Carg05954 (gene) Silver-seed gourd

Overview
NameCarg05954
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat-containing protein
LocationCucurbita_argyrosperma_scaffold_026 : 418444 .. 419303 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCTTCTTCCAGAATTCGGATTTATTTTCGTAATGGCTACAAATTTTTGACAGATAAGGAATTTAGCGTTAACGCCAACGCCTCCTGCGTGATTGTGTGGACGTAAGATTTCTGAAACAAGCCAAGACTGTTCATGTGTTTTTGTTAAAATCGAAATTTTAAAACCATGATTCTCTGGTCTTGCTTAATATTGTTGCTCACGCTCACTCGAAATGCTCCGATATTGGTGCTGCATGCCACCTGTTTGATCAAATGTTCCAGAGAAACATCTTTTCTTTGATTGGCTGATAATGATTTTTTCCTCGATTGGTTTTGAGTAATTCTGTGAAATGCAGAGTCAGGGAGTTTTTCCAGATCAGTTTGCGTATTCTTGTATCTTGGTTTGGAGACCATTATATTGGGCAAAATGGTTCATCCCAGATTGTTATTAGAGGCTTTGCATCTCTTTCTTTTGTGTATACTGCTCTTCTTAATATGTATGCAAGGTTACAAGAGATTCAGGATTCATTCAAGGTGTTTAACACCATGACTGAATTTAATGTAGTTTCGTGGAATGCCATGATCTCAGTGTTCACATTAAATGGTCTTTACTCAGAGGCATGTGATCATTTTCTCAGAATGAAGGGAGAAGGAGTAACACCCGATGCACAATCGTTTATTGGCATTGCAAAAGCTATGGATGTGTTAGGAGACGTGAGCAAGGCAAAAGAAGTTAGCCATTTTGCTTCATTGTTAGGTGTGGACTCCAATACTCTCGTTGATATGCATTCTAAATGTAGATCTTTGCAAGAGGCAGATCCATCTTTGACCCTCATTTTACAAATTGTCGGGTTAACGTCCCGCGGAATGCAATGA

mRNA sequence

ATGTCTTCTTCTTCCAGAATTCGGATTTATTTTCGTAATGGCTACAAATTTTTGACAGATAAGGAATTTAGCGTTAACGCCAACGCCTCCTGCGTGATTGTGTGGACAGTCAGGGAGTTTTTCCAGATCAGTTTGCGTATTCTTGTATCTTGGTTTGGAGACCATTATATTGGGCAAAATGGTTCATCCCAGATTGTTATTAGAGGCTTTGCATCTCTTTCTTTTGTGTATACTGCTCTTCTTAATATGTATGCAAGGTTACAAGAGATTCAGGATTCATTCAAGGTGTTTAACACCATGACTGAATTTAATGTAGTTTCGTGGAATGCCATGATCTCAGTGTTCACATTAAATGGTCTTTACTCAGAGGCATGTGATCATTTTCTCAGAATGAAGGGAGAAGGAGTAACACCCGATGCACAATCGTTTATTGGCATTGCAAAAGCTATGGATGTGTTAGGAGACGTGAGCAAGGCAAAAGAAGTTAGCCATTTTGCTTCATTGTTAGGTGTGGACTCCAATACTCTCGTTGATATGCATTCTAAATGTAGATCTTTGCAAGAGGCAGATCCATCTTTGACCCTCATTTTACAAATTGTCGGGTTAACGTCCCGCGGAATGCAATGA

Coding sequence (CDS)

ATGTCTTCTTCTTCCAGAATTCGGATTTATTTTCGTAATGGCTACAAATTTTTGACAGATAAGGAATTTAGCGTTAACGCCAACGCCTCCTGCGTGATTGTGTGGACAGTCAGGGAGTTTTTCCAGATCAGTTTGCGTATTCTTGTATCTTGGTTTGGAGACCATTATATTGGGCAAAATGGTTCATCCCAGATTGTTATTAGAGGCTTTGCATCTCTTTCTTTTGTGTATACTGCTCTTCTTAATATGTATGCAAGGTTACAAGAGATTCAGGATTCATTCAAGGTGTTTAACACCATGACTGAATTTAATGTAGTTTCGTGGAATGCCATGATCTCAGTGTTCACATTAAATGGTCTTTACTCAGAGGCATGTGATCATTTTCTCAGAATGAAGGGAGAAGGAGTAACACCCGATGCACAATCGTTTATTGGCATTGCAAAAGCTATGGATGTGTTAGGAGACGTGAGCAAGGCAAAAGAAGTTAGCCATTTTGCTTCATTGTTAGGTGTGGACTCCAATACTCTCGTTGATATGCATTCTAAATGTAGATCTTTGCAAGAGGCAGATCCATCTTTGACCCTCATTTTACAAATTGTCGGGTTAACGTCCCGCGGAATGCAATGA

Protein sequence

MSSSSRIRIYFRNGYKFLTDKEFSVNANASCVIVWTVREFFQISLRILVSWFGDHYIGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISVFTLNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMDVLGDVSKAKEVSHFASLLGVDSNTLVDMHSKCRSLQEADPSLTLILQIVGLTSRGMQ
Homology
[Close]
BLAST of Carg05954 vs. NCBI nr
Match: XP_022993736.1 (pentatricopeptide repeat-containing protein At2g27610-like [Cucurbita maxima])

HSP 1 Score: 193.7 bits (491), Expect = 6.1e-46
Identity = 101/138 (73.19%), Postives = 117/138 (84.78%), Query Frame = 0 

Query: 57  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISVFT 116
           +G+   +QIVIRGFAS +FV TALLNMYA+LQ+I DS++VFNTMTE NVVSWNAMIS FT
Sbjct: 186 LGKMVHAQIVIRGFASHTFVSTALLNMYAKLQKIDDSYEVFNTMTEVNVVSWNAMISGFT 245

Query: 117 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMDVLGDVSKAKEVSHFASLLGVDSNTL 176
            NGLYS+A DHFLRMKGEGVTPDAQ+FI IAKA+ +L DV+KAKE+S +AS LG+DSNTL
Sbjct: 246 SNGLYSDAFDHFLRMKGEGVTPDAQTFISIAKAIGMLRDVNKAKEISRYASKLGMDSNTL 305

Query: 177 V-----DMHSKCRSLQEA 190
           V     DMHSKC SLQEA
Sbjct: 306 VGTALIDMHSKCGSLQEA 323

[Close]
BLAST of Carg05954 vs. NCBI nr
Match: XP_023549692.1 (pentatricopeptide repeat-containing protein At3g16610-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.4 bits (490), Expect = 7.9e-46
Identity = 101/138 (73.19%), Postives = 117/138 (84.78%), Query Frame = 0 

Query: 57  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISVFT 116
           +G+   +QIVIRGFAS +FV TALLNMYA+LQ+I DS++VFNTMTE NVVSWNAMIS FT
Sbjct: 186 LGKMVHAQIVIRGFASHTFVSTALLNMYAKLQKIDDSYEVFNTMTEVNVVSWNAMISGFT 245

Query: 117 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMDVLGDVSKAKEVSHFASLLGVDSNTL 176
            NGLYS+A DHFLRMKGEGVTPDAQ+FI IAKA+ +L DV+KAKE+S +AS LG+DSNTL
Sbjct: 246 SNGLYSDAFDHFLRMKGEGVTPDAQTFISIAKAIGMLRDVNKAKEISRYASELGMDSNTL 305

Query: 177 V-----DMHSKCRSLQEA 190
           V     DMHSKC SLQEA
Sbjct: 306 VGTGLIDMHSKCGSLQEA 323

[Close]
BLAST of Carg05954 vs. NCBI nr
Match: XP_022939229.1 (pentatricopeptide repeat-containing protein At3g16610-like [Cucurbita moschata])

HSP 1 Score: 191.0 bits (484), Expect = 3.9e-45
Identity = 99/138 (71.74%), Postives = 116/138 (84.06%), Query Frame = 0 

Query: 57  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISVFT 116
           +G+   +QIVIRGFAS +FV TALLNMYA+LQ+I DS++VFNTMTE NVVSWNAMIS FT
Sbjct: 186 LGKMVHAQIVIRGFASHTFVSTALLNMYAKLQKIDDSYEVFNTMTEVNVVSWNAMISGFT 245

Query: 117 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMDVLGDVSKAKEVSHFASLLGVDSN-- 176
            NGLYS+A DHFLRMKGEGVTPDAQ+FI IAKA+ +L DV+KAKE+S +AS LG+DSN  
Sbjct: 246 SNGLYSDAFDHFLRMKGEGVTPDAQTFISIAKAIGMLRDVNKAKEISRYASELGMDSNPL 305

Query: 177 ---TLVDMHSKCRSLQEA 190
               L+DMHSKC SLQEA
Sbjct: 306 VGTALIDMHSKCGSLQEA 323

[Close]
BLAST of Carg05954 vs. NCBI nr
Match: XP_022134356.1 (pentatricopeptide repeat-containing protein At2g33680-like [Momordica charantia])

HSP 1 Score: 189.5 bits (480), Expect = 1.1e-44
Identity = 99/138 (71.74%), Postives = 114/138 (82.61%), Query Frame = 0 

Query: 57  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISVFT 116
           +G+   +QIV RGFAS +FV TALL+MY++LQ+I+DS+KVFNTMTE NVVSWNAMIS F 
Sbjct: 178 LGRMVHAQIVSRGFASHTFVSTALLDMYSKLQKIEDSYKVFNTMTEVNVVSWNAMISGFA 237

Query: 117 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMDVLGDVSKAKEVSHFASLLGVDSNTL 176
            N LYSEA DHFLRMKGEG  PDA +FIG+AKA+ +L DVSKAKEVSH+AS LGVDSNTL
Sbjct: 238 SNSLYSEAFDHFLRMKGEGAMPDAHTFIGVAKAIGMLRDVSKAKEVSHYASKLGVDSNTL 297

Query: 177 V-----DMHSKCRSLQEA 190
           V     DMHSKC SLQEA
Sbjct: 298 VGTALIDMHSKCGSLQEA 315

[Close]
BLAST of Carg05954 vs. NCBI nr
Match: XP_016901974.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Cucumis melo])

HSP 1 Score: 184.9 bits (468), Expect = 2.8e-43
Identity = 99/138 (71.74%), Postives = 113/138 (81.88%), Query Frame = 0 

Query: 57  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISVFT 116
           +G+   +QIVIRGF S +FV TALLNMYA+LQEI+DS KVFNTMTE NVVSWNAMI+ FT
Sbjct: 186 LGKMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSCKVFNTMTEVNVVSWNAMITGFT 245

Query: 117 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMDVLGDVSKAKEVSHFASLLGVDSNTL 176
            NG Y +A D FLRMKGEGVTPDAQ+FIG+AKA+ +L DV+KAKEVS +A  LGVDSNTL
Sbjct: 246 SNGFYLDAFDLFLRMKGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTL 305

Query: 177 V-----DMHSKCRSLQEA 190
           V     DMHSKC SLQEA
Sbjct: 306 VGTALIDMHSKCGSLQEA 323

[Close]
BLAST of Carg05954 vs. TAIR10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-16
Identity = 43/146 (29.45%), Postives = 82/146 (56.16%), Query Frame = 0 

Query: 49  VSWFGDHYIGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSW 108
           V+   D  +G+   S ++  GF SL +V  +LL++YA   ++  ++KVF+ M E ++V+W
Sbjct: 131 VTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAW 190

Query: 109 NAMISVFTLNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMDVLGDVSKAKEVSHFASL 168
           N++I+ F  NG   EA   +  M  +G+ PD  + + +  A   +G ++  K V  +   
Sbjct: 191 NSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK 250

Query: 169 LGV-----DSNTLVDMHSKCRSLQEA 190
           +G+      SN L+D++++C  ++EA
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEA 276

[Close]
BLAST of Carg05954 vs. TAIR10
Match: AT1G11290.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-14
Identity = 45/126 (35.71%), Postives = 70/126 (55.56%), Query Frame = 0 

Query: 69  GFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISVFTLNGLYSEACDHF 128
           GF SL  + TAL++MYA+   ++ + ++F+ M E NVVSWN+MI  +  N    EA   F
Sbjct: 266 GFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIF 325

Query: 129 LRMKGEGVTPDAQSFIGIAKAMDVLGDVSKAKEVSHFASLLGVDS-----NTLVDMHSKC 188
            +M  EGV P   S +G   A   LGD+ + + +   +  LG+D      N+L+ M+ KC
Sbjct: 326 QKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKC 385

Query: 189 RSLQEA 190
           + +  A
Sbjct: 386 KEVDTA 391

[Close]
BLAST of Carg05954 vs. TAIR10
Match: AT2G33760.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-14
Identity = 41/138 (29.71%), Postives = 75/138 (54.35%), Query Frame = 0 

Query: 57  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISVFT 116
           IG+      V+ GF   ++V  AL+  Y++  +++ + +VF+ M E ++V+WN+++S F 
Sbjct: 125 IGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFE 184

Query: 117 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMDVLGDVSKAKEVSHFASLLGVDSN-- 176
            NGL  EA   F +M+  G  PD+ +F+ +  A    G VS    V  +    G+D N  
Sbjct: 185 QNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVK 244

Query: 177 ---TLVDMHSKCRSLQEA 190
               L++++S+C  + +A
Sbjct: 245 LGTALINLYSRCGDVGKA 262

[Close]
BLAST of Carg05954 vs. TAIR10
Match: AT2G34400.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-14
Identity = 46/152 (30.26%), Postives = 79/152 (51.97%), Query Frame = 0 

Query: 43  ISLRILVSWFGDHYIGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTE 102
           +S+    S  GD   G+      + +     +F+ + L++MY +  ++  + +VFN M +
Sbjct: 237 VSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIK 296

Query: 103 FNVVSWNAMISVFTLNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMDVLGDVSKAKEV 162
            + V+W AMI+V++ NG  SEA   F  M+  GV+PDA +   +  A   +G +   K++
Sbjct: 297 KDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQI 356

Query: 163 SHFASLLGVDSNT-----LVDMHSKCRSLQEA 190
              AS L +  N      LVDM+ KC  ++EA
Sbjct: 357 ETHASELSLQHNIYVATGLVDMYGKCGRVEEA 388

[Close]
BLAST of Carg05954 vs. TAIR10
Match: AT3G61170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 74.7 bits (182), Expect = 7.5e-14
Identity = 49/140 (35.00%), Postives = 75/140 (53.57%), Query Frame = 0 

Query: 57  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISVFT 116
           I  +    IV  G+A+   V  AL++MYA+   +  + KVF  M E +V+SW A+++  T
Sbjct: 347 IASSAHCLIVKTGYATYKLVNNALVDMYAKRGIMDSALKVFEGMIEKDVISWTALVTGNT 406

Query: 117 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMDVLGDVSKAKEV------SHFASLLG 176
            NG Y EA   F  M+  G+TPD      +  A   L  +   ++V      S F S L 
Sbjct: 407 HNGSYDEALKLFCNMRVGGITPDKIVTASVLSASAELTLLEFGQQVHGNYIKSGFPSSLS 466

Query: 177 VDSNTLVDMHSKCRSLQEAD 191
           V +N+LV M++KC SL++A+
Sbjct: 467 V-NNSLVTMYTKCGSLEDAN 485

[Close]
BLAST of Carg05954 vs. Swiss-Prot
Match: sp|A8MQA3|PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 3.8e-15
Identity = 43/146 (29.45%), Postives = 82/146 (56.16%), Query Frame = 0 

Query: 49  VSWFGDHYIGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSW 108
           V+   D  +G+   S ++  GF SL +V  +LL++YA   ++  ++KVF+ M E ++V+W
Sbjct: 131 VTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAW 190

Query: 109 NAMISVFTLNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMDVLGDVSKAKEVSHFASL 168
           N++I+ F  NG   EA   +  M  +G+ PD  + + +  A   +G ++  K V  +   
Sbjct: 191 NSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK 250

Query: 169 LGV-----DSNTLVDMHSKCRSLQEA 190
           +G+      SN L+D++++C  ++EA
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEA 276

[Close]
BLAST of Carg05954 vs. Swiss-Prot
Match: sp|P93011|PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H6 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.5e-13
Identity = 41/138 (29.71%), Postives = 75/138 (54.35%), Query Frame = 0 

Query: 57  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISVFT 116
           IG+      V+ GF   ++V  AL+  Y++  +++ + +VF+ M E ++V+WN+++S F 
Sbjct: 125 IGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFE 184

Query: 117 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMDVLGDVSKAKEVSHFASLLGVDSN-- 176
            NGL  EA   F +M+  G  PD+ +F+ +  A    G VS    V  +    G+D N  
Sbjct: 185 QNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVK 244

Query: 177 ---TLVDMHSKCRSLQEA 190
               L++++S+C  + +A
Sbjct: 245 LGTALINLYSRCGDVGKA 262

[Close]
BLAST of Carg05954 vs. Swiss-Prot
Match: sp|Q3E6Q1|PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.5e-13
Identity = 45/126 (35.71%), Postives = 70/126 (55.56%), Query Frame = 0 

Query: 69  GFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISVFTLNGLYSEACDHF 128
           GF SL  + TAL++MYA+   ++ + ++F+ M E NVVSWN+MI  +  N    EA   F
Sbjct: 266 GFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIF 325

Query: 129 LRMKGEGVTPDAQSFIGIAKAMDVLGDVSKAKEVSHFASLLGVDS-----NTLVDMHSKC 188
            +M  EGV P   S +G   A   LGD+ + + +   +  LG+D      N+L+ M+ KC
Sbjct: 326 QKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKC 385

Query: 189 RSLQEA 190
           + +  A
Sbjct: 386 KEVDTA 391

[Close]
BLAST of Carg05954 vs. Swiss-Prot
Match: sp|O64705|PP184_ARATH (Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E23 PE=3 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 4.6e-13
Identity = 46/152 (30.26%), Postives = 79/152 (51.97%), Query Frame = 0 

Query: 43  ISLRILVSWFGDHYIGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTE 102
           +S+    S  GD   G+      + +     +F+ + L++MY +  ++  + +VFN M +
Sbjct: 237 VSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIK 296

Query: 103 FNVVSWNAMISVFTLNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMDVLGDVSKAKEV 162
            + V+W AMI+V++ NG  SEA   F  M+  GV+PDA +   +  A   +G +   K++
Sbjct: 297 KDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQI 356

Query: 163 SHFASLLGVDSNT-----LVDMHSKCRSLQEA 190
              AS L +  N      LVDM+ KC  ++EA
Sbjct: 357 ETHASELSLQHNIYVATGLVDMYGKCGRVEEA 388

[Close]
BLAST of Carg05954 vs. Swiss-Prot
Match: sp|Q9LUJ2|PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H56 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.1e-12
Identity = 45/131 (34.35%), Postives = 70/131 (53.44%), Query Frame = 0 

Query: 65  IVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISVFTLNGLYSEA 124
           IV  G+A   FV  +L++ YA   E+  + KVF+ M+E NVVSW +MI  +       +A
Sbjct: 160 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDA 219

Query: 125 CDHFLRM-KGEGVTPDAQSFIGIAKAMDVLGDVSKAKEVSHFASLLGVDSN-----TLVD 184
            D F RM + E VTP++ + + +  A   L D+   ++V  F    G++ N      LVD
Sbjct: 220 VDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVD 279

Query: 185 MHSKCRSLQEA 190
           M+ KC ++  A
Sbjct: 280 MYMKCNAIDVA 290

[Close]
BLAST of Carg05954 vs. TrEMBL
Match: tr|A0A1S4E171|A0A1S4E171_CUCME (pentatricopeptide repeat-containing protein At2g27610-like OS=Cucumis melo OX=3656 GN=LOC103496600 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.9e-43
Identity = 99/138 (71.74%), Postives = 113/138 (81.88%), Query Frame = 0 

Query: 57  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISVFT 116
           +G+   +QIVIRGF S +FV TALLNMYA+LQEI+DS KVFNTMTE NVVSWNAMI+ FT
Sbjct: 186 LGKMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSCKVFNTMTEVNVVSWNAMITGFT 245

Query: 117 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMDVLGDVSKAKEVSHFASLLGVDSNTL 176
            NG Y +A D FLRMKGEGVTPDAQ+FIG+AKA+ +L DV+KAKEVS +A  LGVDSNTL
Sbjct: 246 SNGFYLDAFDLFLRMKGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTL 305

Query: 177 V-----DMHSKCRSLQEA 190
           V     DMHSKC SLQEA
Sbjct: 306 VGTALIDMHSKCGSLQEA 323

[Close]
BLAST of Carg05954 vs. TrEMBL
Match: tr|A0A0A0KBQ4|A0A0A0KBQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G013890 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.6e-42
Identity = 97/138 (70.29%), Postives = 112/138 (81.16%), Query Frame = 0 

Query: 57  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISVFT 116
           +G    +QIVIRGF S +FV TALLNMYA+LQEI+DS+KVFNTMTE NVVSWNAMI+ FT
Sbjct: 176 LGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFT 235

Query: 117 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMDVLGDVSKAKEVSHFASLLGVDSNTL 176
            N LY +A D FLRM GEGVTPDAQ+FIG+AKA+ +L DV+KAKEVS +A  LGVDSNTL
Sbjct: 236 SNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTL 295

Query: 177 V-----DMHSKCRSLQEA 190
           V     DM+SKC SLQEA
Sbjct: 296 VGTALIDMNSKCGSLQEA 313

[Close]
BLAST of Carg05954 vs. TrEMBL
Match: tr|A0A2H5Q6N1|A0A2H5Q6N1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_200780 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.1e-34
Identity = 80/138 (57.97%), Postives = 103/138 (74.64%), Query Frame = 0 

Query: 57  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISVFT 116
           +G+   +QI+I+GFAS + V T+LLNMYA+L  ++DS+K+FNTMTE N VSWNAMIS FT
Sbjct: 186 LGKMVHAQIIIKGFASHTVVTTSLLNMYAKLGRVEDSYKMFNTMTEHNEVSWNAMISGFT 245

Query: 117 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMDVLGDVSKAKEVSHFASLLGVDSN-- 176
            NGL+SEA DHFL MK EGVTP+  + IG++KA+  L DV K KE+  FAS LG+DSN  
Sbjct: 246 SNGLHSEAFDHFLLMKSEGVTPNMLTIIGVSKAIGQLRDVDKGKELQSFASKLGMDSNVE 305

Query: 177 ---TLVDMHSKCRSLQEA 190
                +DM+SKC SL +A
Sbjct: 306 VETAFIDMYSKCGSLCDA 323

[Close]
BLAST of Carg05954 vs. TrEMBL
Match: tr|V4SCU5|V4SCU5_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10004388mg PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 6.0e-34
Identity = 80/138 (57.97%), Postives = 102/138 (73.91%), Query Frame = 0 

Query: 57  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISVFT 116
           +G+   +QI+I+GFAS + V T+LLNMYA+L  ++DS K+FNTMTE N VSWNAMIS FT
Sbjct: 186 LGKMVHAQIIIKGFASHTVVTTSLLNMYAKLGRVEDSHKMFNTMTEHNEVSWNAMISGFT 245

Query: 117 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMDVLGDVSKAKEVSHFASLLGVDSN-- 176
            NGL+SEA DHFL MK EGVTP+  + IG++KA+  L DV K KE+  FAS LG+DSN  
Sbjct: 246 SNGLHSEAFDHFLLMKSEGVTPNMLTIIGVSKAIGQLRDVDKGKELQSFASKLGMDSNVE 305

Query: 177 ---TLVDMHSKCRSLQEA 190
                +DM+SKC SL +A
Sbjct: 306 VETAFIDMYSKCGSLCDA 323

[Close]
BLAST of Carg05954 vs. TrEMBL
Match: tr|A0A1Q3CHE5|A0A1Q3CHE5_CEPFO (PPR domain-containing protein/PPR_2 domain-containing protein/PPR_3 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_22956 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.3e-32
Identity = 79/138 (57.25%), Postives = 99/138 (71.74%), Query Frame = 0 

Query: 57  IGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISVFT 116
           IG    +QIVIRGFA   FV T+LLNMYA+L  I+DSFKVFN + + N+VSWNAMIS FT
Sbjct: 238 IGTIVHAQIVIRGFACHEFVSTSLLNMYAKLGRIEDSFKVFNGLNDHNLVSWNAMISGFT 297

Query: 117 LNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMDVLGDVSKAKEVSHFASLLGVDSNTL 176
           LNGL+ EA DHFLRMK EGV+P+  + + ++KA+  + DV + K V  FAS LG+ SN L
Sbjct: 298 LNGLHLEAFDHFLRMKDEGVSPNMYTLVSVSKAVGKMVDVDRGKVVHRFASDLGLRSNVL 357

Query: 177 V-----DMHSKCRSLQEA 190
           V     DM+SKC SL +A
Sbjct: 358 VGTALIDMYSKCGSLDDA 375

The following BLAST results are available for this feature:
BLAST of Carg05954 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022993736.16.1e-4673.19pentatricopeptide repeat-containing protein At2g27610-like [Cucurbita maxima][more]
XP_023549692.17.9e-4673.19pentatricopeptide repeat-containing protein At3g16610-like [Cucurbita pepo subsp... [more]
XP_022939229.13.9e-4571.74pentatricopeptide repeat-containing protein At3g16610-like [Cucurbita moschata][more]
XP_022134356.11.1e-4471.74pentatricopeptide repeat-containing protein At2g33680-like [Momordica charantia][more]
XP_016901974.12.8e-4371.74PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Cucumis m... [more]
BLAST of Carg05954 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G21065.12.1e-1629.45Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G11290.12.0e-1435.71Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G33760.12.0e-1429.71Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G34400.12.6e-1430.26Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT3G61170.17.5e-1435.00Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Carg05954 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|A8MQA3|PP330_ARATH3.8e-1529.45Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX... [more]
sp|P93011|PP182_ARATH3.5e-1329.71Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX... [more]
sp|Q3E6Q1|PPR32_ARATH3.5e-1335.71Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop... [more]
sp|O64705|PP184_ARATH4.6e-1330.26Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana OX... [more]
sp|Q9LUJ2|PP249_ARATH5.1e-1234.35Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX... [more]
BLAST of Carg05954 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E171|A0A1S4E171_CUCME1.9e-4371.74pentatricopeptide repeat-containing protein At2g27610-like OS=Cucumis melo OX=36... [more]
tr|A0A0A0KBQ4|A0A0A0KBQ4_CUCSA4.6e-4270.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G013890 PE=4 SV=1[more]
tr|A0A2H5Q6N1|A0A2H5Q6N1_CITUN2.1e-3457.97Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_200780 PE=4 SV=1[more]
tr|V4SCU5|V4SCU5_9ROSI6.0e-3457.97Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10004388mg PE=4 ... [more]
tr|A0A1Q3CHE5|A0A1Q3CHE5_CEPFO4.3e-3257.25PPR domain-containing protein/PPR_2 domain-containing protein/PPR_3 domain-conta... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05954-RACarg05954-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 76..105
e-value: 7.6E-4
score: 17.5
coord: 106..140
e-value: 1.7E-5
score: 22.7
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 104..144
e-value: 1.5E-8
score: 34.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 73..103
score: 7.18
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 104..138
score: 10.852
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 62..190
e-value: 2.7E-17
score: 65.3
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 70..189
NoneNo IPR availablePANTHERPTHR24015:SF661SUBFAMILY NOT NAMEDcoord: 70..189

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg05954CmaCh04G028800Cucurbita maxima (Rimu)carcmaB0033
Carg05954CmoCh04G030070Cucurbita moschata (Rifu)carcmoB0033
Carg05954Cp4.1LG01g21810Cucurbita pepo (Zucchini)carcpeB0034
Carg05954CsaV3_6G002120Cucumber (Chinese Long) v3carcucB0024
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg05954Silver-seed gourdcarcarB020
Carg05954Silver-seed gourdcarcarB024
Carg05954Silver-seed gourdcarcarB025
Carg05954Cucumber (Gy14) v2carcgybB0019
Carg05954Cucumber (Gy14) v2carcgybB0023
Carg05954Cucumber (Gy14) v1carcgyB0018
Carg05954Cucumber (Gy14) v1carcgyB0026
Carg05954Cucurbita maxima (Rimu)carcmaB0030
Carg05954Cucurbita maxima (Rimu)carcmaB0032
Carg05954Cucurbita moschata (Rifu)carcmoB0031
Carg05954Cucurbita moschata (Rifu)carcmoB0032
Carg05954Cucurbita pepo (Zucchini)carcpeB0030
Carg05954Cucurbita pepo (Zucchini)carcpeB0031
Carg05954Wild cucumber (PI 183967)carcpiB0020
Carg05954Wild cucumber (PI 183967)carcpiB0024
Carg05954Cucumber (Chinese Long) v2carcuB0020
Carg05954Cucumber (Chinese Long) v2carcuB0023
Carg05954Cucumber (Chinese Long) v3carcucB0020
Carg05954Bottle gourd (USVL1VR-Ls)carlsiB015
Carg05954Bottle gourd (USVL1VR-Ls)carlsiB017
Carg05954Melon (DHL92) v3.5.1carmeB0021
Carg05954Melon (DHL92) v3.5.1carmeB0025
Carg05954Melon (DHL92) v3.6.1carmedB0022
Carg05954Melon (DHL92) v3.6.1carmedB0026
Carg05954Watermelon (Charleston Gray)carwcgB0019
Carg05954Watermelon (Charleston Gray)carwcgB0026
Carg05954Watermelon (97103) v1carwmB0019
Carg05954Watermelon (97103) v1carwmB0024
Carg05954Watermelon (97103) v2carwmbB0015
Carg05954Watermelon (97103) v2carwmbB0021
Carg05954Wax gourdcarwgoB0025
Carg05954Wax gourdcarwgoB0022