CsaV3_6G008960 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G008960
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	NAD-dependent protein deacetylase HST1-like protein
Location	chr6 : 7199089 .. 7202790 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTTCATCTCCCCATAATCATTTCCCAATTCTTTCTTGCTTTCTAATTCATCAACTTTCAACAAAAATGAAGGTCTTTACATAATGAACAACCTCCAAACACTTTGTATTTTATATCCTCTTGTTATTAGTAGTATTATTCATTCCAGTGCATACTCTTTTCTTGATTGATTAATTTAATCCACCACTTTCTTCTTTTTGTTTCCTTCCTTTTCAGATCTTCAATTGGGTGCACAAGACTTTTCATCATTCTCTTCTCAAGGGTTTAATTTCTCTCATTTTATTGCAATTCTTTCTTCCTTTGGGTGTAGGATATATATTTTTAAAAATACATATCTTAGAGTTATGTTCGAAACATAAATTGAATGCTTGATATTTTTCAGAGGGTTTTGCGCAAAATGCGACGAAGAAGAATGAAAGTGTAAGCATTAATGAAGTGGATAGTCATGCATTGTTGAAGCAAGTAGCGTTTGATCGTGTGGAAACCATTCATGACTGGAGAGATGGCATTCTCACCATTGGCACATTCGGGTTTGAATCATTGAAACCTTCGAACGAGCAAAAGGAGTATTTCATGCTCGAGAGCGAAGAAGACGACTACGAAGACGAGGAAGAAGAGGAAGAGAAATCGTTCGTTCACGATGAAGATGACGACATTATCGGTTACTTGGAAAACGAAGAACTAAACCCTTTGATGTTGAAAGCATTTGGACACAAATCAAAGGATGTAAGTGCTGAGAAAGGTGAAGATGATTTGATCAAATACAATGCAATTATGGAGATGGAGAATGAGGAGGAGAAGAAGAAAGGGGAGAGGAGAATTACACTGGCTGATTTGTTCTTAGCTGATGCAAGAGATGTGGCAAAAGTACTTGAGGATGACAAAGTGCTTCAAAAGAAAACAGCTGATGTGAGAAGTAAGAGTGGTCTCTCCTTTGCCAAGAAGTTTATCCCTCGAGTTAAGGAGGATTCACACCCTATTAAGAACTTTCAACGAGTGAGTAACCTTATTATTATTTTTTATTATTGTAGTCTTGTAAAGTTTTGGGCCAATGGGTGATTTAACAAGTTTTTAAAATGAATTTCAAAAAACAAGTGTTTGTCTGCAAGTTGCTAAAATCTGATAACGACATTCACTTGGAAATTTGTGTTACGCCACTAAGTTGGGTGAGAAAAAATTGGGTATAGGAGAGCCTAATTAGCCGACAAAGTATTTTTTGTGATAGAATTACTAAAATTTTTGTGATTTTGGGAGATGCAGATTGAAAAAATATTCACCATTTAAAACAAAATTTTAATTTTTTAAACATTCTTAATTCGAAAATGGAGAGTTTATGTTGTTATAAATTCAAAAAAAAATCACACCAAACACAAAAAGGAATGGTGTAAAAATTAATCCAAAACTTAAATCTTGAAAGATAAAAAGATGGCAACAAAAGCAACCTGAAAATAAAATGATGAATCCATAAGTACAAAACATGCATGTTGGTATTGTTTATAGAAAAGAAGAAAGTAGAATTTATGAAAGAAACAACAAAAAGGAAATTTAAAAAGAAAGAGAGAGAGAAGAAATCATTGAGTTGTTGTATGATTGGGATGCCACGTGTACGTTATGCAGTTGATGAGAAGGATGATGAAGAGGAAGATCCATCCAGAGATTGAAGACAAGGTCATCATCAACAAACCATCATCGTCTGACCTAACAACTCACCAAATAGGAATAATCCCCAACAATGGACCTTTTCAATCCTTTGAATCCATCTCTCTTCTTCCAACTCAAGGTAATTTTTACTTTTTTTTTTATTATTATTATTATCTTCTCCTTTTCTTTCTTTCCATGAAATAAGAAAAATTATGAACGTTTCTATACTGAAGTTTCCAACTTAAGTTAGTTAAAGGTTATCCAGCCTAGCTAGGGTTTATTTTATCATTTTAGTTATGTTTGTTTGGTAAGCGTTTTATTTAAAGAACTTTTCACTTTTAAGTTTATTGTTTTGAAATCTACTTCTGGTTCATGTATTCAAAATTTTGAAAACTAAAAATAAAGAATTTTTAAAAACAATTTAACTACATACTCATCACTTCGATTATAAATTTTATCTTTTTCAACTTAATTGACTAAGTGATAAAAACGTCCCTTTTTAAAAATTTTAAATTTTGGTTTGATTTTTAAAAACATAACAAAAAGAAAGAAACTAATTATGGGTGAAAAGTTTTAATTTTAAAAAAAAAAATCAAAAACAAAAAATTAAACCTTTATCTAAGTAGATGATCACGTAGATATGTTGAATTGGACACGTTGATTTCTTGAATTAGACTAAAAGGTCAAATCCATCCTAAAGTGTCAAAAACATGGTAGAAATTGAAAAGATGAGAAATGAAAAACAATCAAACCCATCAAAATTGAGTCAATTCTGTGTCTATTTGTCTTTAATAATTACCCAATTCTATCCTATTTTCAAATAACTTTAGAGAACCATAATACAATTGGTTCATTTGATTACAGCTATTTCAACTTTAGTTTTAACCCAAAATCAAATTATATGGATTCACCTAACACTGAAATTTTCACTATGCCAACAACCCTAGCATAGGGTATATCATGGTGAGACTACAAGTGTTCAATGTAGGCCCTAAAAAACATTTGAATAATTTTATCAACTTTTCTCAATTGGACAAATTTCAATCAAAGCTGTATATGGTCAAATGGGATTATTGAAGATTAAACTTGCATATCACATACAGAAAAGTGTCATTATTACTGTCCTTGTATTTTATCCATGTGACATTTGAAATTTAATGGGCCATTTCATCGCAAACAACACAAAAGCAAATTCCAAGTAAGAAACAGTCAAACAAATCAGTCACAAATCTTTTCCTCTGTCATACAATTCTGGCTATTAATTAAATATCGCAAACTCATCTAATCTGGTGGGCTCTCACATGTCTAATCCACTCATACTTCATGCTATTTGATACAGATATATATGTGAATTATTTAGGTTCCCAAAGTCTATTTTTCTTCACATTCTTAAATACATTGTTCTTAAACCCAAGCAAAAACAAGTTTTTGACTGCATCTTCTTTTGACAACTAAGTATAAACGAAAAATTAAATATAATGGTTCAGAAACGAGGTCTTATTTGAATACTCATTTTGGATTGACTTTTTGCTGCTTTAAGTAATCTTTGTTTTACTATTTCTCTTAAGTGTAATTAGAAAATGCCTCCTTATAATGGGGAATTATTATATACATAGCAAAAAGAAACTAGTAAAAAAAAAAATTCAAATGAGAGAGTGTGTGATGGATTTTAATTACTATATTTTTTAAAATTGTTTCAATATTATATTTTACTATTATAAGTTTGTTTTTGTTTAGTCACTAATTGGTTTTTTTCTTTCTAATTTGGTGTGTTTACTTAGGTGCAGATGCAATTGCGTGATGGATTTAATGGATGGATGTATTTGAAATTAATGAGTTGTGTTTAATTATCTCTTATGGTAATTTGTTGAAAACAATGTTTATTTATTATTTTTGTTCATTAGGTGTTTATTGTATATGGAGCTTTTTAATTAAGACTACTTGTAAGTTGTAAGTTGTTTTGATGTTGTTTTTGGGTTTAGCAAACAAAGTCGTGGAATTGTGGTTTGTGGGTCAGTTCTTGGCGTTTCTCTACTTCCTCAAATTTATTCATTTCCAA

mRNA sequence

ATGAAGATCTTCAATTGGGTGCACAAGACTTTTCATCATTCTCTTCTCAAGGAGGGTTTTGCGCAAAATGCGACGAAGAAGAATGAAAGTGTAAGCATTAATGAAGTGGATAGTCATGCATTGTTGAAGCAAGTAGCGTTTGATCGTGTGGAAACCATTCATGACTGGAGAGATGGCATTCTCACCATTGGCACATTCGGGTTTGAATCATTGAAACCTTCGAACGAGCAAAAGGAGTATTTCATGCTCGAGAGCGAAGAAGACGACTACGAAGACGAGGAAGAAGAGGAAGAGAAATCGTTCGTTCACGATGAAGATGACGACATTATCGGTTACTTGGAAAACGAAGAACTAAACCCTTTGATGTTGAAAGCATTTGGACACAAATCAAAGGATGTAAGTGCTGAGAAAGGTGAAGATGATTTGATCAAATACAATGCAATTATGGAGATGGAGAATGAGGAGGAGAAGAAGAAAGGGGAGAGGAGAATTACACTGGCTGATTTGTTCTTAGCTGATGCAAGAGATGTGGCAAAAGTACTTGAGGATGACAAAGTGCTTCAAAAGAAAACAGCTGATGTGAGAAGTAAGAGTGGTCTCTCCTTTGCCAAGAAGTTTATCCCTCGAGTTAAGGAGGATTCACACCCTATTAAGAACTTTCAACGATTGATGAGAAGGATGATGAAGAGGAAGATCCATCCAGAGATTGAAGACAAGGTCATCATCAACAAACCATCATCGTCTGACCTAACAACTCACCAAATAGGAATAATCCCCAACAATGGACCTTTTCAATCCTTTGAATCCATCTCTCTTCTTCCAACTCAAGGTGCAGATGCAATTGCGTGA

Coding sequence (CDS)

ATGAAGATCTTCAATTGGGTGCACAAGACTTTTCATCATTCTCTTCTCAAGGAGGGTTTTGCGCAAAATGCGACGAAGAAGAATGAAAGTGTAAGCATTAATGAAGTGGATAGTCATGCATTGTTGAAGCAAGTAGCGTTTGATCGTGTGGAAACCATTCATGACTGGAGAGATGGCATTCTCACCATTGGCACATTCGGGTTTGAATCATTGAAACCTTCGAACGAGCAAAAGGAGTATTTCATGCTCGAGAGCGAAGAAGACGACTACGAAGACGAGGAAGAAGAGGAAGAGAAATCGTTCGTTCACGATGAAGATGACGACATTATCGGTTACTTGGAAAACGAAGAACTAAACCCTTTGATGTTGAAAGCATTTGGACACAAATCAAAGGATGTAAGTGCTGAGAAAGGTGAAGATGATTTGATCAAATACAATGCAATTATGGAGATGGAGAATGAGGAGGAGAAGAAGAAAGGGGAGAGGAGAATTACACTGGCTGATTTGTTCTTAGCTGATGCAAGAGATGTGGCAAAAGTACTTGAGGATGACAAAGTGCTTCAAAAGAAAACAGCTGATGTGAGAAGTAAGAGTGGTCTCTCCTTTGCCAAGAAGTTTATCCCTCGAGTTAAGGAGGATTCACACCCTATTAAGAACTTTCAACGATTGATGAGAAGGATGATGAAGAGGAAGATCCATCCAGAGATTGAAGACAAGGTCATCATCAACAAACCATCATCGTCTGACCTAACAACTCACCAAATAGGAATAATCCCCAACAATGGACCTTTTCAATCCTTTGAATCCATCTCTCTTCTTCCAACTCAAGGTGCAGATGCAATTGCGTGA

Protein sequence

MKIFNWVHKTFHHSLLKEGFAQNATKKNESVSINEVDSHALLKQVAFDRVETIHDWRDGILTIGTFGFESLKPSNEQKEYFMLESEEDDYEDEEEEEEKSFVHDEDDDIIGYLENEELNPLMLKAFGHKSKDVSAEKGEDDLIKYNAIMEMENEEEKKKGERRITLADLFLADARDVAKVLEDDKVLQKKTADVRSKSGLSFAKKFIPRVKEDSHPIKNFQRLMRRMMKRKIHPEIEDKVIINKPSSSDLTTHQIGIIPNNGPFQSFESISLLPTQGADAIA

Homology

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BLAST of CsaV3_6G008960 vs. NCBI nr
Match: XP_004140615.1 (PREDICTED: uncharacterized protein LOC101216403 isoform X1 [Cucumis sativus] >KGN46544.1 hypothetical protein Csa_6G107930 [Cucumis sativus])

HSP 1 Score: 479.2 bits (1232), Expect = 9.8e-132
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0


Query: 1   MKIFNWVHKTFHHSLLKEGFAQNATKKNESVSINEVDSHALLKQVAFDRVETIHDWRDGI 60
           MKIFNWVHKTFHHSLLKEGFAQNATKKNESVSINEVDSHALLKQVAFDRVETIHDWRDGI
Sbjct: 1   MKIFNWVHKTFHHSLLKEGFAQNATKKNESVSINEVDSHALLKQVAFDRVETIHDWRDGI 60

Query: 61  LTIGTFGFESLKPSNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGYLENEELNP 120
           LTIGTFGFESLKPSNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGYLENEELNP
Sbjct: 61  LTIGTFGFESLKPSNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGYLENEELNP 120

Query: 121 LMLKAFGHKSKDVSAEKGEDDLIKYNAIMEMENEEEKKKGERRITLADLFLADARDVAKV 180
           LMLKAFGHKSKDVSAEKGEDDLIKYNAIMEMENEEEKKKGERRITLADLFLADARDVAKV
Sbjct: 121 LMLKAFGHKSKDVSAEKGEDDLIKYNAIMEMENEEEKKKGERRITLADLFLADARDVAKV 180

Query: 181 LEDDKVLQKKTADVRSKSGLSFAKKFIPRVKEDSHPIKNFQRLMRRMMKRKIHPEIEDKV 240
           LEDDKVLQKKTADVRSKSGLSFAKKFIPRVKEDSHPIKNFQRLMRRMMKRKIHPEIEDKV
Sbjct: 181 LEDDKVLQKKTADVRSKSGLSFAKKFIPRVKEDSHPIKNFQRLMRRMMKRKIHPEIEDKV 240

Query: 241 IINKPSSSDLTTHQIGIIPNNGPFQSFESISLLPTQGADAIA 283
           IINKPSSSDLTTHQIGIIPNNGPFQSFESISLLPTQGADAIA
Sbjct: 241 IINKPSSSDLTTHQIGIIPNNGPFQSFESISLLPTQGADAIA 282

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BLAST of CsaV3_6G008960 vs. NCBI nr
Match: XP_011656860.1 (PREDICTED: uncharacterized protein LOC101216403 isoform X2 [Cucumis sativus])

HSP 1 Score: 470.3 bits (1209), Expect = 4.6e-129
Identity = 280/282 (99.29%), Postives = 280/282 (99.29%), Query Frame = 0


Query: 1   MKIFNWVHKTFHHSLLKEGFAQNATKKNESVSINEVDSHALLKQVAFDRVETIHDWRDGI 60
           MKIFNWVHKTFHHSLLKEGFAQNATKKNESVSINEVDSHALLKQVAFDRVETIHDWRDGI
Sbjct: 1   MKIFNWVHKTFHHSLLKEGFAQNATKKNESVSINEVDSHALLKQVAFDRVETIHDWRDGI 60

Query: 61  LTIGTFGFESLKPSNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGYLENEELNP 120
           LTIGTFGFESLKPSNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGYLENEELNP
Sbjct: 61  LTIGTFGFESLKPSNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGYLENEELNP 120

Query: 121 LMLKAFGHKSKDVSAEKGEDDLIKYNAIMEMENEEEKKKGERRITLADLFLADARDVAKV 180
           LMLKAFGHKSKDVSAEKGEDDLIKYNAIMEMENEEEKKKGERRITLADLFLADARDVAKV
Sbjct: 121 LMLKAFGHKSKDVSAEKGEDDLIKYNAIMEMENEEEKKKGERRITLADLFLADARDVAKV 180

Query: 181 LEDDKVLQKKTADVRSKSGLSFAKKFIPRVKEDSHPIKNFQRLMRRMMKRKIHPEIEDKV 240
           LEDDKVLQKKTADVRSKSGLSFAKKFIPRVKEDSHPIKNFQRLMRRMMKRKIHPEIEDKV
Sbjct: 181 LEDDKVLQKKTADVRSKSGLSFAKKFIPRVKEDSHPIKNFQRLMRRMMKRKIHPEIEDKV 240

Query: 241 IINKPSSSDLTTHQIGIIPNNGPFQSFESISLLPTQGADAIA 283
           IINKPSSSDLTTHQIGIIPNNGPFQSFESISLLPTQ  DAIA
Sbjct: 241 IINKPSSSDLTTHQIGIIPNNGPFQSFESISLLPTQ--DAIA 280

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BLAST of CsaV3_6G008960 vs. NCBI nr
Match: XP_008459743.1 (PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog A [Cucumis melo])

HSP 1 Score: 443.0 bits (1138), Expect = 7.8e-121
Identity = 260/282 (92.20%), Postives = 263/282 (93.26%), Query Frame = 0


Query: 1   MKIFNWVHKTFHHSLLKEGFAQNATKKNESVSINEVDSHALLKQVAFDRVETIHDWRDGI 60
           MKIFNWVHKTFHHSLLKEGFAQ+ATKKNESV INEVD HALLKQVAFD VE IHDWRDGI
Sbjct: 1   MKIFNWVHKTFHHSLLKEGFAQHATKKNESVGINEVDRHALLKQVAFDHVEAIHDWRDGI 60

Query: 61  LTIGTFGFESLKPSNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGYLENEELNP 120
           LTIGTFGFESLKPSNE        XXXXXXXXXXXXXXXXXXXXXXXXXIGYLENEELNP
Sbjct: 61  LTIGTFGFESLKPSNE-QKEYFALXXXXXXXXXXXXXXXXXXXXXXXXXIGYLENEELNP 120

Query: 121 LMLKAFGHKSKDVSAEKGEDDLIKYNAIMEMENEEEKKKGERRITLADLFLADARDVAKV 180
           LM KAFGHKSKDVS EKGEDDLIKYNAIMEMENEEEKKKGERRITLADLFLADARDVAK 
Sbjct: 121 LMFKAFGHKSKDVSVEKGEDDLIKYNAIMEMENEEEKKKGERRITLADLFLADARDVAKA 180

Query: 181 LEDDKVLQKKTADVRSKSGLSFAKKFIPRVKEDSHPIKNFQRLMRRMMKRKIHPEIEDKV 240
           LEDDKVLQKKTADVRSKSGLSFAKKFIPRVKEDSHPIKNFQRLMRRMMKRKIHPE+EDK+
Sbjct: 181 LEDDKVLQKKTADVRSKSGLSFAKKFIPRVKEDSHPIKNFQRLMRRMMKRKIHPEVEDKI 240

Query: 241 IINKPSSSDLTTHQIGIIPNNGPFQSFESISLLPTQGADAIA 283
           IINKP SSDL THQIGIIPNNGPFQSFESISLLPTQ  DAIA
Sbjct: 241 IINKP-SSDLITHQIGIIPNNGPFQSFESISLLPTQ--DAIA 278

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BLAST of CsaV3_6G008960 vs. NCBI nr
Match: XP_022958918.1 (adoMet-dependent rRNA methyltransferase SPB1 [Cucurbita moschata] >XP_023549058.1 adoMet-dependent rRNA methyltransferase SPB1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.9 bits (847), Expect = 4.3e-87
Identity = 217/294 (73.81%), Postives = 237/294 (80.61%), Query Frame = 0


Query: 1   MKIFNWVHKTFHHSLLKEGFAQNATKKNESVSINEVDSHALLKQVAFDRVETIHDWRDGI 60
           MKIFNWVHKTFHH+ LKEG+ QNATKK E+ +INEVD  ALLKQV  D VE +HDWRDGI
Sbjct: 1   MKIFNWVHKTFHHTALKEGYTQNATKKTETATINEVDRQALLKQVDLD-VEALHDWRDGI 60

Query: 61  LTIGTFGFESLKPSN---EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGYLENEE 120
           LTIGTFGFESLKPSN   E    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ++++EE
Sbjct: 61  LTIGTFGFESLKPSNKQMEYLVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFVDDEE 120

Query: 121 LNPLMLKAFGHKSKDVSAEKGEDDLI-----------KYNAIMEMENEEEKKKGERRITL 180
           LNPLM   FGHKSKDV+ EKG D +I           KYN IMEME +EEKKK ERRITL
Sbjct: 121 LNPLMFTTFGHKSKDVNGEKGGDLIIGAYELNMNMESKYNEIMEMEEDEEKKKVERRITL 180

Query: 181 ADLFLADARDVAKVLEDDKVLQKKTADVRSKSGLSFAKKFIPRVKEDSHPIKNFQRLMRR 240
           ADLFLADA DVAK LE++KVLQKKT DVR+KSGLSFAKK IPRVKEDSHPIKN QRLMRR
Sbjct: 181 ADLFLADAGDVAKALENEKVLQKKTGDVRTKSGLSFAKKLIPRVKEDSHPIKNLQRLMRR 240

Query: 241 MMKRKIHPEIEDKVIINKPSSSDLTTHQIGIIPNNGPFQSFESISLLPTQGADA 281
           M+KRKIHPEIEDK  INK SSSD  THQIG  PN+  F+ FE++SLLP Q A A
Sbjct: 241 MLKRKIHPEIEDK--INKASSSD-QTHQIG-TPNHEGFEGFEALSLLPIQDAVA 289

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BLAST of CsaV3_6G008960 vs. NCBI nr
Match: XP_023006624.1 (eukaryotic translation initiation factor 5B [Cucurbita maxima])

HSP 1 Score: 330.5 bits (846), Expect = 5.7e-87
Identity = 217/296 (73.31%), Postives = 238/296 (80.41%), Query Frame = 0


Query: 1   MKIFNWVHKTFHHSLLKEGFAQNATKKNESVSINEVDSHALLKQVAFDRVETIHDWRDGI 60
           MKIFNWVHKTFHH+ LKEG+ QNATKK E+ +INEVD  ALLKQV  D VE +HDWRDGI
Sbjct: 1   MKIFNWVHKTFHHTALKEGYTQNATKKTETATINEVDRQALLKQVDLD-VEALHDWRDGI 60

Query: 61  LTIGTFGFESLKPSNE-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGYLEN 120
           LTIGTFGFESLKPSN+        XXXXXXXXXXXXXXXXXXXXXXXXXXXXX I ++++
Sbjct: 61  LTIGTFGFESLKPSNKQMEYLVLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIDFVDD 120

Query: 121 EELNPLMLKAFGHKSKDVSAEKGEDDLI-----------KYNAIMEMENEEEKKKGERRI 180
           EELNPLM   FGHKSKDV+ EKG D +I           KYN IMEME +EEKKK ERRI
Sbjct: 121 EELNPLMFTTFGHKSKDVNGEKGGDLIIGAYELNMNMESKYNEIMEMEEDEEKKKVERRI 180

Query: 181 TLADLFLADARDVAKVLEDDKVLQKKTADVRSKSGLSFAKKFIPRVKEDSHPIKNFQRLM 240
           TLADLFLADA DVAK LE++KVLQKKT DVR+KSGLSFAKK IPRVKEDSHPIKN QRLM
Sbjct: 181 TLADLFLADAGDVAKALENEKVLQKKTGDVRTKSGLSFAKKLIPRVKEDSHPIKNLQRLM 240

Query: 241 RRMMKRKIHPEIEDKVIINKPSSSDLTTHQIGIIPNNGPFQSFESISLLPTQGADA 281
           RRM+KRKIHPEIEDK  INK SSSD  THQIG  PN+  F+ FE++SLLP Q A A
Sbjct: 241 RRMLKRKIHPEIEDK--INKASSSD-QTHQIG-TPNHEGFEGFEALSLLPIQDAVA 291

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BLAST of CsaV3_6G008960 vs. TAIR10
Match: AT2G46640.3 (unknown protein)

HSP 1 Score: 79.7 bits (195), Expect = 3.2e-15
Identity = 77/275 (28.00%), Postives = 122/275 (44.36%), Query Frame = 0


Query: 1   MKIFNWVHKTFHHSLLKE--GFAQNATKK-NESVSINEVDSHALLKQVAFDRVETIHDWR 60
           M IFNWV K  H +++KE  G  +N  KK NE +S  E ++ A+L QV    V+ + +W 
Sbjct: 1   MTIFNWVQKKLHQNVIKEIDGVRKNEKKKRNEGISEIEKNTKAILDQVGL--VDALDNWF 60

Query: 61  DGILTIGTFGFESLKPSNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIG-----Y 120
           DG+LTIGTFGF++L    E                                 I      Y
Sbjct: 61  DGVLTIGTFGFDTLNFKEEDEMDDDECGSGDLDYVVIDGSIIKNVDQESDPLISVENKFY 120

Query: 121 LENEELNPLMLKA----FGHKSKDVSAEKGEDDLIKYNAIMEMENEEEKKKGERRITLAD 180
             +E++  L ++A    FG      S +  E   +   A  E E E +KK    R TLA+
Sbjct: 121 DHHEDVGNLYVQADTDHFG------SIKTAETPAV--TAAAEAEIEPQKK----RTTLAE 180

Query: 181 LFL-------------------ADARDVAKVLEDDKVLQKKTADVRSKSGLSFAKKFIPR 240
           LF+                    D  +V    ++   L K+ + V+ K  +S +K+    
Sbjct: 181 LFMEDHDKGYDTWHCKKPNNPNLDGEEVKYYKQNGSKLSKRFSFVKKKLVMSKSKE---- 240

Query: 241 VKEDSHPIKNFQRLMRRMMKRKIHPEIEDKVIINK 245
            + D  PIK  +++++RM+K+KIHP+++    + K
Sbjct: 241 EENDLRPIKKMRQMIKRMLKKKIHPDVDATKALKK 257

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BLAST of CsaV3_6G008960 vs. TrEMBL
Match: tr|A0A0A0KCK2|A0A0A0KCK2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G107930 PE=4 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 6.5e-132
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0


Query: 1   MKIFNWVHKTFHHSLLKEGFAQNATKKNESVSINEVDSHALLKQVAFDRVETIHDWRDGI 60
           MKIFNWVHKTFHHSLLKEGFAQNATKKNESVSINEVDSHALLKQVAFDRVETIHDWRDGI
Sbjct: 1   MKIFNWVHKTFHHSLLKEGFAQNATKKNESVSINEVDSHALLKQVAFDRVETIHDWRDGI 60

Query: 61  LTIGTFGFESLKPSNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGYLENEELNP 120
           LTIGTFGFESLKPSNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGYLENEELNP
Sbjct: 61  LTIGTFGFESLKPSNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGYLENEELNP 120

Query: 121 LMLKAFGHKSKDVSAEKGEDDLIKYNAIMEMENEEEKKKGERRITLADLFLADARDVAKV 180
           LMLKAFGHKSKDVSAEKGEDDLIKYNAIMEMENEEEKKKGERRITLADLFLADARDVAKV
Sbjct: 121 LMLKAFGHKSKDVSAEKGEDDLIKYNAIMEMENEEEKKKGERRITLADLFLADARDVAKV 180

Query: 181 LEDDKVLQKKTADVRSKSGLSFAKKFIPRVKEDSHPIKNFQRLMRRMMKRKIHPEIEDKV 240
           LEDDKVLQKKTADVRSKSGLSFAKKFIPRVKEDSHPIKNFQRLMRRMMKRKIHPEIEDKV
Sbjct: 181 LEDDKVLQKKTADVRSKSGLSFAKKFIPRVKEDSHPIKNFQRLMRRMMKRKIHPEIEDKV 240

Query: 241 IINKPSSSDLTTHQIGIIPNNGPFQSFESISLLPTQGADAIA 283
           IINKPSSSDLTTHQIGIIPNNGPFQSFESISLLPTQGADAIA
Sbjct: 241 IINKPSSSDLTTHQIGIIPNNGPFQSFESISLLPTQGADAIA 282

[Close]

BLAST of CsaV3_6G008960 vs. TrEMBL
Match: tr|A0A1S3CAZ2|A0A1S3CAZ2_CUCME (U3 small nucleolar RNA-associated protein 14 homolog A OS=Cucumis melo OX=3656 GN=LOC103498785 PE=4 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 5.2e-121
Identity = 260/282 (92.20%), Postives = 263/282 (93.26%), Query Frame = 0


Query: 1   MKIFNWVHKTFHHSLLKEGFAQNATKKNESVSINEVDSHALLKQVAFDRVETIHDWRDGI 60
           MKIFNWVHKTFHHSLLKEGFAQ+ATKKNESV INEVD HALLKQVAFD VE IHDWRDGI
Sbjct: 1   MKIFNWVHKTFHHSLLKEGFAQHATKKNESVGINEVDRHALLKQVAFDHVEAIHDWRDGI 60

Query: 61  LTIGTFGFESLKPSNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGYLENEELNP 120
           LTIGTFGFESLKPSNE        XXXXXXXXXXXXXXXXXXXXXXXXXIGYLENEELNP
Sbjct: 61  LTIGTFGFESLKPSNE-QKEYFALXXXXXXXXXXXXXXXXXXXXXXXXXIGYLENEELNP 120

Query: 121 LMLKAFGHKSKDVSAEKGEDDLIKYNAIMEMENEEEKKKGERRITLADLFLADARDVAKV 180
           LM KAFGHKSKDVS EKGEDDLIKYNAIMEMENEEEKKKGERRITLADLFLADARDVAK 
Sbjct: 121 LMFKAFGHKSKDVSVEKGEDDLIKYNAIMEMENEEEKKKGERRITLADLFLADARDVAKA 180

Query: 181 LEDDKVLQKKTADVRSKSGLSFAKKFIPRVKEDSHPIKNFQRLMRRMMKRKIHPEIEDKV 240
           LEDDKVLQKKTADVRSKSGLSFAKKFIPRVKEDSHPIKNFQRLMRRMMKRKIHPE+EDK+
Sbjct: 181 LEDDKVLQKKTADVRSKSGLSFAKKFIPRVKEDSHPIKNFQRLMRRMMKRKIHPEVEDKI 240

Query: 241 IINKPSSSDLTTHQIGIIPNNGPFQSFESISLLPTQGADAIA 283
           IINKP SSDL THQIGIIPNNGPFQSFESISLLPTQ  DAIA
Sbjct: 241 IINKP-SSDLITHQIGIIPNNGPFQSFESISLLPTQ--DAIA 278

[Close]

BLAST of CsaV3_6G008960 vs. TrEMBL
Match: tr|A0A2P4KRW0|A0A2P4KRW0_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_37650 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.7e-47
Identity = 170/303 (56.11%), Postives = 200/303 (66.01%), Query Frame = 0


Query: 1   MKIFNWVHKTFHHSLLKEGFAQNATKKNESVSINEVDSHALLKQVAFDRVETIHDWRDGI 60
           MKIFNWVHK FHH++LKEG A+N  K  ES + N  D  ALLKQVA    E +  WRDGI
Sbjct: 1   MKIFNWVHKRFHHTVLKEGLARN-VKTTESTT-NNSDKQALLKQVAL--AEVLDGWRDGI 60

Query: 61  LTIGTFGFESLKPSNE--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGYLENEEL 120
           LTIGTFGF+ LKP N+      XXXXXXXXXXXXXXXXXXXXXXXXXXXXX    ++EEL
Sbjct: 61  LTIGTFGFDPLKPFNQQKEYLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHEEL 120

Query: 121 NPLMLKAFGHKSKDVSAEKGED------DLI-----------KYNAIMEMENEEEKKKGE 180
           NPLM   F H  +D+ +    D      D+I           +Y+ +   E EE+KKKGE
Sbjct: 121 NPLMFTTFEHNFEDLESNFDHDINVCKPDVIMTVDGVPLTPPEYDELDNREGEEKKKKGE 180

Query: 181 RRITLADLFLADARDVAKVLEDDKVLQ---KKTADVRSKSGLSFAKKFIPRV---KEDSH 240
            RITLADLFLADA DV + L+ D       KKT  +R+K+GLSFAKKFIPRV   KEDS 
Sbjct: 181 -RITLADLFLADA-DVKEKLDPDHFFPNSGKKTV-LRTKNGLSFAKKFIPRVKGAKEDSS 240

Query: 241 PIKNFQRLMRRMMKRKIHPEIEDKVIINKPSSSDLTTHQIGIIPNNGPFQSFESISLLPT 279
           PIKN QRLMR+M+KRKIHPE E K+      S   T  + G+I N+    S ES++LLPT
Sbjct: 241 PIKNLQRLMRKMLKRKIHPEFEVKI----HKSESQTPGETGVITNDEHGVS-ESVTLLPT 291

[Close]

BLAST of CsaV3_6G008960 vs. TrEMBL
Match: tr|U3MMQ4|U3MMQ4_PRUPE (TAC1 OS=Prunus persica OX=3760 GN=PRUPE_2G194000 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 5.7e-43
Identity = 142/307 (46.25%), Postives = 185/307 (60.26%), Query Frame = 0


Query: 1   MKIFNWVHKTFHHSLLKEGFAQNATKKNESVSINEVDSHALLKQVAFDRVETIHDWRDGI 60
           MKIFNWVHK  H  ++K+GFA N   K   +  N+ D+ A LKQV    V+ +  WRDGI
Sbjct: 1   MKIFNWVHKRLHQRVVKDGFAGNV--KKSELETNDKDTQAFLKQVGLVNVDGLDGWRDGI 60

Query: 61  LTIGTFGFESLKPSNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGY-LENEELN 120
           LTIGTFGF+ LKPS           XXXXXXXXXXXXXXXXXXXXXXXX  + +E+EELN
Sbjct: 61  LTIGTFGFDPLKPSTHQNEYFVLESXXXXXXXXXXXXXXXXXXXXXXXXXXHSVEDEELN 120

Query: 121 PLMLKAFGHKSKDVSA------EKGEDDLIKYNAIM---------------EMENEEEKK 180
           PLM   F H  +D+ +      +K  D ++  + +                +  N++ K 
Sbjct: 121 PLMFTTFEHSFEDIGSNFDAIVQKPADVILTVDGVPLTPFEGSSEISTKPDQSANDQSKN 180

Query: 181 KGERRITLADLFLADARDVAKVLEDDKVLQ---KKTADVRSKSGLSFAKKFIPRVKEDSH 240
           K  +RITLADLF AD  DV ++  D   +Q   +K  + R++SGL+FAKK IPRVK+DS 
Sbjct: 181 KKGQRITLADLFQADVPDVGQLKLDSGKVQPEMEKKMNARTRSGLAFAKKLIPRVKDDSS 240

Query: 241 PIKNFQRLMRRMMKRKIHP-EIEDKVIINKPSSSDLTTHQIGIIPNNGPFQSFESISLLP 282
           PIKN QRLMRRM+KRKIHP E+E K+  +           I  + N+    ++ES+SLLP
Sbjct: 241 PIKNMQRLMRRMLKRKIHPAELEVKIHKSDGQKQPSAVELISNVEND----AYESVSLLP 300

[Close]

BLAST of CsaV3_6G008960 vs. TrEMBL
Match: tr|A0A2N9IRQ4|A0A2N9IRQ4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54876 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 6.2e-42
Identity = 152/302 (50.33%), Postives = 185/302 (61.26%), Query Frame = 0


Query: 1   MKIFNWVHKTFHHSLLKEGFAQNATKKNESVSINEVDSHALLKQVAFDRVETIHDWRDGI 60
           MKIFNWVHK FHH++LK+GFA++   K   ++ N  D  ALLKQVA    + +  WRDGI
Sbjct: 1   MKIFNWVHKRFHHTVLKDGFARSV--KTTELTTNNTDKQALLKQVAL--ADVLDGWRDGI 60

Query: 61  LTIGTFGFES-LKPSNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGYLENEELN 120
           LTIGT G E+ LKP N+         XXXXXXXXXXXXXXXXXXXXXXXX          
Sbjct: 61  LTIGTLGLENPLKPFNQQNEYLILESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 PLMLKAFGHKSKDVSAEKGEDDLIKYNAIM------------------EMEN-----EEE 180
           PLM   FGH  +D  +    D++ K + IM                  E++N     E++
Sbjct: 121 PLMFTTFGHNFEDFESNPDHDNVHKPDVIMTVDGVSLTPYLGSPELNVELDNMEGSGEQK 180

Query: 181 KKKGERRITLADLFLADARDVAKVLEDDKVLQK--KTADVRSKSGLSFAKKFIPRVKEDS 240
           KKKGE RITLADLFLADA DV + L+ D+V     K   +R+K+GLSFAKKFIPRVKEDS
Sbjct: 181 KKKGE-RITLADLFLADA-DVKEKLKPDQVYPNSGKKPVLRTKNGLSFAKKFIPRVKEDS 240

Query: 241 HPIKNFQRLMRRMMKRKIHPEIEDKVIINKPSSSDLTTHQIGIIPNNGPFQSFESISLLP 277
            PIKN QRLM+RM+KRKIHPE E K+      S      + G+I  +G     ES +LLP
Sbjct: 241 TPIKNLQRLMKRMLKRKIHPEFEVKM----HKSDGEKPGETGLI-IDGEHGVSESDNLLP 291

The following BLAST results are available for this feature:

BLAST of CsaV3_6G008960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140615.1	9.8e-132	100.00	PREDICTED: uncharacterized protein LOC101216403 isoform X1 [Cucumis sativus] >KG...	[more]
XP_011656860.1	4.6e-129	99.29	PREDICTED: uncharacterized protein LOC101216403 isoform X2 [Cucumis sativus]	[more]
XP_008459743.1	7.8e-121	92.20	PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog A [Cucumis melo]	[more]
XP_022958918.1	4.3e-87	73.81	adoMet-dependent rRNA methyltransferase SPB1 [Cucurbita moschata] >XP_023549058....	[more]
XP_023006624.1	5.7e-87	73.31	eukaryotic translation initiation factor 5B [Cucurbita maxima]	[more]

BLAST of CsaV3_6G008960 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46640.3	3.2e-15	28.00	unknown protein	[more]

BLAST of CsaV3_6G008960 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G008960 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KCK2\|A0A0A0KCK2_CUCSA	6.5e-132	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G107930 PE=4 SV=1	[more]
tr\|A0A1S3CAZ2\|A0A1S3CAZ2_CUCME	5.2e-121	92.20	U3 small nucleolar RNA-associated protein 14 homolog A OS=Cucumis melo OX=3656 G...	[more]
tr\|A0A2P4KRW0\|A0A2P4KRW0_QUESU	1.7e-47	56.11	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_37650 PE=4 SV=1	[more]
tr\|U3MMQ4\|U3MMQ4_PRUPE	5.7e-43	46.25	TAC1 OS=Prunus persica OX=3760 GN=PRUPE_2G194000 PE=4 SV=1	[more]
tr\|A0A2N9IRQ4\|A0A2N9IRQ4_FAGSY	6.2e-42	50.33	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54876 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G008960.1	CsaV3_6G008960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38366	FAMILY NOT NAMED	coord: 1..248

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G008960	CSPI06G08580	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G008960	Cucsa.120810	Cucumber (Gy14) v1	cgycucB159
CsaV3_6G008960	CmaCh17G005010	Cucurbita maxima (Rimu)	cmacucB0451
CsaV3_6G008960	CmoCh17G004740	Cucurbita moschata (Rifu)	cmocucB0444
CsaV3_6G008960	Cp4.1LG12g04310	Cucurbita pepo (Zucchini)	cpecucB0176
CsaV3_6G008960	CsGy6G008680	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G008960	Carg26675	Silver-seed gourd	carcucB0938
CsaV3_6G008960	Cla006689	Watermelon (97103) v1	cucwmB570
CsaV3_6G008960	MELO3C022248	Melon (DHL92) v3.5.1	cucmeB446
CsaV3_6G008960	ClCG06G002790	Watermelon (Charleston Gray)	cucwcgB497
CsaV3_6G008960	Lsi09G016550	Bottle gourd (USVL1VR-Ls)	cuclsiB422
CsaV3_6G008960	MELO3C022248.2	Melon (DHL92) v3.6.1	cucmedB438
CsaV3_6G008960	Cla97C06G112160	Watermelon (97103) v2	cucwmbB487
CsaV3_6G008960	Bhi12G001939	Wax gourd	cucwgoB562

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G008960	Silver-seed gourd	carcucB0100
CsaV3_6G008960	Cucurbita moschata (Rifu)	cmocucB1065
CsaV3_6G008960	Bottle gourd (USVL1VR-Ls)	cuclsiB424