CsaV3_6G002120 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G002120
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	pentatricopeptide repeat-containing protein At2g27610-like
Location	chr6 : 1461563 .. 1465229 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTCTCCATCAATTTTCCCGTCTCTCCACCTGTTCAATCCATTGTCTTCTCTTCACGAACACCCAATTACCAGGCCAGTCTCTCATTCCCTCAAACCAATTTCTCTTTTTCTTCTTCTTTTTCTTCCAGAATTGGAATTTACTTTCGTAATGCTTGAATTTTTTGGCAGATAAGGAATTCAGCTTTAACAATAACGCATTCTGCTATCCAGAAACCGTTTGCAACCTCCGGTATCAAAACTCCCAATTCGGTTAAAGTTGATAAAACTGATTCCCATCTTCAAATTCAGCCGCTTGTTGATCTTCTGCGTGACTGTGTCGATGCTAGGTTTCTGAAACAAGCCAAAACTGTTCATGGGTTTTTGTTAAAATCAAAATTTTCCAACCACCATTCTCTGGTCTTGCTTAATCATGTTGCTCATGCCTATTCGAAATGCTCCGATATCGATGCTGCCTGTAGACTGTTTGATCAAATGTCCCAGAGAAATACATTTTCGTGGACTGTCTTGATTGCTGGATTGGCTGAGAATGGTTTGTTCCTTGATGGGTTTGAGTTCTTCTGTGAAATGCAGAGTCAGGGAATTTTCCCTGATCAGTTTGCTTATTCCGGTATATTACAGATATGTATTGGCCTGGATTCCATTGAATTGGGAAACATGGTGCATGCCCAGATTGTTATTAGAGGCTTTACATCTCATACTTTTGTGTCTACTGCTCTTCTTAATATGTATGCGAAGTTACAAGAGATTGAGGATTCATACAAGGTGTTTAACACCATGACTGAAGTTAATGTAGTCTCATGGAATGCTATGATCACGGGGTTCACATCAAACGATCTTTACTTAGATGCTTTTGATCTTTTTCTCAGAATGATGGGGGAAGGAGTAACACCCGATGCACAAACGTTTATCGGTGTTGCAAAAGCTATCGGTATGTTGAGAGATGTCAACAAGGCAAAAGAAGTTAGCGGCTATGCTTTGGAGTTGGGTGTGGACTCTAATACTCTTGTGGGAACTGCCCTTATTGATATGAATTCTAAATGTGGATCTTTGCAAGAGGCAAGATCTATCTTTAACTCACATTTCATAACTTGTCGGTTTAATGCACCATGGAATGCAATGATTTCGGGGTATTTACGGAGTGGGTTTAATGAAAAGGCCTTGGAATTGTTTGCTAAAATGTGTCAAAATGACATATATTTGGACCATTACACTTACTGTAGTGTATTTAATGCTATAGCTGCTTTGAAGTGTTTGTCGTTGGGAAAGAAGGTTCATGCCAGGGCTATAAAATCAGGATTGGAAGTGAATTATGTAAGTATCTCGAATGCAGTGGCTAATGCGTATGCTAAATGTGGATCACTGGAGGATGTAAGGAAGGTCTTTAACAGGATGGAAGATAGAGATTTGATATCTTGGACTAGCCTAGTGACTGCTTACTCTCAATGTTCTGAATGGGATAAGGCAATAGAGATCTTCTCAAATATGAGAGCAGAAGGTATTGCACCCAATCAGTTCACCTTTTCTAGCGTGCTTGTTTCGTGTGCTAACCTTTGCTTACTTGAGTACGGTCAGCAAGTCCACGGGATCATTTGCAAGGTTGGCTTGGATATGGACAAATGCATAGAAAGTGCGCTGGTTGACATGTATGCCAAATGTGGTTGTTTGGGTGATGCGAAGAAGGTTTTCAATAGAATCTCTAATGCTGATACAGTGTCGTGGACTGCAATAATAGCTGGCCATGCTCAACACGGTATTGTCGATGATGCCCTTCAACTCTTTAGAAGGATGGTGCAGTTAGGCGTGGAGCCCAATGCTGTTACTTTTTTGTGTGTTCTATTTGCATGTAGCCACGGTGGTCTGGTAGAAGAAGGCCTACAGTACTTCAAGCTAATGAAGAAAACTTATGGTTTGGTGCCAGAGATGGAACATTATGCCTGTATCGTGGATCTCTTAAGTCGTGTGGGTCATCTAAATGATGCAATGGAATTTATTAGTAGGATGCCTGTAGAGCCCAATGAAATGGTTTGGCAGACCTTGTTGGGGGCTTGCAGGGTCCATGGTAATGTTGAATTGGGAGAGCTTGCTGCTCAGAAGATACTTTCTTTCAAAGCAGAAAACTCTGCCACTTATGTTCTTTTATCCAACACCTATATCGAATCAGGGAGTTACAAAGATGGACTTAGTTTGCGGCATTTGATGAAAGAGCAGGGGGTAAAAAAGGAACCCGGATGTAGTTGGATCTCTGTGAATGGTACATTGCACAAGTTTTATGCAGGTGATCAACAACATCCAGAAAAAGATAAAATTTATGCAAAGCTAGAAGAGTTGAAGTTGAAACTCATTTCTTTGGATGATGTACCAGATTTGAGTTATGAGCTGTAAGATGTGGACCTTGGTTAAGTTATACGGATATGGGTGGAAAACCCGGTCCCTTCAACCAAGTCTCTATGGAGGAGAAAAAAAAAACATCAGCCAAAGATAACAAATTAAACAGTGAAAGGCAAATTGGTGCTTAAGAACTAAATTTGGGGGTAAAGGATATGGGACTTACAGATATGATTGTCTGCATTATTCATCTCCTGCAGGTTCTGAAATATGTATGATGATGTACTGCATTAGATAAGGAAGAATAACGATTCAAGTTAGGGAAATGATAAAAAGCGCCACGGTACATGCTTGGTTCTGTGAAGATCTCTTACTTTTTGACAATATGATTGCCTTATTGGGTGAAGGCTATCCGAAGTTTGACCTCTTCTATAGTAATGCATTGTTATGGTGTGCTAATATGGAATCATAGTGCCTTTCTGCTTATGATTTTTACTGGGGTCTACTGAACTTGTCATGTTCGAAGTAGTAAAATTTATCATTTCATTACATGAAAATAAGTTTTGGAGAGAAATTTCTCAAATTCATCCAGCAGAGGAAATGAAGATATTTCCCTTTTCTCTCTCCCTCTGATTTATTTTTGTTTTAACTCTCTAAATTTGTCTTTTATCCTTTCTTTTTTTCCTTGGAAACGTGGCCTAGTTGTTTTATTTCCTGAATTCTATTTATCATGCCAAGAATCTGTTTACTATTTCTCCCGTGAATTAGCTGAAATGAGTTTACTGTTTATATTTATATTATTGCATTTTCCATTTTTACCATAAGAGGAATTAGATTGCTTTTGAATTATTTATTTCAGCTGCAGTGAAGTGCTAACTGAAATAAAATACTTTTGACATGATCTCTCATAATCATAACTAATCAGTATGCTTCTTCTTCCCCACCAATAAACTCACTAACTTCTTGGGGTGTAATAAGATTGATCTATTATGCATTGAAATGAAACCACCACTTCATGAGTTGCTTCTTTTCTCAGGCAGACAGGTAAAAAAACTACTCTACTACAAAAAAAACAGTGTCTATTCTTAGATAATGCATTTAGTGAGTTAATCCTTATAATCTTTACCTTTAGAAAGCATCACAAATGAAACTTAGGTGAATCAACCTCACTTGTATGACTTTGATACAATCTAATGTGTAATTTTACTGACTTAAACTGTTGTTGTTGGAGTAGGGAAAGGAAAGTTATAATGCGAGAAATGAAGGGTTGGATGGTGAAGTTATGAAGCAAAGAGGAAGAAGAAAGGCTCCTGGTTTAGAGGAGGAGGAGAAATGA

mRNA sequence

ATGAGTTTCTCCATCAATTTTCCCGTCTCTCCACCTGTTCAATCCATTGTCTTCTCTTCACGAACACCCAATTACCAGATAAGGAATTCAGCTTTAACAATAACGCATTCTGCTATCCAGAAACCGTTTGCAACCTCCGGTATCAAAACTCCCAATTCGGTTAAAGTTGATAAAACTGATTCCCATCTTCAAATTCAGCCGCTTGTTGATCTTCTGCGTGACTGTGTCGATGCTAGAATGATGGGGGAAGGAGTAACACCCGATGCACAAACGTTTATCGGTGTTGCAAAAGCTATCGGTATGTTGAGAGATGTCAACAAGGCAAAAGAAGTTAGCGGCTATGCTTTGGAGTTGGGTGTGGACTCTAATACTCTTGTGGGAACTGCCCTTATTGATATGAATTCTAAATGTGGATCTTTGCAAGAGGCAAGATCTATCTTTAACTCACATTTCATAACTTTATGCTTCTTCTTCCCCACCAATAAACTCACTAACTTCTTGGGGTGTAATAAGATTGATCTATTATGCATTGAAATGAAACCACCACTTCATGAGTTGCTTCTTTTCTCAGGCAGACAGGGAAAGGAAAGTTATAATGCGAGAAATGAAGGGTTGGATGGTGAAGTTATGAAGCAAAGAGGAAGAAGAAAGGCTCCTGGTTTAGAGGAGGAGGAGAAATGA

Coding sequence (CDS)

ATGAGTTTCTCCATCAATTTTCCCGTCTCTCCACCTGTTCAATCCATTGTCTTCTCTTCACGAACACCCAATTACCAGATAAGGAATTCAGCTTTAACAATAACGCATTCTGCTATCCAGAAACCGTTTGCAACCTCCGGTATCAAAACTCCCAATTCGGTTAAAGTTGATAAAACTGATTCCCATCTTCAAATTCAGCCGCTTGTTGATCTTCTGCGTGACTGTGTCGATGCTAGAATGATGGGGGAAGGAGTAACACCCGATGCACAAACGTTTATCGGTGTTGCAAAAGCTATCGGTATGTTGAGAGATGTCAACAAGGCAAAAGAAGTTAGCGGCTATGCTTTGGAGTTGGGTGTGGACTCTAATACTCTTGTGGGAACTGCCCTTATTGATATGAATTCTAAATGTGGATCTTTGCAAGAGGCAAGATCTATCTTTAACTCACATTTCATAACTTTATGCTTCTTCTTCCCCACCAATAAACTCACTAACTTCTTGGGGTGTAATAAGATTGATCTATTATGCATTGAAATGAAACCACCACTTCATGAGTTGCTTCTTTTCTCAGGCAGACAGGGAAAGGAAAGTTATAATGCGAGAAATGAAGGGTTGGATGGTGAAGTTATGAAGCAAAGAGGAAGAAGAAAGGCTCCTGGTTTAGAGGAGGAGGAGAAATGA

Protein sequence

MSFSINFPVSPPVQSIVFSSRTPNYQIRNSALTITHSAIQKPFATSGIKTPNSVKVDKTDSHLQIQPLVDLLRDCVDARMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITLCFFFPTNKLTNFLGCNKIDLLCIEMKPPLHELLLFSGRQGKESYNARNEGLDGEVMKQRGRRKAPGLEEEEK

Homology

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BLAST of CsaV3_6G002120 vs. NCBI nr
Match: XP_011656423.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At3g25970 [Cucumis sativus])

HSP 1 Score: 229.9 bits (585), Expect = 8.3e-57
Identity = 156/343 (45.48%), Postives = 157/343 (45.77%), Query Frame = 0


Query: 1   MSFSINFPVSPPVQSIVFSSRTPNYQIRNSALTITHSAIQKPFATSGIKTPNSVKVDKTD 60
           MSFSINFPVSPPVQSIVFSSRTPNYQIRNSALTITHSAIQKPFATSGIKTPNSVKVDKTD
Sbjct: 1   MSFSINFPVSPPVQSIVFSSRTPNYQIRNSALTITHSAIQKPFATSGIKTPNSVKVDKTD 60

Query: 61  SHLQIQPLVDLLRDCVDA------------------------------------------ 120
           SHLQIQPLVDLLRDCVDA                                          
Sbjct: 61  SHLQIQPLVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDA 120

Query: 121 ------------------------------------------------------------ 164
                                                                       
Sbjct: 121 ACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIG 180

[Close]

BLAST of CsaV3_6G002120 vs. NCBI nr
Match: XP_016901974.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Cucumis melo])

HSP 1 Score: 196.1 bits (497), Expect = 1.3e-46
Identity = 141/343 (41.11%), Postives = 145/343 (42.27%), Query Frame = 0


Query: 1   MSFSINFPVSPPVQSIVFSSRTPNYQIRNSALTITHSAIQKPFATSGIKTPNSVKVDKTD 60
           MSFSI F VS PVQSIVF  RTPNYQIR SALTITHSA QK  ATSGIK PNSVKVDKTD
Sbjct: 1   MSFSIIFAVSQPVQSIVFPPRTPNYQIRTSALTITHSATQKAIATSGIKIPNSVKVDKTD 60

Query: 61  SHLQIQPLVDLLRDCVDA------------------------------------------ 120
           SHL+IQPLVDLLR CVDA                                          
Sbjct: 61  SHLEIQPLVDLLRGCVDARFLKQAKTVHGFLLKSKFSNHDSLVLLNHVAHAYSKCSDIDA 120

Query: 121 ------------------------------------------------------------ 164
                                                                       
Sbjct: 121 ACRVFDQMSQRNIFSWTAIIAGLAENGLFLDGFEFFCEMQSQGIFPDHFAYSGILQICIG 180

[Close]

BLAST of CsaV3_6G002120 vs. NCBI nr
Match: KGN45817.1 (hypothetical protein Csa_6G013890 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 9.9e-42
Identity = 130/317 (41.01%), Postives = 131/317 (41.32%), Query Frame = 0


Query: 27  IRNSALTITHSAIQKPFATSGIKTPNSVKVDKTDSHLQIQPLVDLLRDCVDA-------- 86
           IRNSALTITHSAIQKPFATSGIKTPNSVKVDKTDSHLQIQPLVDLLRDCVDA        
Sbjct: 17  IRNSALTITHSAIQKPFATSGIKTPNSVKVDKTDSHLQIQPLVDLLRDCVDARFLKQAKT 76

Query: 87  ------------------------------------------------------------ 146
                                                                       
Sbjct: 77  VHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAEN 136

Query: 147 ------------------------------------------------------------ 164
                                                                       
Sbjct: 137 GLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVS 196

[Close]

BLAST of CsaV3_6G002120 vs. NCBI nr
Match: XP_022939229.1 (pentatricopeptide repeat-containing protein At3g16610-like [Cucurbita moschata])

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 122/331 (36.86%), Postives = 132/331 (39.88%), Query Frame = 0


Query: 1   MSFSINFPVSPPVQSIVFSSRTPNYQIRNSALTITHSAIQKPFATSGIKTPNSVKVDKTD 60
           MS SINF V+ PVQSIVF SRTPN QIRNS+LT THSA QK   TSGIK PNSV VDK++
Sbjct: 1   MSLSINFVVAQPVQSIVFPSRTPNGQIRNSSLTTTHSATQKAITTSGIKIPNSVSVDKSN 60

Query: 61  SHLQIQPLVDLLRDCVDA------------------------------------------ 120
           S L+IQPLVDLLR CVDA                                          
Sbjct: 61  SRLEIQPLVDLLRGCVDARFLKQAKTVHGFLLKSKFSNHDSLVLLNHVADAYSKCSDIDA 120

Query: 121 ------------------------------------------------------------ 152
                                                                       
Sbjct: 121 ACRLFDKMSQRNIFSWTVIIAGLAKNGLFHDGFEFFCEMQSQDIFPDQFAYSGVLQICIG 180

[Close]

BLAST of CsaV3_6G002120 vs. NCBI nr
Match: XP_023549692.1 (pentatricopeptide repeat-containing protein At3g16610-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.8 bits (408), Expect = 2.8e-36
Identity = 121/331 (36.56%), Postives = 131/331 (39.58%), Query Frame = 0


Query: 1   MSFSINFPVSPPVQSIVFSSRTPNYQIRNSALTITHSAIQKPFATSGIKTPNSVKVDKTD 60
           MS SINF V+ PVQSIVF SRTPN QIRNS+LT THSA QK   T GIK PNSV VDK++
Sbjct: 1   MSLSINFVVAQPVQSIVFPSRTPNGQIRNSSLTTTHSATQKAITTPGIKIPNSVSVDKSN 60

Query: 61  SHLQIQPLVDLLRDCVDA------------------------------------------ 120
           S L+IQPLVDLLR CVDA                                          
Sbjct: 61  SRLEIQPLVDLLRGCVDARFLKQAKTVHGFLLKSKFSNHDSLVLLNHVADAYSKCSDIDA 120

Query: 121 ------------------------------------------------------------ 152
                                                                       
Sbjct: 121 ACRLFDKMSQRNIFSWTVIIAGLAKNGLFHDGFEFFCEMQSQDIFPDQFAYSGVLQICIG 180

[Close]

BLAST of CsaV3_6G002120 vs. TAIR10
Match: AT1G03540.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 4.9e-11
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 82  GEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQ 141
           G+G+ PD  TF  V  A G LR + + KE+ G  +  G+ SN +V ++L+DM  KCGS++
Sbjct: 258 GKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVR 317

Query: 142 EARSIFN 149
           EAR +FN
Sbjct: 318 EARQVFN 324

[Close]

BLAST of CsaV3_6G002120 vs. TAIR10
Match: AT1G11290.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 61.6 bits (148), Expect = 7.1e-10
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 80  MMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGS 139
           M  E + P   T + V  A+  LR ++  KE+ GYA+  G DS   + TAL+DM +KCGS
Sbjct: 227 MCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGS 286

Query: 140 LQEARSIFN 149
           L+ AR +F+
Sbjct: 287 LETARQLFD 295

[Close]

BLAST of CsaV3_6G002120 vs. TAIR10
Match: AT2G22410.1 (SLOW GROWTH 1)

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-09
Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 80  MMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGS 139
           M  EGV PD  T IG+  +  ML D+N+ KE   Y  E G+     +  AL+DM SKCG 
Sbjct: 248 MESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGD 307

Query: 140 LQEARSIFNS 150
           + EAR IF++
Sbjct: 308 IHEARRIFDN 317

[Close]

BLAST of CsaV3_6G002120 vs. TAIR10
Match: AT1G74600.1 (pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-08
Identity = 25/71 (35.21%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 78  ARMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKC 137
           + M+ +G +PD  T   V         + + KE+ GY L  G+D    +G+AL++M SKC
Sbjct: 540 SEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKC 599

Query: 138 GSLQEARSIFN 149
           GSL+ AR +++
Sbjct: 600 GSLKLARQVYD 610

[Close]

BLAST of CsaV3_6G002120 vs. TAIR10
Match: AT5G52850.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-08
Identity = 26/70 (37.14%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 80  MMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGS 139
           MM  G  P+  TF  V ++   LRD++    V G  ++ G + N++VG++L D+ SKCG 
Sbjct: 115 MMASGTHPNEFTFSSVVRSCAGLRDISYGGRVHGSVIKTGFEGNSVVGSSLSDLYSKCGQ 174

Query: 140 LQEARSIFNS 150
            +EA  +F+S
Sbjct: 175 FKEACELFSS 184

[Close]

BLAST of CsaV3_6G002120 vs. Swiss-Prot
Match: sp|Q9LR69|PPR8_ARATH (Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E4 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.9e-10
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 82  GEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQ 141
           G+G+ PD  TF  V  A G LR + + KE+ G  +  G+ SN +V ++L+DM  KCGS++
Sbjct: 258 GKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVR 317

Query: 142 EARSIFN 149
           EAR +FN
Sbjct: 318 EARQVFN 324

[Close]

BLAST of CsaV3_6G002120 vs. Swiss-Prot
Match: sp|Q3E6Q1|PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-08
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 80  MMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGS 139
           M  E + P   T + V  A+  LR ++  KE+ GYA+  G DS   + TAL+DM +KCGS
Sbjct: 227 MCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGS 286

Query: 140 LQEARSIFN 149
           L+ AR +F+
Sbjct: 287 LETARQLFD 295

[Close]

BLAST of CsaV3_6G002120 vs. Swiss-Prot
Match: sp|Q9SJZ3|PP169_ARATH (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.7e-08
Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 80  MMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGS 139
           M  EGV PD  T IG+  +  ML D+N+ KE   Y  E G+     +  AL+DM SKCG 
Sbjct: 248 MESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGD 307

Query: 140 LQEARSIFNS 150
           + EAR IF++
Sbjct: 308 IHEARRIFDN 317

[Close]

BLAST of CsaV3_6G002120 vs. Swiss-Prot
Match: sp|Q9CA56|PP121_ARATH (Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E69 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.9e-07
Identity = 25/71 (35.21%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 78  ARMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKC 137
           + M+ +G +PD  T   V         + + KE+ GY L  G+D    +G+AL++M SKC
Sbjct: 540 SEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKC 599

Query: 138 GSLQEARSIFN 149
           GSL+ AR +++
Sbjct: 600 GSLKLARQVYD 610

[Close]

BLAST of CsaV3_6G002120 vs. Swiss-Prot
Match: sp|Q9FLX6|PP430_ARATH (Pentatricopeptide repeat-containing protein At5g52850, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H31 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.1e-07
Identity = 26/70 (37.14%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 80  MMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGS 139
           MM  G  P+  TF  V ++   LRD++    V G  ++ G + N++VG++L D+ SKCG 
Sbjct: 115 MMASGTHPNEFTFSSVVRSCAGLRDISYGGRVHGSVIKTGFEGNSVVGSSLSDLYSKCGQ 174

Query: 140 LQEARSIFNS 150
            +EA  +F+S
Sbjct: 175 FKEACELFSS 184

[Close]

BLAST of CsaV3_6G002120 vs. TrEMBL
Match: tr|A0A1S4E171|A0A1S4E171_CUCME (pentatricopeptide repeat-containing protein At2g27610-like OS=Cucumis melo OX=3656 GN=LOC103496600 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 8.8e-47
Identity = 141/343 (41.11%), Postives = 145/343 (42.27%), Query Frame = 0


Query: 1   MSFSINFPVSPPVQSIVFSSRTPNYQIRNSALTITHSAIQKPFATSGIKTPNSVKVDKTD 60
           MSFSI F VS PVQSIVF  RTPNYQIR SALTITHSA QK  ATSGIK PNSVKVDKTD
Sbjct: 1   MSFSIIFAVSQPVQSIVFPPRTPNYQIRTSALTITHSATQKAIATSGIKIPNSVKVDKTD 60

Query: 61  SHLQIQPLVDLLRDCVDA------------------------------------------ 120
           SHL+IQPLVDLLR CVDA                                          
Sbjct: 61  SHLEIQPLVDLLRGCVDARFLKQAKTVHGFLLKSKFSNHDSLVLLNHVAHAYSKCSDIDA 120

Query: 121 ------------------------------------------------------------ 164
                                                                       
Sbjct: 121 ACRVFDQMSQRNIFSWTAIIAGLAENGLFLDGFEFFCEMQSQGIFPDHFAYSGILQICIG 180

[Close]

BLAST of CsaV3_6G002120 vs. TrEMBL
Match: tr|A0A0A0KBQ4|A0A0A0KBQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G013890 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.5e-42
Identity = 130/317 (41.01%), Postives = 131/317 (41.32%), Query Frame = 0


Query: 27  IRNSALTITHSAIQKPFATSGIKTPNSVKVDKTDSHLQIQPLVDLLRDCVDA-------- 86
           IRNSALTITHSAIQKPFATSGIKTPNSVKVDKTDSHLQIQPLVDLLRDCVDA        
Sbjct: 17  IRNSALTITHSAIQKPFATSGIKTPNSVKVDKTDSHLQIQPLVDLLRDCVDARFLKQAKT 76

Query: 87  ------------------------------------------------------------ 146
                                                                       
Sbjct: 77  VHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAEN 136

Query: 147 ------------------------------------------------------------ 164
                                                                       
Sbjct: 137 GLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVS 196

[Close]

BLAST of CsaV3_6G002120 vs. TrEMBL
Match: tr|A0A2P4H490|A0A2P4H490_QUESU (Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_58366 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.8e-15
Identity = 47/77 (61.04%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 79  RMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCG 138
           RM   G+TP+  T I V+KA+G L DV K KEV  Y  ELG++SN LVGTA+IDM SKCG
Sbjct: 252 RMKKGGITPNISTLISVSKAVGNLGDVRKGKEVQNYVSELGLESNVLVGTAIIDMFSKCG 311

Query: 139 SLQEARSIFNSHFITLC 156
           SL +ARSIF+S F T C
Sbjct: 312 SLSDARSIFDSSF-TCC 327

[Close]

BLAST of CsaV3_6G002120 vs. TrEMBL
Match: tr|A0A2I4FUM6|A0A2I4FUM6_9ROSI (putative pentatricopeptide repeat-containing protein At1g56570 OS=Juglans regia OX=51240 GN=LOC109002176 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.2e-14
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 79  RMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCG 138
           RMM  G+TP+  T I V+KA+G L D+ K K+V     ELG++SN LVGTALIDM SKCG
Sbjct: 256 RMMKGGITPNMYTLISVSKAVGNLGDIGKGKKVHQCVSELGLESNVLVGTALIDMLSKCG 315

Query: 139 SLQEARSIFNSHFITLC 156
           SL++ARSIF+S+F T C
Sbjct: 316 SLRDARSIFDSNF-TYC 331

[Close]

BLAST of CsaV3_6G002120 vs. TrEMBL
Match: tr|A0A200R3F5|A0A200R3F5_9MAGN (Pentatricopeptide repeat OS=Macleaya cordata OX=56857 GN=BVC80_1837g38 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.2e-14
Identity = 47/96 (48.96%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 79  RMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCG 138
           +M  EG TP+  TF  V KA+G L DV+K +EV  Y  ELG++SN LVGTALIDM SKCG
Sbjct: 158 KMKKEGFTPNMYTFASVLKAVGKLSDVSKGREVHNYVTELGIESNVLVGTALIDMYSKCG 217

Query: 139 SLQEARSIFNSHFITLCFFFPTNKLTNFL---GCNK 172
            L+EAR +F+ +F       P N + +     GC+K
Sbjct: 218 FLKEARLVFDMNFTDCRENMPWNAMISGYSQGGCSK 253

The following BLAST results are available for this feature:

BLAST of CsaV3_6G002120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656423.1	8.3e-57	45.48	PREDICTED: putative pentatricopeptide repeat-containing protein At3g25970 [Cucum...	[more]
XP_016901974.1	1.3e-46	41.11	PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Cucumis m...	[more]
KGN45817.1	9.9e-42	41.01	hypothetical protein Csa_6G013890 [Cucumis sativus]	[more]
XP_022939229.1	1.3e-36	36.86	pentatricopeptide repeat-containing protein At3g16610-like [Cucurbita moschata]	[more]
XP_023549692.1	2.8e-36	36.56	pentatricopeptide repeat-containing protein At3g16610-like [Cucurbita pepo subsp...	[more]

BLAST of CsaV3_6G002120 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03540.1	4.9e-11	44.78	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G11290.1	7.1e-10	42.03	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G22410.1	2.1e-09	44.29	SLOW GROWTH 1	[more]
AT1G74600.1	1.0e-08	35.21	pentatricopeptide (PPR) repeat-containing protein	[more]
AT5G52850.1	2.3e-08	37.14	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of CsaV3_6G002120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LR69\|PPR8_ARATH	8.9e-10	44.78	Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana OX...	[more]
sp\|Q3E6Q1\|PPR32_ARATH	1.3e-08	42.03	Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop...	[more]
sp\|Q9SJZ3\|PP169_ARATH	3.7e-08	44.29	Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidop...	[more]
sp\|Q9CA56\|PP121_ARATH	1.9e-07	35.21	Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidop...	[more]
sp\|Q9FLX6\|PP430_ARATH	4.1e-07	37.14	Pentatricopeptide repeat-containing protein At5g52850, chloroplastic OS=Arabidop...	[more]

BLAST of CsaV3_6G002120 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E171\|A0A1S4E171_CUCME	8.8e-47	41.11	pentatricopeptide repeat-containing protein At2g27610-like OS=Cucumis melo OX=36...	[more]
tr\|A0A0A0KBQ4\|A0A0A0KBQ4_CUCSA	6.5e-42	41.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G013890 PE=4 SV=1	[more]
tr\|A0A2P4H490\|A0A2P4H490_QUESU	1.8e-15	61.04	Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_5...	[more]
tr\|A0A2I4FUM6\|A0A2I4FUM6_9ROSI	1.2e-14	59.74	putative pentatricopeptide repeat-containing protein At1g56570 OS=Juglans regia ...	[more]
tr\|A0A200R3F5\|A0A200R3F5_9MAGN	1.2e-14	48.96	Pentatricopeptide repeat OS=Macleaya cordata OX=56857 GN=BVC80_1837g38 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G002120.1	CsaV3_6G002120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 68..167 e-value: 1.8E-7 score: 32.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..226
None	No IPR available	PANTHER	PTHR24015:SF661	SUBFAMILY NOT NAMED	coord: 79..161
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 79..161

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G002120	CmaCh04G028800	Cucurbita maxima (Rimu)	cmacucB0906
CsaV3_6G002120	CmoCh04G030070	Cucurbita moschata (Rifu)	cmocucB0899
CsaV3_6G002120	Cp4.1LG01g21810	Cucurbita pepo (Zucchini)	cpecucB0569
CsaV3_6G002120	Carg02144	Silver-seed gourd	carcucB0300
CsaV3_6G002120	Carg05954	Silver-seed gourd	carcucB0024
CsaV3_6G002120	Cla97C11G212790	Watermelon (97103) v2	cucwmbB441
CsaV3_6G002120	Bhi04G001856	Wax gourd	cucwgoB605

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G002120	Cucumber (Chinese Long) v3	cuccucB179
CsaV3_6G002120	Cucumber (Chinese Long) v3	cuccucB203
CsaV3_6G002120	Silver-seed gourd	carcucB0711
CsaV3_6G002120	Cucumber (Gy14) v2	cgybcucB189
CsaV3_6G002120	Cucumber (Gy14) v2	cgybcucB242
CsaV3_6G002120	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G002120	Cucumber (Gy14) v1	cgycucB187
CsaV3_6G002120	Cucumber (Gy14) v1	cgycucB218
CsaV3_6G002120	Cucumber (Gy14) v1	cgycucB506
CsaV3_6G002120	Cucurbita maxima (Rimu)	cmacucB0363
CsaV3_6G002120	Cucurbita maxima (Rimu)	cmacucB0811
CsaV3_6G002120	Cucurbita maxima (Rimu)	cmacucB0912
CsaV3_6G002120	Cucurbita maxima (Rimu)	cmacucB0913
CsaV3_6G002120	Cucurbita moschata (Rifu)	cmocucB0358
CsaV3_6G002120	Cucurbita moschata (Rifu)	cmocucB0795
CsaV3_6G002120	Cucurbita moschata (Rifu)	cmocucB0903
CsaV3_6G002120	Cucurbita pepo (Zucchini)	cpecucB0094
CsaV3_6G002120	Cucurbita pepo (Zucchini)	cpecucB0238
CsaV3_6G002120	Cucurbita pepo (Zucchini)	cpecucB0574
CsaV3_6G002120	Wild cucumber (PI 183967)	cpicucB240
CsaV3_6G002120	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G002120	Bottle gourd (USVL1VR-Ls)	cuclsiB459
CsaV3_6G002120	Bottle gourd (USVL1VR-Ls)	cuclsiB473
CsaV3_6G002120	Bottle gourd (USVL1VR-Ls)	cuclsiB487
CsaV3_6G002120	Melon (DHL92) v3.5.1	cucmeB465
CsaV3_6G002120	Melon (DHL92) v3.5.1	cucmeB487
CsaV3_6G002120	Melon (DHL92) v3.5.1	cucmeB525
CsaV3_6G002120	Melon (DHL92) v3.6.1	cucmedB473
CsaV3_6G002120	Melon (DHL92) v3.6.1	cucmedB513
CsaV3_6G002120	Watermelon (Charleston Gray)	cucwcgB452
CsaV3_6G002120	Watermelon (Charleston Gray)	cucwcgB488
CsaV3_6G002120	Watermelon (Charleston Gray)	cucwcgB510
CsaV3_6G002120	Watermelon (97103) v1	cucwmB508
CsaV3_6G002120	Watermelon (97103) v1	cucwmB511
CsaV3_6G002120	Watermelon (97103) v1	cucwmB533
CsaV3_6G002120	Watermelon (97103) v1	cucwmB558
CsaV3_6G002120	Watermelon (97103) v2	cucwmbB476
CsaV3_6G002120	Watermelon (97103) v2	cucwmbB500
CsaV3_6G002120	Wax gourd	cucwgoB646