Carg13871 (gene) Silver-seed gourd

NameCarg13871
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionZinc ion-binding protein
LocationCucurbita_argyrosperma_scaffold_042 : 425287 .. 425900 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGCTGGGTCGCATCTTGATTTCATTTTAGAAGCATGGTGGATGTTCAAATTGTTTGCTGCATGTGCGGCGACATCGGCTTCCCTGACAAGCTCTTCCGCTGCAACCACTGCCGCACCCGATTTCAACATTCGTATGTCTCTGCTTTTCCTTCTTCCATATTCCATGCAATATCAATTAATTTTGAGTGTTTTGCTTCAAAATCTGGCAGCTATTGCAGTAATTACTACACTGAATTGGGTCGCGCCGACCCAATTCAGGTCTGTGATTGGTGCCGGTGTGAAGGTCGTACTTCCTCCTCCTCCAGATCACATGGAACCTCCTCCAAGAGACCGCCGCCCACCGGTGAGAGAATCAAGCAACACCATGAAGATGCCTCCTCCTCCGTTGGTGAGAAGGGGAAACACGGCACCGCGGGTGGCGTTCCGTCGCCCAAGCCCACCACACGCAGGTACAAGCTTCTGAAGGACGTAATGTGCTGAAAAAGAGGGCGGTGAATGGGGTTCCTTTAATTTTCTCAAATCTTAAATATTATTATATAGACATCGTATATATAATATTATAGTTTATAATATAGGTTGCTTTTGAGTGTGCGTGGGTTTATATTGTCTTATT

mRNA sequence

TTGCTGGGTCGCATCTTGATTTCATTTTAGAAGCATGGTGGATGTTCAAATTGTTTGCTGCATGTGCGGCGACATCGGCTTCCCTGACAAGCTCTTCCGCTGCAACCACTGCCGCACCCGATTTCAACATTCCTATTGCAGTAATTACTACACTGAATTGGGTCGCGCCGACCCAATTCAGGTCTGTGATTGGTGCCGGTGTGAAGGTCGTACTTCCTCCTCCTCCAGATCACATGGAACCTCCTCCAAGAGACCGCCGCCCACCGGTGAGAGAATCAAGCAACACCATGAAGATGCCTCCTCCTCCGTTGGTGAGAAGGGGAAACACGGCACCGCGGGTGGCGTTCCGTCGCCCAAGCCCACCACACGCAGGTACAAGCTTCTGAAGGACGTAATGTGCTGAAAAAGAGGGCGGTGAATGGGGTTCCTTTAATTTTCTCAAATCTTAAATATTATTATATAGACATCGTATATATAATATTATAGTTTATAATATAGGTTGCTTTTGAGTGTGCGTGGGTTTATATTGTCTTATT

Coding sequence (CDS)

ATGGTGGATGTTCAAATTGTTTGCTGCATGTGCGGCGACATCGGCTTCCCTGACAAGCTCTTCCGCTGCAACCACTGCCGCACCCGATTTCAACATTCCTATTGCAGTAATTACTACACTGAATTGGGTCGCGCCGACCCAATTCAGGTCTGTGATTGGTGCCGGTGTGAAGGTCGTACTTCCTCCTCCTCCAGATCACATGGAACCTCCTCCAAGAGACCGCCGCCCACCGGTGAGAGAATCAAGCAACACCATGAAGATGCCTCCTCCTCCGTTGGTGAGAAGGGGAAACACGGCACCGCGGGTGGCGTTCCGTCGCCCAAGCCCACCACACGCAGGTACAAGCTTCTGAAGGACGTAATGTGCTGA

Protein sequence

MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRTSSSSRSHGTSSKRPPPTGERIKQHHEDASSSVGEKGKHGTAGGVPSPKPTTRRYKLLKDVMC
BLAST of Carg13871 vs. NCBI nr
Match: XP_022964360.1 (uncharacterized protein LOC111464393 [Cucurbita moschata])

HSP 1 Score: 266.2 bits (679), Expect = 5.6e-68
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0

Query: 1   MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT 60
           MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT
Sbjct: 1   MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT 60

Query: 61  SSSSRSHGTSSKRPPPTGERIKQHHEDASSSVGEKGKHGTAGGVPSPKPTTRRYKLLKDV 120
           SSSSRSHGTSSKRPPPTGERIKQHHEDASSSVGEKGKHGTAGGVPSPKPTTRRYKLLKDV
Sbjct: 61  SSSSRSHGTSSKRPPPTGERIKQHHEDASSSVGEKGKHGTAGGVPSPKPTTRRYKLLKDV 120

Query: 121 MC 123
           MC
Sbjct: 121 MC 122

BLAST of Carg13871 vs. NCBI nr
Match: XP_023000074.1 (uncharacterized protein LOC111494376 [Cucurbita maxima])

HSP 1 Score: 240.4 bits (612), Expect = 3.3e-60
Identity = 113/123 (91.87%), Postives = 114/123 (92.68%), Query Frame = 0

Query: 1   MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT 60
           MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT
Sbjct: 1   MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT 60

Query: 61  S-SSSRSHGTSSKRPPPTGERIKQHHEDASSSVGEKGKHGTAGGVPSPKPTTRRYKLLKD 120
           S SSSRSHGT        GERIKQHHEDASSSVGEKGKHGTAGGVPSP+PTTRRYKLLKD
Sbjct: 61  SASSSRSHGTXXXXXXXXGERIKQHHEDASSSVGEKGKHGTAGGVPSPRPTTRRYKLLKD 120

Query: 121 VMC 123
           VMC
Sbjct: 121 VMC 123

BLAST of Carg13871 vs. NCBI nr
Match: XP_023514313.1 (uncharacterized protein LOC111778615 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.9 bits (507), Expect = 5.0e-48
Identity = 95/122 (77.87%), Postives = 95/122 (77.87%), Query Frame = 0

Query: 1   MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT 60
           MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT
Sbjct: 1   MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT 60

Query: 61  SSSSRSHGTSSKRPPPTGERIKQHHEDASSSVGEKGKHGTAGGVPSPKPTTRRYKLLKDV 120
           SS                           SSVGEKGKHGTAGGVPSPKPTTRRYKLLKDV
Sbjct: 61  SSXXXXXXXXXXXXXXXXXXXXXXXXXXXSSVGEKGKHGTAGGVPSPKPTTRRYKLLKDV 120

Query: 121 MC 123
           MC
Sbjct: 121 MC 122

BLAST of Carg13871 vs. NCBI nr
Match: XP_023548605.1 (uncharacterized protein LOC111807219 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.7 bits (491), Expect = 3.6e-46
Identity = 92/136 (67.65%), Postives = 107/136 (78.68%), Query Frame = 0

Query: 1   MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT 60
           MVD+QIVCC+CGD+GFPDKLFRC  C  RFQHSYCSNYY+E   A+PI+VCDWC+CEGR 
Sbjct: 1   MVDLQIVCCLCGDVGFPDKLFRCIKCSNRFQHSYCSNYYSE--SAEPIEVCDWCQCEGR- 60

Query: 61  SSSSRSHGTSSKRPPPT--------------GERIKQHHEDASSSVGEKGKHGTAGGVPS 120
            SSSRSHGTSS+RPPPT              G++IK HHEDA+++  +KGK G AG VPS
Sbjct: 61  -SSSRSHGTSSRRPPPTATQPAGIMSRSVYSGDKIKHHHEDAAAATVDKGKQGAAGSVPS 120

Query: 121 PKPTTRRYKLLKDVMC 123
           P+PTTRRYKLLKDVMC
Sbjct: 121 PRPTTRRYKLLKDVMC 132

BLAST of Carg13871 vs. NCBI nr
Match: XP_022959271.1 (uncharacterized protein LOC111460301 [Cucurbita moschata])

HSP 1 Score: 187.2 bits (474), Expect = 3.3e-44
Identity = 91/136 (66.91%), Postives = 107/136 (78.68%), Query Frame = 0

Query: 1   MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT 60
           MVD+QIVCC+CGD+GFPDKLFRC  C  RFQHSYCSNYY+E   A+PI+VCDWC+CEGR 
Sbjct: 1   MVDLQIVCCLCGDVGFPDKLFRCIKCSNRFQHSYCSNYYSE--SAEPIEVCDWCQCEGR- 60

Query: 61  SSSSRSHGTSSKRPPPT--------------GERIKQHHEDASSSVGEKGKHGTAGGVPS 120
            SSSRSHGTSS+RPPPT              G++IK HHED++++V +KGK G AG V S
Sbjct: 61  -SSSRSHGTSSRRPPPTATEPAGIMSRSVYSGDKIKHHHEDSAATV-DKGKQGGAGSVAS 120

Query: 121 PKPTTRRYKLLKDVMC 123
           P+PTTRRYKLLKDVMC
Sbjct: 121 PRPTTRRYKLLKDVMC 131

BLAST of Carg13871 vs. TAIR10
Match: AT1G02070.1 (unknown protein)

HSP 1 Score: 132.1 bits (331), Expect = 2.3e-31
Identity = 69/132 (52.27%), Postives = 80/132 (60.61%), Query Frame = 0

Query: 7   VCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRTSSSSRS 66
           VCCMCGD+GF DKLF C HCR RFQHSYCSNYY +   A+P ++CDWCR + R  S+   
Sbjct: 4   VCCMCGDVGFSDKLFSCGHCRCRFQHSYCSNYYGQF--AEPTEICDWCRSDDRKLSNVAR 63

Query: 67  HGTSSKRPPPT----------------GERIKQHHEDASSSVGEKGKHGTAGGVPSPKPT 123
           HG SS + P +                G RIK H+ +    V  KG  G  GGV SPK  
Sbjct: 64  HGGSSSKKPSSSVKYENDFSNRSEYSPGHRIK-HNNNRHDQVA-KGVAGDGGGVTSPKTA 123

BLAST of Carg13871 vs. TAIR10
Match: AT3G60520.1 (unknown protein)

HSP 1 Score: 127.5 bits (319), Expect = 5.7e-30
Identity = 73/135 (54.07%), Postives = 90/135 (66.67%), Query Frame = 0

Query: 1   MVDVQ-IVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCE-- 60
           MVD++  VCCMCGD+GF DKLF C+ C  RFQHSYCS+YY E  +ADPI++CDWC+CE  
Sbjct: 1   MVDLERRVCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYYKE--QADPIKICDWCQCEAK 60

Query: 61  GRTSSSSRSHGTSSKRP-----PPTGERIKQH--HEDASSSV---GEKGKHGTAGGVPSP 120
            RT +    +G SSKR           +IKQ   ++  SSS+    +KGK     GVPSP
Sbjct: 61  SRTGAKHGVNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGK----TGVPSP 120

Query: 121 KPTTRRYKLLKDVMC 123
           +P TRRYKLLKDVMC
Sbjct: 121 RPATRRYKLLKDVMC 129

BLAST of Carg13871 vs. TrEMBL
Match: tr|A0A1S3CSH8|A0A1S3CSH8_CUCME (uncharacterized protein LOC103504413 OS=Cucumis melo OX=3656 GN=LOC103504413 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 5.4e-43
Identity = 92/138 (66.67%), Postives = 105/138 (76.09%), Query Frame = 0

Query: 1   MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT 60
           MVD+QIVCCMCGDIGFPDKLF CN CR RFQHSYCSNYY+E   A+PI+VCDWC+CEGR 
Sbjct: 1   MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSE--SAEPIEVCDWCQCEGR- 60

Query: 61  SSSSRSHG-TSSKRPPPTG---------------ERIKQHHEDASSSVGEKGKHGTAGGV 120
           S+SSRSHG +SS+RPP TG               + IK HH+D+ +   EKGKHG AG  
Sbjct: 61  STSSRSHGSSSSRRPPSTGTNATGIMSRSEYSSDKLIKHHHDDSPT---EKGKHGGAGST 120

Query: 121 PSPKPTTRRYKLLKDVMC 123
           PSP+PTTRRYKLLKDVMC
Sbjct: 121 PSPRPTTRRYKLLKDVMC 132

BLAST of Carg13871 vs. TrEMBL
Match: tr|A0A0A0KFQ0|A0A0A0KFQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108590 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.2e-42
Identity = 90/137 (65.69%), Postives = 102/137 (74.45%), Query Frame = 0

Query: 1   MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT 60
           MVD+QIVCCMCGDIGFPDKLF CN CR RFQHSYCSNYY+E   A+PI+VCDWC+CEGR 
Sbjct: 1   MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSE--SAEPIEVCDWCQCEGR- 60

Query: 61  SSSSRSHGTSSKRPPPTG---------------ERIKQHHEDASSSVGEKGKHGTAGGVP 120
            S+SRSHG+SS+RPP TG               + IK HH D+ +   EKGKHG AG   
Sbjct: 61  -STSRSHGSSSRRPPSTGTNATGIMTRSEYSGDKLIKHHHHDSPT---EKGKHGGAGSTS 120

Query: 121 SPKPTTRRYKLLKDVMC 123
           SP+PTTRRYKLLKDVMC
Sbjct: 121 SPRPTTRRYKLLKDVMC 130

BLAST of Carg13871 vs. TrEMBL
Match: tr|W9QSM3|W9QSM3_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021784 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 8.4e-36
Identity = 82/137 (59.85%), Postives = 96/137 (70.07%), Query Frame = 0

Query: 1   MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT 60
           MVD+Q VCCMCGD+GFPDKLFRCN CR RFQHSYCSNYY+E   A+P+QVCDWC+ EG+ 
Sbjct: 1   MVDLQTVCCMCGDVGFPDKLFRCNKCRHRFQHSYCSNYYSEY--AEPVQVCDWCQSEGKL 60

Query: 61  SSSSRSHGTSSK-------------RPPPTGERIKQH--HEDASSSVGEKGKHGTAGGVP 120
           SS    HG+SSK             R   +G++IKQH   ED   S  +KGK+    G P
Sbjct: 61  SS---RHGSSSKKSVTVGGESGVSNRSEYSGDKIKQHVDREDGGGSGDQKGKN--PSGAP 120

Query: 121 SPKPTTRRYKLLKDVMC 123
           SP+PTTRRYKLLKDVMC
Sbjct: 121 SPRPTTRRYKLLKDVMC 130

BLAST of Carg13871 vs. TrEMBL
Match: tr|A0A2P5C9J2|A0A2P5C9J2_9ROSA (Zinc finger, FYVE/PHD-type OS=Trema orientalis OX=63057 GN=TorRG33x02_293060 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 7.1e-35
Identity = 81/134 (60.45%), Postives = 96/134 (71.64%), Query Frame = 0

Query: 1   MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT 60
           MVD+Q VCCMCGD+GFPDKLFRCN CR RFQHSYCSNYY+E   A+P +VCDWC+ EG+ 
Sbjct: 1   MVDLQTVCCMCGDVGFPDKLFRCNKCRHRFQHSYCSNYYSEY--AEPTEVCDWCQSEGK- 60

Query: 61  SSSSRSHGTSSK------------RPPPTGERIKQHHEDASSSVGEKGKHGTAGGVPSPK 120
             S+RS+G SSK            R   +GE+IKQH  + S+   EKGK+    G PSP+
Sbjct: 61  --SARSYGGSSKKSMAASESGVSSRSEYSGEKIKQHDREESA---EKGKN--PSGAPSPR 120

Query: 121 PTTRRYKLLKDVMC 123
           PTTRRYKLLKDVMC
Sbjct: 121 PTTRRYKLLKDVMC 124

BLAST of Carg13871 vs. TrEMBL
Match: tr|A0A1R3K0N1|A0A1R3K0N1_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_12464 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 9.3e-35
Identity = 80/132 (60.61%), Postives = 95/132 (71.97%), Query Frame = 0

Query: 1   MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT 60
           MVD+Q VCCMCGD+GFPDKLFRCN CR RFQHSYCSNYY+E   A+PIQ+CDWC+ E R 
Sbjct: 1   MVDLQTVCCMCGDVGFPDKLFRCNKCRHRFQHSYCSNYYSEF--AEPIQLCDWCQSEERN 60

Query: 61  ---------SSSSRSHGTS-SKRPPPTGERIKQHHEDASSSVGEKGKHGTAGGVPSPKPT 120
                    SSSS +HGT  + R   +G++IKQH  D  ++  EK K   + G PSP+PT
Sbjct: 61  SKHGSSSKKSSSSVAHGTGITNRSEYSGDKIKQHDRDEGTA--EKAK---SSGTPSPRPT 120

Query: 121 TRRYKLLKDVMC 123
           TRRYKLLKDVMC
Sbjct: 121 TRRYKLLKDVMC 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022964360.15.6e-68100.00uncharacterized protein LOC111464393 [Cucurbita moschata][more]
XP_023000074.13.3e-6091.87uncharacterized protein LOC111494376 [Cucurbita maxima][more]
XP_023514313.15.0e-4877.87uncharacterized protein LOC111778615 [Cucurbita pepo subsp. pepo][more]
XP_023548605.13.6e-4667.65uncharacterized protein LOC111807219 [Cucurbita pepo subsp. pepo][more]
XP_022959271.13.3e-4466.91uncharacterized protein LOC111460301 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT1G02070.12.3e-3152.27unknown protein[more]
AT3G60520.15.7e-3054.07unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3CSH8|A0A1S3CSH8_CUCME5.4e-4366.67uncharacterized protein LOC103504413 OS=Cucumis melo OX=3656 GN=LOC103504413 PE=... [more]
tr|A0A0A0KFQ0|A0A0A0KFQ0_CUCSA1.2e-4265.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108590 PE=4 SV=1[more]
tr|W9QSM3|W9QSM3_9ROSA8.4e-3659.85Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021784 PE=4 SV=1[more]
tr|A0A2P5C9J2|A0A2P5C9J2_9ROSA7.1e-3560.45Zinc finger, FYVE/PHD-type OS=Trema orientalis OX=63057 GN=TorRG33x02_293060 PE=... [more]
tr|A0A1R3K0N1|A0A1R3K0N1_9ROSI9.3e-3560.61Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_12464 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13871-RACarg13871-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..122
NoneNo IPR availablePANTHERPTHR33779FAMILY NOT NAMEDcoord: 1..122
NoneNo IPR availablePANTHERPTHR33779:SF2SUBFAMILY NOT NAMEDcoord: 1..122