CmoCh04G030070 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G030070
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Pentatricopeptide repeat-containing protein) (3.4.24.-) (3.6.4.3)
Location	Cmo_Chr04 : 21146076 .. 21147169 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTTGACCTTAGCAACAACAACCAAACGGATGAGGGTATCTCCTAGTAAGAAGTAAAGAGCCACAAATTCCAAGGCGGAACAGGAAGCAATGGTGGCAACGGCGCTACTTGCAGAGCTAAGGCTCCACGATAAACCATTATGAGTTTATCCAACTTTGCCGTTGCTCAACCTGCTCTTTCCTTCTCGAACGCGCCAATGTTCAGTCTAATCTCTCATTCCCCAAGCAATGTCTTCTTCTTCTTCCAGAATTCGGATTTATTTTCGTAATGGCTACAAATTTTTGACAGATAAGGAATTTAGCGTTAACACTAACGCCTCCTGCGTGATTGTGTGGACGTAAGATTTCTGAAACAAGCCAAGACTGTTCATGTGTTTTTGTTAAAATCGAAATTTTAAAACCATGATTCTCTGGTCTTGCTTAATATTGTTGCTCACGCTCACTCGAAATGCTCCGATATTGGTGCTGCATGCCACCTGTTTGATCAAATGTCCCAGAGAAACATCTTTTCTTGGATTGGCTGATAATGATTTTTTCCTCGATTGGTTTTGAGTAATTCTGTGAAATGCAGAGTCAGGGAGTTTTTCCAGATCAGTTTGCGTATTCTTGTATCTTGGTTTGGAGACCATTATATTGGGCAAAATGGTTCATCCCAGATTGTTATTAGAGGCTTTGCATCTCTTTCTTTTGTGTATACTGCTCTTCTTAATATGTATGCAAGGTTACAAGAGATTCAGGATTCATTCAAGGTGTTTAACACCATGACTGAATTTAATGTAGTCTCGTGGAATGCCATGATCTCAGGGTTCACATTAAATGGTCTTTACTCAGAGGCATGTGATCATTTTCTCAGAATGAAGGGAGAAGGAGTAACACCCGATGCCCAATCGTTTATTGGCATTGCAAAAGCTATGGGTATGTTAGGAGACGTGAGCATGGCAAAAGAAGTTAGCCATTTTGCTTCAGAGTTAGGTGTGGACTCCAATACTCTCGTTGATATGCATTCTAAATGTAGATCTTTGCAAGAGGCAGATCCATCTTTGGCCCTCATTTTACAAATTGTCGGGTTAACGTCCCGCGGAATGCAATGA

mRNA sequence

ATGCATTTGACCTTAGCAACAACAACCAAACGGATGAGGGTATCTCCTAGTAAGAAAGTCAGGGAGTTTTTCCAGATCAGTTTGCGTATTCTTGTATCTTGGTTTGGAGACCATTATATTGGGCAAAATGGTTCATCCCAGATTGTTATTAGAGGCTTTGCATCTCTTTCTTTTGTGTATACTGCTCTTCTTAATATGTATGCAAGGTTACAAGAGATTCAGGATTCATTCAAGGTGTTTAACACCATGACTGAATTTAATGTAGTCTCGTGGAATGCCATGATCTCAGGGTTCACATTAAATGGTCTTTACTCAGAGGCATGTGATCATTTTCTCAGAATGAAGGGAGAAGGAGTAACACCCGATGCCCAATCGTTTATTGGCATTGCAAAAGCTATGGGTATGTTAGGAGACGTGAGCATGGCAAAAGAAGTTAGCCATTTTGCTTCAGAGTTAGGTGTGGACTCCAATACTCTCGTTGATATGCATTCTAAATGTAGATCTTTGCAAGAGGCAGATCCATCTTTGGCCCTCATTTTACAAATTGTCGGGTTAACGTCCCGCGGAATGCAATGA

Coding sequence (CDS)

ATGCATTTGACCTTAGCAACAACAACCAAACGGATGAGGGTATCTCCTAGTAAGAAAGTCAGGGAGTTTTTCCAGATCAGTTTGCGTATTCTTGTATCTTGGTTTGGAGACCATTATATTGGGCAAAATGGTTCATCCCAGATTGTTATTAGAGGCTTTGCATCTCTTTCTTTTGTGTATACTGCTCTTCTTAATATGTATGCAAGGTTACAAGAGATTCAGGATTCATTCAAGGTGTTTAACACCATGACTGAATTTAATGTAGTCTCGTGGAATGCCATGATCTCAGGGTTCACATTAAATGGTCTTTACTCAGAGGCATGTGATCATTTTCTCAGAATGAAGGGAGAAGGAGTAACACCCGATGCCCAATCGTTTATTGGCATTGCAAAAGCTATGGGTATGTTAGGAGACGTGAGCATGGCAAAAGAAGTTAGCCATTTTGCTTCAGAGTTAGGTGTGGACTCCAATACTCTCGTTGATATGCATTCTAAATGTAGATCTTTGCAAGAGGCAGATCCATCTTTGGCCCTCATTTTACAAATTGTCGGGTTAACGTCCCGCGGAATGCAATGA

Homology

[Close]

BLAST of CmoCh04G030070 vs. Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 2.1e-17
Identity = 44/146 (30.14%), Postives = 85/146 (58.22%), Query Frame = 1


Query: 32  VSWFGDHYIGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSW 91
           V+   D  +G+   S ++  GF SL +V  +LL++YA   ++  ++KVF+ M E ++V+W
Sbjct: 131 VTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAW 190

Query: 92  NAMISGFTLNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMGMLGDVSMAKEVSHFASE 151
           N++I+GF  NG   EA   +  M  +G+ PD  + + +  A   +G +++ K V  +  +
Sbjct: 191 NSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK 250

Query: 152 LGV-----DSNTLVDMHSKCRSLQEA 173
           +G+      SN L+D++++C  ++EA
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEA 276

[Close]

BLAST of CmoCh04G030070 vs. Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-15
Identity = 42/138 (30.43%), Postives = 77/138 (55.80%), Query Frame = 1


Query: 40  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISGFT 99
           IG+      V+ GF   ++V  AL+  Y++  +++ + +VF+ M E ++V+WN+++SGF 
Sbjct: 125 IGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFE 184

Query: 100 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMGMLGDVSMAKEVSHFASELGVDSN-- 159
            NGL  EA   F +M+  G  PD+ +F+ +  A    G VS+   V  +    G+D N  
Sbjct: 185 QNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVK 244

Query: 160 ---TLVDMHSKCRSLQEA 173
               L++++S+C  + +A
Sbjct: 245 LGTALINLYSRCGDVGKA 262

[Close]

BLAST of CmoCh04G030070 vs. Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.6e-15
Identity = 45/138 (32.61%), Postives = 77/138 (55.80%), Query Frame = 1


Query: 40  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISGFT 99
           +G+     +V  GF+   F  T L NMYA+ +++ ++ KVF+ M E ++VSWN +++G++
Sbjct: 153 VGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYS 212

Query: 100 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMGMLGDVSMAKEVSHFASELGVD---- 159
            NG+   A +    M  E + P   + + +  A+  L  +S+ KE+  +A   G D    
Sbjct: 213 QNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVN 272

Query: 160 -SNTLVDMHSKCRSLQEA 173
            S  LVDM++KC SL+ A
Sbjct: 273 ISTALVDMYAKCGSLETA 290

[Close]

BLAST of CmoCh04G030070 vs. Swiss-Prot
Match: PP184_ARATH (Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2)

HSP 1 Score: 81.6 bits (200), Expect = 9.9e-15
Identity = 52/166 (31.33%), Postives = 85/166 (51.20%), Query Frame = 1


Query: 18  KKVREFFQISLRILVSWFG------DHYIGQNGSSQIVIRGFASLSFVYTALLNMYARLQ 77
           K   E F+   R LVS  G      D   G+      + +     +F+ + L++MY +  
Sbjct: 223 KMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCG 282

Query: 78  EIQDSFKVFNTMTEFNVVSWNAMISGFTLNGLYSEACDHFLRMKGEGVTPDAQSFIGIAK 137
           ++  + +VFN M + + V+W AMI+ ++ NG  SEA   F  M+  GV+PDA +   +  
Sbjct: 283 DLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLS 342

Query: 138 AMGMLGDVSMAKEVSHFASELGVDSNT-----LVDMHSKCRSLQEA 173
           A G +G + + K++   ASEL +  N      LVDM+ KC  ++EA
Sbjct: 343 ACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEA 388

[Close]

BLAST of CmoCh04G030070 vs. Swiss-Prot
Match: PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-13
Identity = 46/131 (35.11%), Postives = 71/131 (54.20%), Query Frame = 1


Query: 48  IVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISGFTLNGLYSEA 107
           IV  G+A   FV  +L++ YA   E+  + KVF+ M+E NVVSW +MI G+       +A
Sbjct: 160 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDA 219

Query: 108 CDHFLRM-KGEGVTPDAQSFIGIAKAMGMLGDVSMAKEVSHFASELGVDSN-----TLVD 167
            D F RM + E VTP++ + + +  A   L D+   ++V  F    G++ N      LVD
Sbjct: 220 VDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVD 279

Query: 168 MHSKCRSLQEA 173
           M+ KC ++  A
Sbjct: 280 MYMKCNAIDVA 290

[Close]

BLAST of CmoCh04G030070 vs. TrEMBL
Match: A0A0A0KBQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013890 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 8.4e-45
Identity = 100/138 (72.46%), Postives = 114/138 (82.61%), Query Frame = 1


Query: 40  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISGFT 99
           +G    +QIVIRGF S +FV TALLNMYA+LQEI+DS+KVFNTMTE NVVSWNAMI+GFT
Sbjct: 176 LGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFT 235

Query: 100 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMGMLGDVSMAKEVSHFASELGVDSNTL 159
            N LY +A D FLRM GEGVTPDAQ+FIG+AKA+GML DV+ AKEVS +A ELGVDSNTL
Sbjct: 236 SNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTL 295

Query: 160 V-----DMHSKCRSLQEA 173
           V     DM+SKC SLQEA
Sbjct: 296 VGTALIDMNSKCGSLQEA 313

[Close]

BLAST of CmoCh04G030070 vs. TrEMBL
Match: V4SCU5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004388mg PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.1e-36
Identity = 81/138 (58.70%), Postives = 104/138 (75.36%), Query Frame = 1


Query: 40  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISGFT 99
           +G+   +QI+I+GFAS + V T+LLNMYA+L  ++DS K+FNTMTE N VSWNAMISGFT
Sbjct: 186 LGKMVHAQIIIKGFASHTVVTTSLLNMYAKLGRVEDSHKMFNTMTEHNEVSWNAMISGFT 245

Query: 100 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMGMLGDVSMAKEVSHFASELGVDSN-- 159
            NGL+SEA DHFL MK EGVTP+  + IG++KA+G L DV   KE+  FAS+LG+DSN  
Sbjct: 246 SNGLHSEAFDHFLLMKSEGVTPNMLTIIGVSKAIGQLRDVDKGKELQSFASKLGMDSNVE 305

Query: 160 ---TLVDMHSKCRSLQEA 173
                +DM+SKC SL +A
Sbjct: 306 VETAFIDMYSKCGSLCDA 323

[Close]

BLAST of CmoCh04G030070 vs. TrEMBL
Match: M5XS64_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa014747mg PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.5e-33
Identity = 76/138 (55.07%), Postives = 104/138 (75.36%), Query Frame = 1


Query: 40  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISGFT 99
           +G+   +Q+ +RGFAS +FV T+LLNMYA+  +I+DS K+FNTMTE N VSWNAMISG T
Sbjct: 109 LGKMVHAQVFVRGFASDTFVSTSLLNMYAKFGKIEDSCKMFNTMTEHNKVSWNAMISGLT 168

Query: 100 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMGMLGDVSMAKEVSHFASELGVDSN-- 159
            NGL+ EA D+FLRMK EG+TP+  + I ++KA G LGDV+ +K V  +ASEL ++S+  
Sbjct: 169 SNGLHFEAFDYFLRMKKEGITPNMYTLISVSKAAGKLGDVNKSKVVHSYASELEMESSVQ 228

Query: 160 ---TLVDMHSKCRSLQEA 173
               L+DM+SKC+SL +A
Sbjct: 229 VGTALIDMYSKCKSLSDA 246

[Close]

BLAST of CmoCh04G030070 vs. TrEMBL
Match: F6HC58_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g02260 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.0e-31
Identity = 76/138 (55.07%), Postives = 99/138 (71.74%), Query Frame = 1


Query: 40  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISGFT 99
           +G+   +QIV+RGFA+  FV T+LLNMYA+L  I+DS+ VFN MTE N VSWNAMISG T
Sbjct: 185 LGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCT 244

Query: 100 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMGMLGDVSMAKEVSHFASELGVDSNTL 159
            NGL+ EA D F+RMK    TP+  + + ++KA+G L DV+M KEV + ASELG++ N L
Sbjct: 245 SNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVL 304

Query: 160 V-----DMHSKCRSLQEA 173
           V     DM+SKC SL +A
Sbjct: 305 VGTALIDMYSKCGSLHDA 322

[Close]

BLAST of CmoCh04G030070 vs. TrEMBL
Match: A0A068V210_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042072001 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.9e-31
Identity = 72/138 (52.17%), Postives = 97/138 (70.29%), Query Frame = 1


Query: 40  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISGFT 99
           +G+   ++I+I GFAS  FV T+LLNMYA+L ++++S KVF++M E N VSWNAMISGFT
Sbjct: 193 LGEMVHARILITGFASHVFVSTSLLNMYAKLGDVEESLKVFDSMNEHNEVSWNAMISGFT 252

Query: 100 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMGMLGDVSMAKEVSHFASELGVDSN-- 159
            NGLY EA +HFL M      PD  S I + KA+GMLGD    K+V ++AS LG+DSN  
Sbjct: 253 ANGLYLEAFNHFLMMMEHRYAPDMYSIISVLKAVGMLGDAGKGKQVHNYASNLGLDSNVR 312

Query: 160 ---TLVDMHSKCRSLQEA 173
               L+DM++KC +L +A
Sbjct: 313 VGTALIDMYAKCGALSDA 330

[Close]

BLAST of CmoCh04G030070 vs. TAIR10
Match: AT4G21065.1 (AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-18
Identity = 44/146 (30.14%), Postives = 85/146 (58.22%), Query Frame = 1


Query: 32  VSWFGDHYIGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSW 91
           V+   D  +G+   S ++  GF SL +V  +LL++YA   ++  ++KVF+ M E ++V+W
Sbjct: 131 VTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAW 190

Query: 92  NAMISGFTLNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMGMLGDVSMAKEVSHFASE 151
           N++I+GF  NG   EA   +  M  +G+ PD  + + +  A   +G +++ K V  +  +
Sbjct: 191 NSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK 250

Query: 152 LGV-----DSNTLVDMHSKCRSLQEA 173
           +G+      SN L+D++++C  ++EA
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEA 276

[Close]

BLAST of CmoCh04G030070 vs. TAIR10
Match: AT2G33760.1 (AT2G33760.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-16
Identity = 42/138 (30.43%), Postives = 77/138 (55.80%), Query Frame = 1


Query: 40  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISGFT 99
           IG+      V+ GF   ++V  AL+  Y++  +++ + +VF+ M E ++V+WN+++SGF 
Sbjct: 125 IGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFE 184

Query: 100 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMGMLGDVSMAKEVSHFASELGVDSN-- 159
            NGL  EA   F +M+  G  PD+ +F+ +  A    G VS+   V  +    G+D N  
Sbjct: 185 QNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVK 244

Query: 160 ---TLVDMHSKCRSLQEA 173
               L++++S+C  + +A
Sbjct: 245 LGTALINLYSRCGDVGKA 262

[Close]

BLAST of CmoCh04G030070 vs. TAIR10
Match: AT1G11290.1 (AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 82.0 bits (201), Expect = 4.3e-16
Identity = 45/138 (32.61%), Postives = 77/138 (55.80%), Query Frame = 1


Query: 40  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISGFT 99
           +G+     +V  GF+   F  T L NMYA+ +++ ++ KVF+ M E ++VSWN +++G++
Sbjct: 153 VGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYS 212

Query: 100 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMGMLGDVSMAKEVSHFASELGVD---- 159
            NG+   A +    M  E + P   + + +  A+  L  +S+ KE+  +A   G D    
Sbjct: 213 QNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVN 272

Query: 160 -SNTLVDMHSKCRSLQEA 173
            S  LVDM++KC SL+ A
Sbjct: 273 ISTALVDMYAKCGSLETA 290

[Close]

BLAST of CmoCh04G030070 vs. TAIR10
Match: AT2G34400.1 (AT2G34400.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 81.6 bits (200), Expect = 5.6e-16
Identity = 52/166 (31.33%), Postives = 85/166 (51.20%), Query Frame = 1


Query: 18  KKVREFFQISLRILVSWFG------DHYIGQNGSSQIVIRGFASLSFVYTALLNMYARLQ 77
           K   E F+   R LVS  G      D   G+      + +     +F+ + L++MY +  
Sbjct: 223 KMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCG 282

Query: 78  EIQDSFKVFNTMTEFNVVSWNAMISGFTLNGLYSEACDHFLRMKGEGVTPDAQSFIGIAK 137
           ++  + +VFN M + + V+W AMI+ ++ NG  SEA   F  M+  GV+PDA +   +  
Sbjct: 283 DLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLS 342

Query: 138 AMGMLGDVSMAKEVSHFASELGVDSNT-----LVDMHSKCRSLQEA 173
           A G +G + + K++   ASEL +  N      LVDM+ KC  ++EA
Sbjct: 343 ACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEA 388

[Close]

BLAST of CmoCh04G030070 vs. TAIR10
Match: AT3G61170.1 (AT3G61170.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 80.9 bits (198), Expect = 9.5e-16
Identity = 50/140 (35.71%), Postives = 76/140 (54.29%), Query Frame = 1


Query: 40  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISGFT 99
           I  +    IV  G+A+   V  AL++MYA+   +  + KVF  M E +V+SW A+++G T
Sbjct: 347 IASSAHCLIVKTGYATYKLVNNALVDMYAKRGIMDSALKVFEGMIEKDVISWTALVTGNT 406

Query: 100 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMGMLGDVSMAKEV------SHFASELG 159
            NG Y EA   F  M+  G+TPD      +  A   L  +   ++V      S F S L 
Sbjct: 407 HNGSYDEALKLFCNMRVGGITPDKIVTASVLSASAELTLLEFGQQVHGNYIKSGFPSSLS 466

Query: 160 VDSNTLVDMHSKCRSLQEAD 174
           V +N+LV M++KC SL++A+
Sbjct: 467 V-NNSLVTMYTKCGSLEDAN 485

[Close]

BLAST of CmoCh04G030070 vs. NCBI nr
Match: gi|659113785|ref|XP_008456754.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Cucumis melo])

HSP 1 Score: 193.0 bits (489), Expect = 4.9e-46
Identity = 102/138 (73.91%), Postives = 115/138 (83.33%), Query Frame = 1


Query: 40  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISGFT 99
           +G+   +QIVIRGF S +FV TALLNMYA+LQEI+DS KVFNTMTE NVVSWNAMI+GFT
Sbjct: 186 LGKMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSCKVFNTMTEVNVVSWNAMITGFT 245

Query: 100 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMGMLGDVSMAKEVSHFASELGVDSNTL 159
            NG Y +A D FLRMKGEGVTPDAQ+FIG+AKA+GML DV+ AKEVS +A ELGVDSNTL
Sbjct: 246 SNGFYLDAFDLFLRMKGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTL 305

Query: 160 V-----DMHSKCRSLQEA 173
           V     DMHSKC SLQEA
Sbjct: 306 VGTALIDMHSKCGSLQEA 323

[Close]

BLAST of CmoCh04G030070 vs. NCBI nr
Match: gi|778709607|ref|XP_011656423.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g25970 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 1.2e-44
Identity = 100/138 (72.46%), Postives = 114/138 (82.61%), Query Frame = 1


Query: 40  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISGFT 99
           +G    +QIVIRGF S +FV TALLNMYA+LQEI+DS+KVFNTMTE NVVSWNAMI+GFT
Sbjct: 186 LGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFT 245

Query: 100 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMGMLGDVSMAKEVSHFASELGVDSNTL 159
            N LY +A D FLRM GEGVTPDAQ+FIG+AKA+GML DV+ AKEVS +A ELGVDSNTL
Sbjct: 246 SNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTL 305

Query: 160 V-----DMHSKCRSLQEA 173
           V     DM+SKC SLQEA
Sbjct: 306 VGTALIDMNSKCGSLQEA 323

[Close]

BLAST of CmoCh04G030070 vs. NCBI nr
Match: gi|700190613|gb|KGN45817.1| (hypothetical protein Csa_6G013890 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 1.2e-44
Identity = 100/138 (72.46%), Postives = 114/138 (82.61%), Query Frame = 1


Query: 40  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISGFT 99
           +G    +QIVIRGF S +FV TALLNMYA+LQEI+DS+KVFNTMTE NVVSWNAMI+GFT
Sbjct: 176 LGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFT 235

Query: 100 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMGMLGDVSMAKEVSHFASELGVDSNTL 159
            N LY +A D FLRM GEGVTPDAQ+FIG+AKA+GML DV+ AKEVS +A ELGVDSNTL
Sbjct: 236 SNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTL 295

Query: 160 V-----DMHSKCRSLQEA 173
           V     DM+SKC SLQEA
Sbjct: 296 VGTALIDMNSKCGSLQEA 313

[Close]

BLAST of CmoCh04G030070 vs. NCBI nr
Match: gi|568874190|ref|XP_006490200.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g27110-like [Citrus sinensis])

HSP 1 Score: 164.1 bits (414), Expect = 2.4e-37
Identity = 83/138 (60.14%), Postives = 106/138 (76.81%), Query Frame = 1


Query: 40  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISGFT 99
           +G+   +QI+I+GFAS + V T+LLNMYA+L  ++DS+K+FNTMTE N VSWNAMISGFT
Sbjct: 186 LGKMVHAQIIIKGFASHTVVTTSLLNMYAKLGRVEDSYKMFNTMTEHNEVSWNAMISGFT 245

Query: 100 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMGMLGDVSMAKEVSHFASELGVDSN-- 159
            NGL+SEA DHFL MK EGVTP+  + IG++KA+G L DV   KEV  FASELG++SN  
Sbjct: 246 SNGLHSEAFDHFLLMKSEGVTPNMLTIIGVSKAVGQLHDVDRGKEVQSFASELGLESNVQ 305

Query: 160 ---TLVDMHSKCRSLQEA 173
               L+DM+SKC SL +A
Sbjct: 306 VGTALIDMYSKCGSLNDA 323

[Close]

BLAST of CmoCh04G030070 vs. NCBI nr
Match: gi|567857726|ref|XP_006421546.1| (hypothetical protein CICLE_v10004388mg [Citrus clementina])

HSP 1 Score: 158.7 bits (400), Expect = 1.0e-35
Identity = 81/138 (58.70%), Postives = 104/138 (75.36%), Query Frame = 1


Query: 40  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISGFT 99
           +G+   +QI+I+GFAS + V T+LLNMYA+L  ++DS K+FNTMTE N VSWNAMISGFT
Sbjct: 186 LGKMVHAQIIIKGFASHTVVTTSLLNMYAKLGRVEDSHKMFNTMTEHNEVSWNAMISGFT 245

Query: 100 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMGMLGDVSMAKEVSHFASELGVDSN-- 159
            NGL+SEA DHFL MK EGVTP+  + IG++KA+G L DV   KE+  FAS+LG+DSN  
Sbjct: 246 SNGLHSEAFDHFLLMKSEGVTPNMLTIIGVSKAIGQLRDVDKGKELQSFASKLGMDSNVE 305

Query: 160 ---TLVDMHSKCRSLQEA 173
                +DM+SKC SL +A
Sbjct: 306 VETAFIDMYSKCGSLCDA 323

The following BLAST results are available for this feature:

BLAST of CmoCh04G030070 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP330_ARATH	2.1e-17	30.14	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN...	[more]
PP182_ARATH	2.6e-15	30.43	Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN...	[more]
PPR32_ARATH	7.6e-15	32.61	Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop...	[more]
PP184_ARATH	9.9e-15	31.33	Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN...	[more]
PP249_ARATH	1.1e-13	35.11	Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN...	[more]

BLAST of CmoCh04G030070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBQ4_CUCSA	8.4e-45	72.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013890 PE=4 SV=1	[more]
V4SCU5_9ROSI	7.1e-36	58.70	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004388mg PE=4 SV=1	[more]
M5XS64_PRUPE	2.5e-33	55.07	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa014747mg PE=4 S...	[more]
F6HC58_VITVI	4.0e-31	55.07	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g02260 PE=4 SV=...	[more]
A0A068V210_COFCA	6.9e-31	52.17	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042072001 PE=4 SV=1	[more]

BLAST of CmoCh04G030070 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21065.1	1.2e-18	30.14	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G33760.1	1.5e-16	30.43	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G11290.1	4.3e-16	32.61	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G34400.1	5.6e-16	31.33	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT3G61170.1	9.5e-16	35.71	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CmoCh04G030070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113785\|ref\|XP_008456754.1\|	4.9e-46	73.91	PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Cucumis m...	[more]
gi\|778709607\|ref\|XP_011656423.1\|	1.2e-44	72.46	PREDICTED: putative pentatricopeptide repeat-containing protein At3g25970 [Cucum...	[more]
gi\|700190613\|gb\|KGN45817.1\|	1.2e-44	72.46	hypothetical protein Csa_6G013890 [Cucumis sativus]	[more]
gi\|568874190\|ref\|XP_006490200.1\|	2.4e-37	60.14	PREDICTED: pentatricopeptide repeat-containing protein At5g27110-like [Citrus si...	[more]
gi\|567857726\|ref\|XP_006421546.1\|	1.0e-35	58.70	hypothetical protein CICLE_v10004388mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G030070.1	CmoCh04G030070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 87..126 score: 3.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 59..88 score: 6.7E-4coord: 89..123 score: 2.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 87..121 score: 11.345coord: 122..156 score: 5.196coord: 56..86 score:
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 47..172 score: 5.3
None	No IPR available	PANTHER	PTHR24015:SF661	SUBFAMILY NOT NAMED	coord: 47..172 score: 5.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G030070	CmaCh04G028800	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G030070	Cp4.1LG01g21810	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G030070	CsaV3_6G002120	Cucumber (Chinese Long) v3	cmocucB0899
CmoCh04G030070	Carg05954	Silver-seed gourd	carcmoB0033

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G030070	Melon (DHL92) v3.5.1	cmomeB668
CmoCh04G030070	Melon (DHL92) v3.5.1	cmomeB701
CmoCh04G030070	Watermelon (Charleston Gray)	cmowcgB621
CmoCh04G030070	Watermelon (Charleston Gray)	cmowcgB650
CmoCh04G030070	Watermelon (97103) v1	cmowmB714
CmoCh04G030070	Watermelon (97103) v1	cmowmB731
CmoCh04G030070	Cucurbita pepo (Zucchini)	cmocpeB654
CmoCh04G030070	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G030070	Bottle gourd (USVL1VR-Ls)	cmolsiB629
CmoCh04G030070	Bottle gourd (USVL1VR-Ls)	cmolsiB645
CmoCh04G030070	Cucumber (Gy14) v2	cgybcmoB525
CmoCh04G030070	Cucumber (Gy14) v2	cgybcmoB816
CmoCh04G030070	Melon (DHL92) v3.6.1	cmomedB756
CmoCh04G030070	Melon (DHL92) v3.6.1	cmomedB795
CmoCh04G030070	Silver-seed gourd	carcmoB0370
CmoCh04G030070	Silver-seed gourd	carcmoB0925
CmoCh04G030070	Cucumber (Chinese Long) v3	cmocucB0838
CmoCh04G030070	Watermelon (97103) v2	cmowmbB697
CmoCh04G030070	Watermelon (97103) v2	cmowmbB723
CmoCh04G030070	Wax gourd	cmowgoB0857
CmoCh04G030070	Wax gourd	cmowgoB0879
CmoCh04G030070	Cucurbita moschata (Rifu)	cmocmoB261
CmoCh04G030070	Cucurbita moschata (Rifu)	cmocmoB449
CmoCh04G030070	Cucurbita moschata (Rifu)	cmocmoB466
CmoCh04G030070	Cucumber (Gy14) v1	cgycmoB0350
CmoCh04G030070	Cucumber (Gy14) v1	cgycmoB0903
CmoCh04G030070	Cucurbita maxima (Rimu)	cmacmoB308
CmoCh04G030070	Cucurbita maxima (Rimu)	cmacmoB659
CmoCh04G030070	Cucurbita maxima (Rimu)	cmacmoB734
CmoCh04G030070	Cucurbita maxima (Rimu)	cmacmoB736
CmoCh04G030070	Wild cucumber (PI 183967)	cmocpiB719
CmoCh04G030070	Wild cucumber (PI 183967)	cmocpiB768
CmoCh04G030070	Cucumber (Chinese Long) v2	cmocuB709
CmoCh04G030070	Cucumber (Chinese Long) v2	cmocuB759