocucB0444
CsaV3_6G009110	CmoCh08G008300	Cucurbita moschata (Rifu)	cmocucB1052
CsaV3_6G009110	Cp4.1LG12g04160	Cucurbita pepo (Zucchini)	cpecucB0176
CsaV3_6G009110	Cp4.1LG17g03870	Cucurbita pepo (Zucchini)	cpecucB0410
CsaV3_6G009110	CsGy6G008840	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G009110	Carg13871	Silver-seed gourd	carcucB0638
CsaV3_6G009110	Carg26662	Silver-seed gourd	carcucB0938
CsaV3_6G009110	ClCG06G002990	Watermelon (Charleston Gray)	cucwcgB497
CsaV3_6G009110	Lsi09G016320	Bottle gourd (USVL1VR-Ls)	cuclsiB424
CsaV3_6G009110	Cla97C06G112380	Watermelon (97103) v2	cucwmbB487
CsaV3_6G009110	Bhi12G001916	Wax gourd	cucwgoB562

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G009110	Melon (DHL92) v3.5.1	cucmeB446
CsaV3_6G009110	Melon (DHL92) v3.6.1	cucmedB438
CsaV3_6G009110	Watermelon (97103) v1	cucwmB570