Carg13871 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTGCTGGGTCGCATCTTGATTTCATTTTAGAAGCATGGTGGATGTTCAAATTGTTTGCTGCATGTGCGGCGACATCGGCTTCCCTGACAAGCTCTTCCGCTGCAACCACTGCCGCACCCGATTTCAACATTCGTATGTCTCTGCTTTTCCTTCTTCCATATTCCATGCAATATCAATTAATTTTGAGTGTTTTGCTTCAAAATCTGGCAGCTATTGCAGTAATTACTACACTGAATTGGGTCGCGCCGACCCAATTCAGGTCTGTGATTGGTGCCGGTGTGAAGGTCGTACTTCCTCCTCCTCCAGATCACATGGAACCTCCTCCAAGAGACCGCCGCCCACCGGTGAGAGAATCAAGCAACACCATGAAGATGCCTCCTCCTCCGTTGGTGAGAAGGGGAAACACGGCACCGCGGGTGGCGTTCCGTCGCCCAAGCCCACCACACGCAGGTACAAGCTTCTGAAGGACGTAATGTGCTGAAAAAGAGGGCGGTGAATGGGGTTCCTTTAATTTTCTCAAATCTTAAATATTATTATATAGACATCGTATATATAATATTATAGTTTATAATATAGGTTGCTTTTGAGTGTGCGTGGGTTTATATTGTCTTATT TTGCTGGGTCGCATCTTGATTTCATTTTAGAAGCATGGTGGATGTTCAAATTGTTTGCTGCATGTGCGGCGACATCGGCTTCCCTGACAAGCTCTTCCGCTGCAACCACTGCCGCACCCGATTTCAACATTCCTATTGCAGTAATTACTACACTGAATTGGGTCGCGCCGACCCAATTCAGGTCTGTGATTGGTGCCGGTGTGAAGGTCGTACTTCCTCCTCCTCCAGATCACATGGAACCTCCTCCAAGAGACCGCCGCCCACCGGTGAGAGAATCAAGCAACACCATGAAGATGCCTCCTCCTCCGTTGGTGAGAAGGGGAAACACGGCACCGCGGGTGGCGTTCCGTCGCCCAAGCCCACCACACGCAGGTACAAGCTTCTGAAGGACGTAATGTGCTGAAAAAGAGGGCGGTGAATGGGGTTCCTTTAATTTTCTCAAATCTTAAATATTATTATATAGACATCGTATATATAATATTATAGTTTATAATATAGGTTGCTTTTGAGTGTGCGTGGGTTTATATTGTCTTATT ATGGTGGATGTTCAAATTGTTTGCTGCATGTGCGGCGACATCGGCTTCCCTGACAAGCTCTTCCGCTGCAACCACTGCCGCACCCGATTTCAACATTCCTATTGCAGTAATTACTACACTGAATTGGGTCGCGCCGACCCAATTCAGGTCTGTGATTGGTGCCGGTGTGAAGGTCGTACTTCCTCCTCCTCCAGATCACATGGAACCTCCTCCAAGAGACCGCCGCCCACCGGTGAGAGAATCAAGCAACACCATGAAGATGCCTCCTCCTCCGTTGGTGAGAAGGGGAAACACGGCACCGCGGGTGGCGTTCCGTCGCCCAAGCCCACCACACGCAGGTACAAGCTTCTGAAGGACGTAATGTGCTGA MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRTSSSSRSHGTSSKRPPPTGERIKQHHEDASSSVGEKGKHGTAGGVPSPKPTTRRYKLLKDVMC
BLAST of Carg13871 vs. NCBI nr
Match: XP_022964360.1 (uncharacterized protein LOC111464393 [Cucurbita moschata]) HSP 1 Score: 266.2 bits (679), Expect = 5.6e-68 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
BLAST of Carg13871 vs. NCBI nr
Match: XP_023000074.1 (uncharacterized protein LOC111494376 [Cucurbita maxima]) HSP 1 Score: 240.4 bits (612), Expect = 3.3e-60 Identity = 113/123 (91.87%), Postives = 114/123 (92.68%), Query Frame = 0
BLAST of Carg13871 vs. NCBI nr
Match: XP_023514313.1 (uncharacterized protein LOC111778615 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 199.9 bits (507), Expect = 5.0e-48 Identity = 95/122 (77.87%), Postives = 95/122 (77.87%), Query Frame = 0
BLAST of Carg13871 vs. NCBI nr
Match: XP_023548605.1 (uncharacterized protein LOC111807219 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 193.7 bits (491), Expect = 3.6e-46 Identity = 92/136 (67.65%), Postives = 107/136 (78.68%), Query Frame = 0
BLAST of Carg13871 vs. NCBI nr
Match: XP_022959271.1 (uncharacterized protein LOC111460301 [Cucurbita moschata]) HSP 1 Score: 187.2 bits (474), Expect = 3.3e-44 Identity = 91/136 (66.91%), Postives = 107/136 (78.68%), Query Frame = 0
BLAST of Carg13871 vs. TAIR10
Match: AT1G02070.1 (unknown protein) HSP 1 Score: 132.1 bits (331), Expect = 2.3e-31 Identity = 69/132 (52.27%), Postives = 80/132 (60.61%), Query Frame = 0
BLAST of Carg13871 vs. TAIR10
Match: AT3G60520.1 (unknown protein) HSP 1 Score: 127.5 bits (319), Expect = 5.7e-30 Identity = 73/135 (54.07%), Postives = 90/135 (66.67%), Query Frame = 0
BLAST of Carg13871 vs. TrEMBL
Match: tr|A0A1S3CSH8|A0A1S3CSH8_CUCME (uncharacterized protein LOC103504413 OS=Cucumis melo OX=3656 GN=LOC103504413 PE=4 SV=1) HSP 1 Score: 182.6 bits (462), Expect = 5.4e-43 Identity = 92/138 (66.67%), Postives = 105/138 (76.09%), Query Frame = 0
BLAST of Carg13871 vs. TrEMBL
Match: tr|A0A0A0KFQ0|A0A0A0KFQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108590 PE=4 SV=1) HSP 1 Score: 181.4 bits (459), Expect = 1.2e-42 Identity = 90/137 (65.69%), Postives = 102/137 (74.45%), Query Frame = 0
BLAST of Carg13871 vs. TrEMBL
Match: tr|W9QSM3|W9QSM3_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021784 PE=4 SV=1) HSP 1 Score: 158.7 bits (400), Expect = 8.4e-36 Identity = 82/137 (59.85%), Postives = 96/137 (70.07%), Query Frame = 0
BLAST of Carg13871 vs. TrEMBL
Match: tr|A0A2P5C9J2|A0A2P5C9J2_9ROSA (Zinc finger, FYVE/PHD-type OS=Trema orientalis OX=63057 GN=TorRG33x02_293060 PE=4 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 7.1e-35 Identity = 81/134 (60.45%), Postives = 96/134 (71.64%), Query Frame = 0
BLAST of Carg13871 vs. TrEMBL
Match: tr|A0A1R3K0N1|A0A1R3K0N1_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_12464 PE=4 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 9.3e-35 Identity = 80/132 (60.61%), Postives = 95/132 (71.97%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|