CmoCh08G008300 (gene) Cucurbita moschata (Rifu)

NameCmoCh08G008300
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionZinc ion-binding protein
LocationCmo_Chr08 : 5305782 .. 5306662 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACGGATTTTTATACACCGACTCCACATCTTTTTGTTTATATTTAAAGTCTGTTTGTGGTTGCTTGCTGGGTCGCATCTTGATTTCATCTTAGAAGCATGGTGGATGTTCAAATTGTTTGCTGCATGTGCGGCGACATCGGCTTCCCTGACAAGCTCTTCCGCTGCAACCACTGCCGCACCCGCTTTCAACATTCGTATGTCTCTGCTTTTCTTTCTTCCATTTTCCATGCAATATCAATCAATTAATTTTGAGTGTTTTGCTTCAAAATCTGGCAGCTATTGCAGTAATTACTACACTGAATTGGGTCGCGCCGACCCAATTCAGGTCTGTGATTGGTGCCGGTGTGAAGGTCGTACTTCCTCCTCCTCCAGATCACATGGAACCTCCTCCAAGAGACCGCCGCCCACCGGTGAGAGAATCAAGCAGCACCATGAAGATGCCTCCTCCTCCGTTGGTGAGAAGGGGAAACACGGCACCGCGGGTGGCGTTCCGTCGCCCAAGCCCACCACACGCAGGTACAAGCTTCTGAAGGACGTAATGTGCTGAAAAAGAGGGCGGTGAATGGGGTTCCTTTAATTTTCTCAAATCTTAAATATTATTATATAGACATCGTATATATATAATATATATATATATATATATATCTATATAGTTTATAATATAGGTTGCTTTTGAGTGTGCGTGGGTTTATATGCAGCAGACCACATGAGTTTTGCTTCCTCTTTGTCATCGGTATATTATATACGCATATATTGTCTTATTTAAGTTTTTCTTTTTTGAGTTCTTCCCAAAATTTTAAAACAGGTCGGCTAGAATATTTCGTTTATATTGTGTTATTTGAACTTTTCTTTTCTGGGTTTTTCCCAAAATTTTAAAAC

mRNA sequence

AAACGGATTTTTATACACCGACTCCACATCTTTTTGTTTATATTTAAAGTCTGTTTGTGGTTGCTTGCTGGGTCGCATCTTGATTTCATCTTAGAAGCATGGTGGATGTTCAAATTGTTTGCTGCATGTGCGGCGACATCGGCTTCCCTGACAAGCTCTTCCGCTGCAACCACTGCCGCACCCGCTTTCAACATTCCTATTGCAGTAATTACTACACTGAATTGGGTCGCGCCGACCCAATTCAGGTCTGTGATTGGTGCCGGTGTGAAGGTCGTACTTCCTCCTCCTCCAGATCACATGGAACCTCCTCCAAGAGACCGCCGCCCACCGGTGAGAGAATCAAGCAGCACCATGAAGATGCCTCCTCCTCCGTTGGTGAGAAGGGGAAACACGGCACCGCGGGTGGCGTTCCGTCGCCCAAGCCCACCACACGCAGGTACAAGCTTCTGAAGGACGTAATGTGCTGAAAAAGAGGGCGGTGAATGGGGTTCCTTTAATTTTCTCAAATCTTAAATATTATTATATAGACATCGTATATATATAATATATATATATATATATATATCTATATAGTTTATAATATAGGTTGCTTTTGAGTGTGCGTGGGTTTATATGCAGCAGACCACATGAGTTTTGCTTCCTCTTTGTCATCGGTATATTATATACGCATATATTGTCTTATTTAAGTTTTTCTTTTTTGAGTTCTTCCCAAAATTTTAAAACAGGTCGGCTAGAATATTTCGTTTATATTGTGTTATTTGAACTTTTCTTTTCTGGGTTTTTCCCAAAATTTTAAAAC

Coding sequence (CDS)

ATGGTGGATGTTCAAATTGTTTGCTGCATGTGCGGCGACATCGGCTTCCCTGACAAGCTCTTCCGCTGCAACCACTGCCGCACCCGCTTTCAACATTCCTATTGCAGTAATTACTACACTGAATTGGGTCGCGCCGACCCAATTCAGGTCTGTGATTGGTGCCGGTGTGAAGGTCGTACTTCCTCCTCCTCCAGATCACATGGAACCTCCTCCAAGAGACCGCCGCCCACCGGTGAGAGAATCAAGCAGCACCATGAAGATGCCTCCTCCTCCGTTGGTGAGAAGGGGAAACACGGCACCGCGGGTGGCGTTCCGTCGCCCAAGCCCACCACACGCAGGTACAAGCTTCTGAAGGACGTAATGTGCTGA
BLAST of CmoCh08G008300 vs. TrEMBL
Match: A0A0A0KFQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108590 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 6.6e-43
Identity = 90/137 (65.69%), Postives = 102/137 (74.45%), Query Frame = 1

Query: 1   MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT 60
           MVD+QIVCCMCGDIGFPDKLF CN CR RFQHSYCSNYY+E   A+PI+VCDWC+CEGR 
Sbjct: 1   MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSE--SAEPIEVCDWCQCEGR- 60

Query: 61  SSSSRSHGTSSKRPPPTG---------------ERIKQHHEDASSSVGEKGKHGTAGGVP 120
            S+SRSHG+SS+RPP TG               + IK HH D+ +   EKGKHG AG   
Sbjct: 61  -STSRSHGSSSRRPPSTGTNATGIMTRSEYSGDKLIKHHHHDSPT---EKGKHGGAGSTS 120

Query: 121 SPKPTTRRYKLLKDVMC 123
           SP+PTTRRYKLLKDVMC
Sbjct: 121 SPRPTTRRYKLLKDVMC 130

BLAST of CmoCh08G008300 vs. TrEMBL
Match: W9QSM3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021784 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 4.5e-36
Identity = 82/137 (59.85%), Postives = 96/137 (70.07%), Query Frame = 1

Query: 1   MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT 60
           MVD+Q VCCMCGD+GFPDKLFRCN CR RFQHSYCSNYY+E   A+P+QVCDWC+ EG+ 
Sbjct: 1   MVDLQTVCCMCGDVGFPDKLFRCNKCRHRFQHSYCSNYYSEY--AEPVQVCDWCQSEGKL 60

Query: 61  SSSSRSHGTSSK-------------RPPPTGERIKQH--HEDASSSVGEKGKHGTAGGVP 120
           SS    HG+SSK             R   +G++IKQH   ED   S  +KGK+    G P
Sbjct: 61  SS---RHGSSSKKSVTVGGESGVSNRSEYSGDKIKQHVDREDGGGSGDQKGKN--PSGAP 120

Query: 121 SPKPTTRRYKLLKDVMC 123
           SP+PTTRRYKLLKDVMC
Sbjct: 121 SPRPTTRRYKLLKDVMC 130

BLAST of CmoCh08G008300 vs. TrEMBL
Match: A0A067H1B5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033128mg PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 8.6e-35
Identity = 77/130 (59.23%), Postives = 93/130 (71.54%), Query Frame = 1

Query: 1   MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT 60
           MVD+Q VCCMCGD+GFPDKLFRCN CR R QHSYCSNYY+E   A+PI++CDWC+ E R+
Sbjct: 1   MVDLQTVCCMCGDVGFPDKLFRCNKCRNRIQHSYCSNYYSEF--AEPIEMCDWCQSEERS 60

Query: 61  S-------SSSRSHGTS-SKRPPPTGERIKQHHEDASSSVGEKGKHGTAGGVPSPKPTTR 120
           S        SS  +GT  + R   +G++IKQ   + SS   EKGK+    G PSP+PTTR
Sbjct: 61  SRLGSSAKKSSSGYGTGITNRSEYSGDKIKQQDREESSGSAEKGKN--PSGTPSPRPTTR 120

Query: 121 RYKLLKDVMC 123
           RYKLLKDVMC
Sbjct: 121 RYKLLKDVMC 126

BLAST of CmoCh08G008300 vs. TrEMBL
Match: V4TE16_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022623mg PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 8.6e-35
Identity = 77/130 (59.23%), Postives = 93/130 (71.54%), Query Frame = 1

Query: 1   MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT 60
           MVD+Q VCCMCGD+GFPDKLFRCN CR R QHSYCSNYY+E   A+PI++CDWC+ E R+
Sbjct: 35  MVDLQTVCCMCGDVGFPDKLFRCNKCRNRIQHSYCSNYYSEF--AEPIEMCDWCQSEERS 94

Query: 61  S-------SSSRSHGTS-SKRPPPTGERIKQHHEDASSSVGEKGKHGTAGGVPSPKPTTR 120
           S        SS  +GT  + R   +G++IKQ   + SS   EKGK+    G PSP+PTTR
Sbjct: 95  SRLGSSAKKSSSGYGTGITNRSEYSGDKIKQQDREESSGSAEKGKN--PSGTPSPRPTTR 154

Query: 121 RYKLLKDVMC 123
           RYKLLKDVMC
Sbjct: 155 RYKLLKDVMC 160

BLAST of CmoCh08G008300 vs. TrEMBL
Match: A0A0D2PI63_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G175800 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 8.6e-35
Identity = 77/131 (58.78%), Postives = 89/131 (67.94%), Query Frame = 1

Query: 1   MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT 60
           MVD+Q VCCMCGD+GFPDKLFRCN C  RFQHSYCSNYY+EL  A+PI++CDWC+ E R 
Sbjct: 31  MVDLQTVCCMCGDVGFPDKLFRCNKCHHRFQHSYCSNYYSEL--AEPIELCDWCQSEERN 90

Query: 61  ---------SSSSRSHGTSSKRPPPTGERIKQHHEDASSSVGEKGKHGTAGGVPSPKPTT 120
                    SS     G    R   +G++IKQH  D SS    KGK   + G PSP+PTT
Sbjct: 91  SRHGSSLKKSSGGNGSGIIVNRSEYSGDKIKQHDRDESSGGDHKGK---SSGTPSPRPTT 150

Query: 121 RRYKLLKDVMC 123
           RRYKLLKDVMC
Sbjct: 151 RRYKLLKDVMC 156

BLAST of CmoCh08G008300 vs. TAIR10
Match: AT1G02070.1 (AT1G02070.1 unknown protein)

HSP 1 Score: 132.1 bits (331), Expect = 2.3e-31
Identity = 69/132 (52.27%), Postives = 80/132 (60.61%), Query Frame = 1

Query: 7   VCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRTSSSSRS 66
           VCCMCGD+GF DKLF C HCR RFQHSYCSNYY +   A+P ++CDWCR + R  S+   
Sbjct: 4   VCCMCGDVGFSDKLFSCGHCRCRFQHSYCSNYYGQF--AEPTEICDWCRSDDRKLSNVAR 63

Query: 67  HGTSSKRPPPT----------------GERIKQHHEDASSSVGEKGKHGTAGGVPSPKPT 123
           HG SS + P +                G RIK H+ +    V  KG  G  GGV SPK  
Sbjct: 64  HGGSSSKKPSSSVKYENDFSNRSEYSPGHRIK-HNNNRHDQVA-KGVAGDGGGVTSPKTA 123

BLAST of CmoCh08G008300 vs. TAIR10
Match: AT3G60520.1 (AT3G60520.1 unknown protein)

HSP 1 Score: 127.5 bits (319), Expect = 5.7e-30
Identity = 73/135 (54.07%), Postives = 90/135 (66.67%), Query Frame = 1

Query: 1   MVDVQI-VCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCE-- 60
           MVD++  VCCMCGD+GF DKLF C+ C  RFQHSYCS+YY E  +ADPI++CDWC+CE  
Sbjct: 1   MVDLERRVCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYYKE--QADPIKICDWCQCEAK 60

Query: 61  GRTSSSSRSHGTSSKRP-----PPTGERIKQH--HEDASSSV---GEKGKHGTAGGVPSP 120
            RT +    +G SSKR           +IKQ   ++  SSS+    +KGK     GVPSP
Sbjct: 61  SRTGAKHGVNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGK----TGVPSP 120

Query: 121 KPTTRRYKLLKDVMC 123
           +P TRRYKLLKDVMC
Sbjct: 121 RPATRRYKLLKDVMC 129

BLAST of CmoCh08G008300 vs. NCBI nr
Match: gi|659134040|ref|XP_008467003.1| (PREDICTED: uncharacterized protein LOC103504413 [Cucumis melo])

HSP 1 Score: 182.6 bits (462), Expect = 4.2e-43
Identity = 92/138 (66.67%), Postives = 105/138 (76.09%), Query Frame = 1

Query: 1   MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT 60
           MVD+QIVCCMCGDIGFPDKLF CN CR RFQHSYCSNYY+E   A+PI+VCDWC+CEGR 
Sbjct: 1   MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSE--SAEPIEVCDWCQCEGR- 60

Query: 61  SSSSRSHG-TSSKRPPPTG---------------ERIKQHHEDASSSVGEKGKHGTAGGV 120
           S+SSRSHG +SS+RPP TG               + IK HH+D+ +   EKGKHG AG  
Sbjct: 61  STSSRSHGSSSSRRPPSTGTNATGIMSRSEYSSDKLIKHHHDDSPT---EKGKHGGAGST 120

Query: 121 PSPKPTTRRYKLLKDVMC 123
           PSP+PTTRRYKLLKDVMC
Sbjct: 121 PSPRPTTRRYKLLKDVMC 132

BLAST of CmoCh08G008300 vs. NCBI nr
Match: gi|449445461|ref|XP_004140491.1| (PREDICTED: uncharacterized protein LOC101205257 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 9.4e-43
Identity = 90/137 (65.69%), Postives = 102/137 (74.45%), Query Frame = 1

Query: 1   MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT 60
           MVD+QIVCCMCGDIGFPDKLF CN CR RFQHSYCSNYY+E   A+PI+VCDWC+CEGR 
Sbjct: 1   MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSE--SAEPIEVCDWCQCEGR- 60

Query: 61  SSSSRSHGTSSKRPPPTG---------------ERIKQHHEDASSSVGEKGKHGTAGGVP 120
            S+SRSHG+SS+RPP TG               + IK HH D+ +   EKGKHG AG   
Sbjct: 61  -STSRSHGSSSRRPPSTGTNATGIMTRSEYSGDKLIKHHHHDSPT---EKGKHGGAGSTS 120

Query: 121 SPKPTTRRYKLLKDVMC 123
           SP+PTTRRYKLLKDVMC
Sbjct: 121 SPRPTTRRYKLLKDVMC 130

BLAST of CmoCh08G008300 vs. NCBI nr
Match: gi|747044635|ref|XP_011090075.1| (PREDICTED: uncharacterized protein LOC105170847 [Sesamum indicum])

HSP 1 Score: 162.9 bits (411), Expect = 3.5e-37
Identity = 82/135 (60.74%), Postives = 93/135 (68.89%), Query Frame = 1

Query: 1   MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT 60
           MVD+Q VCCMCGD+GFPDKLFRC+ CR RFQHSYCSNYY+E   A PIQVCDWC+CE R 
Sbjct: 1   MVDIQTVCCMCGDVGFPDKLFRCSKCRNRFQHSYCSNYYSE--HAQPIQVCDWCQCEERN 60

Query: 61  SSSSRSHGTSSK-------------RPPPTGERIKQHHEDASSSVGEKGKHGTAGGVPSP 120
           SSS   HG SS+             R   +G++IKQHH +  SS  EK      G  PSP
Sbjct: 61  SSS--RHGISSRNNNNNRSAHANEVRSAYSGDKIKQHHREEGSSAAEK----PTGKTPSP 120

Query: 121 KPTTRRYKLLKDVMC 123
           +PTTRRYKLLKDVMC
Sbjct: 121 RPTTRRYKLLKDVMC 127

BLAST of CmoCh08G008300 vs. NCBI nr
Match: gi|703072320|ref|XP_010089254.1| (hypothetical protein L484_021784 [Morus notabilis])

HSP 1 Score: 158.7 bits (400), Expect = 6.5e-36
Identity = 82/137 (59.85%), Postives = 96/137 (70.07%), Query Frame = 1

Query: 1   MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT 60
           MVD+Q VCCMCGD+GFPDKLFRCN CR RFQHSYCSNYY+E   A+P+QVCDWC+ EG+ 
Sbjct: 1   MVDLQTVCCMCGDVGFPDKLFRCNKCRHRFQHSYCSNYYSEY--AEPVQVCDWCQSEGKL 60

Query: 61  SSSSRSHGTSSK-------------RPPPTGERIKQH--HEDASSSVGEKGKHGTAGGVP 120
           SS    HG+SSK             R   +G++IKQH   ED   S  +KGK+    G P
Sbjct: 61  SS---RHGSSSKKSVTVGGESGVSNRSEYSGDKIKQHVDREDGGGSGDQKGKN--PSGAP 120

Query: 121 SPKPTTRRYKLLKDVMC 123
           SP+PTTRRYKLLKDVMC
Sbjct: 121 SPRPTTRRYKLLKDVMC 130

BLAST of CmoCh08G008300 vs. NCBI nr
Match: gi|641866960|gb|KDO85644.1| (hypothetical protein CISIN_1g033128mg [Citrus sinensis])

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-34
Identity = 77/130 (59.23%), Postives = 93/130 (71.54%), Query Frame = 1

Query: 1   MVDVQIVCCMCGDIGFPDKLFRCNHCRTRFQHSYCSNYYTELGRADPIQVCDWCRCEGRT 60
           MVD+Q VCCMCGD+GFPDKLFRCN CR R QHSYCSNYY+E   A+PI++CDWC+ E R+
Sbjct: 1   MVDLQTVCCMCGDVGFPDKLFRCNKCRNRIQHSYCSNYYSEF--AEPIEMCDWCQSEERS 60

Query: 61  S-------SSSRSHGTS-SKRPPPTGERIKQHHEDASSSVGEKGKHGTAGGVPSPKPTTR 120
           S        SS  +GT  + R   +G++IKQ   + SS   EKGK+    G PSP+PTTR
Sbjct: 61  SRLGSSAKKSSSGYGTGITNRSEYSGDKIKQQDREESSGSAEKGKN--PSGTPSPRPTTR 120

Query: 121 RYKLLKDVMC 123
           RYKLLKDVMC
Sbjct: 121 RYKLLKDVMC 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KFQ0_CUCSA6.6e-4365.69Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108590 PE=4 SV=1[more]
W9QSM3_9ROSA4.5e-3659.85Uncharacterized protein OS=Morus notabilis GN=L484_021784 PE=4 SV=1[more]
A0A067H1B5_CITSI8.6e-3559.23Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033128mg PE=4 SV=1[more]
V4TE16_9ROSI8.6e-3559.23Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022623mg PE=4 SV=1[more]
A0A0D2PI63_GOSRA8.6e-3558.78Uncharacterized protein OS=Gossypium raimondii GN=B456_001G175800 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G02070.12.3e-3152.27 unknown protein[more]
AT3G60520.15.7e-3054.07 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659134040|ref|XP_008467003.1|4.2e-4366.67PREDICTED: uncharacterized protein LOC103504413 [Cucumis melo][more]
gi|449445461|ref|XP_004140491.1|9.4e-4365.69PREDICTED: uncharacterized protein LOC101205257 [Cucumis sativus][more]
gi|747044635|ref|XP_011090075.1|3.5e-3760.74PREDICTED: uncharacterized protein LOC105170847 [Sesamum indicum][more]
gi|703072320|ref|XP_010089254.1|6.5e-3659.85hypothetical protein L484_021784 [Morus notabilis][more]
gi|641866960|gb|KDO85644.1|1.2e-3459.23hypothetical protein CISIN_1g033128mg [Citrus sinensis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G008300.1CmoCh08G008300.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33779FAMILY NOT NAMEDcoord: 1..122
score: 2.8
NoneNo IPR availablePANTHERPTHR33779:SF2SUBFAMILY NOT NAMEDcoord: 1..122
score: 2.8