Cp4.1LG01g21810 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g21810
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein family
LocationCp4.1LG01 : 20528176 .. 20532297 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTATCCAACTTTGCCGTTGCTGAACCTGCTCTTTCCTTCTCGAACGCGCCAATGTCCAGGCTAATCTCTCATTCCCCAAGCAATGTCTTCTTCTTCTTCTCCCAGAATTCGGATTTATTTTCGTAATGGCTACAAATTTTTGACAGATTAGGAATTTAGCGTTAACACCAACGCCTCCTGCGTGATTGTGTGGACGTAAGATTTCTGAAACAAGGCAAGACTGTTCATGCGTTTTTGTTAAAATCGAAATTTTAAAACCACGATTCTCTGGTTTTGCTTAATCATGTTGCTCACTCTCGCTCGAAATGCTCCGATATTGGTGCTGCATGCCACCTGTTTGATCAAATGTCCCAGAGAGACATCTTTTCTTGGATTGGCTAACAATGATTTTTTCCTCGATTGGTTTTGAGTAATTCTGTGAAATGCAGAGTCAGGGAGTTTTTCCAGATCAGTCTGCATATTCTTGTATCTTGGTTTGGAGACCATTATATTGGGCAAAATGGTTCATCCCAGATTATTATTAGAGGCTTTGCATCTCTTTCTTTTGTGTATACTGCTCTTCTTAATATGTATGCAAGGTTACAAGAGATTCAGGATTCATTCAAGGTGTTTAACACCATGACTGAAGTTAATGTAGTCTCGTGGAATGCCATGATCTCGGGGTTCACATTAAATGGTCTTTACTCAGAGGCATATGATCATTTTCTCAGAATGAAGGGAGAAGGAGTAACACCCGATGCACAATCGTTTATTGGCATTGCAAAAGCTATGGGTATGTTAGGAGCCGTGAGCAAGGCAAAAGAAGTTAGCCATTTTGCTTCAGAGTTAGGTGTGGACTCCAATACTCTTGTTGATATGCATTCTAAATGTAGATCTTTGCAAGAGGCAGATCCATCTTTGACCCTCATTTTACAAATTGTCGGGTTAACGTCCCGCGGAATGCAATGATTTTGGGTATTTATAGAGAGTGAGTGTAATGAAAAAACCTTGGAATTATTTGCCAAAATGTGTCAAAATGACATACACTCGGACCATTACACTTATTGTAGTGTATTTAATGCCATAGCTGAGTCGGGAAAGAAGGTTCATGCCCAGGCTATAAAATCAGGATTGGAAGTGAATCATATAAGTACCTGAAATGCAGTGGCTAATGCGTATGCTAAACGTGGATCGCTGGATGATGTAAGGAAGGTTTTTTTTCAGGGTGGAAGAAAGAGATTTAGTACCTTGGACCACCCTGGTGACTGCTTATTCTCAGTGTTCTGAATGGGACAAAGCAATAGAAATCTTCTCAAATATGAGAAGAGAAGGCTTTACACCCAATCAATTCTCATTTTCTAGCATGCTTGTTTCATGTGCCAGCCTTTGCTTACTCGAGTACGTCCACAAGAAGTCCATGGTATCCCCTGCAAGGTTGGCTTGGATATGAACAAAATGCATAGAAAGTGCTCTGATTGACATGTATGCCAAATGCGGCAGTCTGGCCGAGGCGAAAGAAGGTTTTCGATAGAATCTCTAACGCCGATACAGTTTCGTGGACTGCTATAATATTAGGTCGTGCTCAACACGATATTGTGGAAGGCACTCTTTGATTCTTTAGAAGGATGGAGCAGTTAGGTATGGAGCCCAATGCTGTTACTTTTTTGTGTGTTCTATTTGTATGTAGCCATGGAAGTCTGGTAGAGGAAGGCCTACAGTACTTCACGCTAATGAAGGAAACTTATGGTGGTACCAGAGATGGAGCATTATTCCTGTGTTGTTGATCTCTTAAGTCGCGTGGGACATCTAAACTATGCAATGGAGTTTGTAAGCACGATGCCCATAGAGCCCAATGAAATGGTTTGGCAGACCTTGTTGGGAACATGTAGGGTTCATGGTAATGCTGAATTGGGAGAACTTGCTTCTCAGGAGATGCTTTATTCTAGAGCAAAAAACTCAGCTACCTATGTTCTTTTATCCAACACCTACATCTAGTTGGGGAGTTTCAAAGATGACTTAGTGTAACAGCCCAAGCCCACCGCTAACAGAAATTGTCCTCTTTAGACTTTCCCTCAAAGTTTTTAAAAGACATCTGCTAGGGAGAGGTTTCCACACCCTTATAAACAATGTTTCTTTTATTCCACACTCTTATAAGCTAAGTTTTATGCAGGTGGCCAACAGCATCCAGAAAAAGATAAATTTATGCTAAGCTAGAAGAGTTTAGGTTGAAGGCCAATTCTTTGGAGGATGTACTAGATTTGAGTTATGGCTGTAAGATGTGGACCTCAGATAAGTTATACGGATACAGATGGTATCCCCCGTCCACTCGACCAAATTCATAGGGGGAAAAAAAAGCTTCAGCCAAAGAGATCAAATTAAACAGTGAAGGCAAAAGGGTGCTTAAGAACTAAATTTGGTGGCTAAATGATTAGGACTTACAGATATGATTCTCTGCATCATTCAACTCTTGCAGGTTCTGAAATATGTATGATGCTGTACTTCATTAGATAAGGAAGAATAACGATTCGGGTTATGGAAATGATAAAAAGCGCCACGGATCAATGCTCGGTTCTATGAAAATCTTTTACTTTTTGACAATATGATTGCTATGTTGGGTGAAGGTTATCAGAAGTTTGACCTCTTTCATAATAATGCATCGTTATGATGTGCTAATTTGGAATCATAAAGCCTTTCTGCTTATGATTTTACTGGGGTCTACTGAACTTTGTCATACTCGAAGCAGTAAAATTTATCGTTACGTTACATGAATAAGTTTGGTAAGATATTTCTCAAAATCATCAGCAGTGGAAATGAAGGCATTTCTCTTTTCTCTCTCCTTCTGATTTACTTTTGTTTTAACTCTCTAAATTTGTCTTTTATTTTCCCTTGGAAACATGGCCTAGTTGTTTTATTTCCTGAATTCTATTTATCATGCCAAGAAACTATTTACTGTTTCTCCCGTGAATTAGCTGAAATGAGTAATACTGTTTTAACTTATTGTTATTATTGTTACATTTTCCTTTTTACCATAAGAGGAATTTGATTGTTCTTGAATTATTGGTTTCAGCTGCAGTGAAGTGATAACTGAAATAAAACATTTTGGCATGATCTCTCATAACTCGTTACTATGCTTCTTCTTCCCCTCCAATAACCTCACTAGGCTTTGTAGGTGTCATAAGACTGGTCTATGTCACCCAGACCCCCCAGGCATATCAGTAAAACAAAACTACTGTTCAAAAACAGTATCGTCTTAGATAATGCATTTAGTGAGTCAATCCTTGTCTTTAGAAGCATCACAATTGAAACTTAAGCGATTCTACGCGAGATCCCACATCGGTTGGAGAGGAGAACAAAACATTCTTTATAAGGGTGTGGAAGCCTCTCCCTAGCAAACACGTTTTAAAAACCTTGAGGGAAAGCTCCAAAGGGAAAGTCTAAAGAGGACAATATTTGCTAGCGGTGGGCTTTGACTGTTACATTCTACCTGGCTTATATTTACTATTGACATATCATCTATGGTTCCATGATTCTGGGTCAAGGTTCGAGATTTAATGACCTGAAACTCTTGTTGTCTACCAGAGCTGACTTTGGAGCAAATGGAGAAGAATTTTTCTGAAGATTAATGCAAGAGGTGGAGTTTTGGACGCCTCGAGGTCGGAATTGAAGAGAGGAAGAGGAAATAGGGCTCCTTGTTTATGGGGTTGAAGAAGAAAAAAGGGGGAAAGTGAGTTGCATGGGGGAGGGGGAAAATTGTGTGCCATTCAGGGACTATCCAAAAACCAATAACGAGACACAACAGTTGAAAGGCTGTTTTATGAAATGTCTTGTGGGTATGGCCCTCGCAGTGTTTGCTTGCTTGCTTGTAGTGCCATTATCTGTGGTCCTTTTGCTGGATTTATATGCCTACTTCCTTAACATGTGAAGAAGATGGGACAACCGACTTCCAGTGCGCGCACATATATATACATATACATACATATATGTATCCATCTCCAAGCCTTGAAACCGCCCCCGTGACCTGAAATGTTCAAATCTTTCTGTCAACATCAGTGGGGCATCAACAATATGGTACGTCTCTAAACTCAATGCTATACATTTTTCATTTTGTTGCTGCTTATACAGATTTATTCACCTTAA

mRNA sequence

ATGAACCATTATATTGGGCAAAATGGTTCATCCCAGATTATTATTAGAGGCTTTGCATCTCTTTCTTTTGTGTATACTGCTCTTCTTAATATGTATGCAAGGTTACAAGAGATTCAGGATTCATTCAAGGTGTTTAACACCATGACTGAAGTTAATGTAGTCTCGTGGAATGCCATGATCTCGGGGTTCACATTAAATGGTCTTTACTCAGAGGCATATGATCATTTTCTCAGAATGAAGGGAGAAGGAGTAACACCCGATGCACAATCGTTTATTGGCATTGCAAAAGCTATGGGTATGTTAGGAGCCGTGAGCAAGGCAAAAGAAGTTAGCCATTTTGCTTCAGAGTTAGGTGTGGACTCCAATACTCTTGTTGATATGCATTCTAAATGTAGATCTTTGCAAGAGGCAGATCCATCTTTGACCCTCATTTTACAAATTGTCGGGGTGGAAGAAAGAGATTTAGTACCTTGGACCACCCTGATTTATTCACCTTAA

Coding sequence (CDS)

ATGAACCATTATATTGGGCAAAATGGTTCATCCCAGATTATTATTAGAGGCTTTGCATCTCTTTCTTTTGTGTATACTGCTCTTCTTAATATGTATGCAAGGTTACAAGAGATTCAGGATTCATTCAAGGTGTTTAACACCATGACTGAAGTTAATGTAGTCTCGTGGAATGCCATGATCTCGGGGTTCACATTAAATGGTCTTTACTCAGAGGCATATGATCATTTTCTCAGAATGAAGGGAGAAGGAGTAACACCCGATGCACAATCGTTTATTGGCATTGCAAAAGCTATGGGTATGTTAGGAGCCGTGAGCAAGGCAAAAGAAGTTAGCCATTTTGCTTCAGAGTTAGGTGTGGACTCCAATACTCTTGTTGATATGCATTCTAAATGTAGATCTTTGCAAGAGGCAGATCCATCTTTGACCCTCATTTTACAAATTGTCGGGGTGGAAGAAAGAGATTTAGTACCTTGGACCACCCTGATTTATTCACCTTAA

Protein sequence

MNHYIGQNGSSQIIIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEVNVVSWNAMISGFTLNGLYSEAYDHFLRMKGEGVTPDAQSFIGIAKAMGMLGAVSKAKEVSHFASELGVDSNTLVDMHSKCRSLQEADPSLTLILQIVGVEERDLVPWTTLIYSP
BLAST of Cp4.1LG01g21810 vs. Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 1.7e-18
Identity = 52/163 (31.90%), Postives = 96/163 (58.90%), Query Frame = 1

Query: 5   IGQNGSSQIIIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEVNVVSWNAMISGFT 64
           +G+   S +I  GF SL +V  +LL++YA   ++  ++KVF+ M E ++V+WN++I+GF 
Sbjct: 139 LGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFA 198

Query: 65  LNGLYSEAYDHFLRMKGEGVTPDAQSFIGIAKAMGMLGAVSKAKEVSHFASELGV----- 124
            NG   EA   +  M  +G+ PD  + + +  A   +GA++  K V  +  ++G+     
Sbjct: 199 ENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLH 258

Query: 125 DSNTLVDMHSKCRSLQEADPSLTLILQIVGVEERDLVPWTTLI 163
            SN L+D++++C  ++EA    TL  ++V   +++ V WT+LI
Sbjct: 259 SSNVLLDLYARCGRVEEAK---TLFDEMV---DKNSVSWTSLI 295

BLAST of Cp4.1LG01g21810 vs. Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.5e-16
Identity = 50/163 (30.67%), Postives = 87/163 (53.37%), Query Frame = 1

Query: 5   IGQNGSSQIIIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEVNVVSWNAMISGFT 64
           +G+     ++  GF+   F  T L NMYA+ +++ ++ KVF+ M E ++VSWN +++G++
Sbjct: 153 VGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYS 212

Query: 65  LNGLYSEAYDHFLRMKGEGVTPDAQSFIGIAKAMGMLGAVSKAKEVSHFASELGVD---- 124
            NG+   A +    M  E + P   + + +  A+  L  +S  KE+  +A   G D    
Sbjct: 213 QNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVN 272

Query: 125 -SNTLVDMHSKCRSLQEADPSLTLILQIVGVEERDLVPWTTLI 163
            S  LVDM++KC SL+ A           G+ ER++V W ++I
Sbjct: 273 ISTALVDMYAKCGSLETARQLFD------GMLERNVVSWNSMI 309

BLAST of Cp4.1LG01g21810 vs. Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.8e-16
Identity = 46/163 (28.22%), Postives = 86/163 (52.76%), Query Frame = 1

Query: 5   IGQNGSSQIIIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEVNVVSWNAMISGFT 64
           IG+      ++ GF   ++V  AL+  Y++  +++ + +VF+ M E ++V+WN+++SGF 
Sbjct: 125 IGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFE 184

Query: 65  LNGLYSEAYDHFLRMKGEGVTPDAQSFIGIAKAMGMLGAVSKAKEVSHFASELGVDSN-- 124
            NGL  EA   F +M+  G  PD+ +F+ +  A    GAVS    V  +    G+D N  
Sbjct: 185 QNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVK 244

Query: 125 ---TLVDMHSKCRSLQEADPSLTLILQIVGVEERDLVPWTTLI 163
               L++++S+C  + +A            ++E ++  WT +I
Sbjct: 245 LGTALINLYSRCGDVGKAREVFD------KMKETNVAAWTAMI 281

BLAST of Cp4.1LG01g21810 vs. Swiss-Prot
Match: PP232_ARATH (Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-15
Identity = 48/140 (34.29%), Postives = 79/140 (56.43%), Query Frame = 1

Query: 28  LLNMYARLQEIQDSFKVFNTMTEVNVVSWNAMISGFTLNGLYSEAYDHFLRMKGEGVTPD 87
           L++MY + +E   ++KVF++M E NVVSW+A++SG  LNG    +   F  M  +G+ P+
Sbjct: 47  LIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPN 106

Query: 88  AQSFIGIAKAMGMLGAVSKAKEVSHFASELGVD-----SNTLVDMHSKCRSLQEADPSLT 147
             +F    KA G+L A+ K  ++  F  ++G +      N+LVDM+SKC  + EA+    
Sbjct: 107 EFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFR 166

Query: 148 LILQIVGVEERDLVPWTTLI 163
            I+      +R L+ W  +I
Sbjct: 167 RIV------DRSLISWNAMI 180

BLAST of Cp4.1LG01g21810 vs. Swiss-Prot
Match: PP165_ARATH (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.0e-15
Identity = 48/144 (33.33%), Postives = 81/144 (56.25%), Query Frame = 1

Query: 25  YTALLNMYARLQEIQDSFKVFNTMTEVNVVSWNAMISGFTLNGLYSEAYDHFLRMKGEGV 84
           + +LL+ YARL +++ +  +F+ M +  +VSW AMISG+T  G Y EA D F  M+  G+
Sbjct: 178 WNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGI 237

Query: 85  TPDAQSFIGIAKAMGMLGAVSKAKEVSHFASELGV-----DSNTLVDMHSKCRSLQEADP 144
            PD  S I +  +   LG++   K +  +A   G        N L++M+SKC  + +A  
Sbjct: 238 EPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQA-- 297

Query: 145 SLTLILQIVG-VEERDLVPWTTLI 163
                +Q+ G +E +D++ W+T+I
Sbjct: 298 -----IQLFGQMEGKDVISWSTMI 314

BLAST of Cp4.1LG01g21810 vs. TrEMBL
Match: A0A0A0KBQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013890 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.9e-45
Identity = 100/138 (72.46%), Postives = 116/138 (84.06%), Query Frame = 1

Query: 5   IGQNGSSQIIIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEVNVVSWNAMISGFT 64
           +G    +QI+IRGF S +FV TALLNMYA+LQEI+DS+KVFNTMTEVNVVSWNAMI+GFT
Sbjct: 176 LGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFT 235

Query: 65  LNGLYSEAYDHFLRMKGEGVTPDAQSFIGIAKAMGMLGAVSKAKEVSHFASELGVDSNTL 124
            N LY +A+D FLRM GEGVTPDAQ+FIG+AKA+GML  V+KAKEVS +A ELGVDSNTL
Sbjct: 236 SNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTL 295

Query: 125 V-----DMHSKCRSLQEA 138
           V     DM+SKC SLQEA
Sbjct: 296 VGTALIDMNSKCGSLQEA 313

BLAST of Cp4.1LG01g21810 vs. TrEMBL
Match: V4SCU5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004388mg PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.7e-36
Identity = 87/163 (53.37%), Postives = 113/163 (69.33%), Query Frame = 1

Query: 5   IGQNGSSQIIIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEVNVVSWNAMISGFT 64
           +G+   +QIII+GFAS + V T+LLNMYA+L  ++DS K+FNTMTE N VSWNAMISGFT
Sbjct: 186 LGKMVHAQIIIKGFASHTVVTTSLLNMYAKLGRVEDSHKMFNTMTEHNEVSWNAMISGFT 245

Query: 65  LNGLYSEAYDHFLRMKGEGVTPDAQSFIGIAKAMGMLGAVSKAKEVSHFASELGVDSN-- 124
            NGL+SEA+DHFL MK EGVTP+  + IG++KA+G L  V K KE+  FAS+LG+DSN  
Sbjct: 246 SNGLHSEAFDHFLLMKSEGVTPNMLTIIGVSKAIGQLRDVDKGKELQSFASKLGMDSNVE 305

Query: 125 ---TLVDMHSKCRSLQEADPSLTLILQIVGVEERDLVPWTTLI 163
                +DM+SKC SL +A      IL    +   + V W  +I
Sbjct: 306 VETAFIDMYSKCGSLCDARAVFDSIL----INSGENVLWNAMI 344

BLAST of Cp4.1LG01g21810 vs. TrEMBL
Match: M5XS64_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa014747mg PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.4e-34
Identity = 82/163 (50.31%), Postives = 112/163 (68.71%), Query Frame = 1

Query: 5   IGQNGSSQIIIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEVNVVSWNAMISGFT 64
           +G+   +Q+ +RGFAS +FV T+LLNMYA+  +I+DS K+FNTMTE N VSWNAMISG T
Sbjct: 109 LGKMVHAQVFVRGFASDTFVSTSLLNMYAKFGKIEDSCKMFNTMTEHNKVSWNAMISGLT 168

Query: 65  LNGLYSEAYDHFLRMKGEGVTPDAQSFIGIAKAMGMLGAVSKAKEVSHFASELGVDSN-- 124
            NGL+ EA+D+FLRMK EG+TP+  + I ++KA G LG V+K+K V  +ASEL ++S+  
Sbjct: 169 SNGLHFEAFDYFLRMKKEGITPNMYTLISVSKAAGKLGDVNKSKVVHSYASELEMESSVQ 228

Query: 125 ---TLVDMHSKCRSLQEADPSLTLILQIVGVEERDLVPWTTLI 163
               L+DM+SKC+SL +A     L     GV      PW  +I
Sbjct: 229 VGTALIDMYSKCKSLSDARSVFDLNFTSCGVNP----PWNAMI 267

BLAST of Cp4.1LG01g21810 vs. TrEMBL
Match: A0A068V210_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042072001 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.0e-31
Identity = 76/163 (46.63%), Postives = 105/163 (64.42%), Query Frame = 1

Query: 5   IGQNGSSQIIIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEVNVVSWNAMISGFT 64
           +G+   ++I+I GFAS  FV T+LLNMYA+L ++++S KVF++M E N VSWNAMISGFT
Sbjct: 193 LGEMVHARILITGFASHVFVSTSLLNMYAKLGDVEESLKVFDSMNEHNEVSWNAMISGFT 252

Query: 65  LNGLYSEAYDHFLRMKGEGVTPDAQSFIGIAKAMGMLGAVSKAKEVSHFASELGVDSN-- 124
            NGLY EA++HFL M      PD  S I + KA+GMLG   K K+V ++AS LG+DSN  
Sbjct: 253 ANGLYLEAFNHFLMMMEHRYAPDMYSIISVLKAVGMLGDAGKGKQVHNYASNLGLDSNVR 312

Query: 125 ---TLVDMHSKCRSLQEADPSLTLILQIVGVEERDLVPWTTLI 163
               L+DM++KC +L +A           G+     +PW  +I
Sbjct: 313 VGTALIDMYAKCGALSDAQSVFYSNFSNCGLN----MPWNAMI 351

BLAST of Cp4.1LG01g21810 vs. TrEMBL
Match: A0A151S656_CAJCA (Pentatricopeptide repeat-containing protein At2g13600 family OS=Cajanus cajan GN=KK1_027967 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.0e-30
Identity = 79/193 (40.93%), Postives = 115/193 (59.59%), Query Frame = 1

Query: 5   IGQNGSSQIIIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEVNVVSWNAMISGFT 64
           +G+   + +++ GF   + V T+LLNMYA+L E + S KVFNTM E+N+VSWNAMISGFT
Sbjct: 178 LGEMVHAHVVVTGFLMHTVVGTSLLNMYAKLGESESSVKVFNTMPELNIVSWNAMISGFT 237

Query: 65  LNGLYSEAYDHFLRMKGEGVTPDAQSFIGIAKAMGMLGAVSKAKEVSHFASELGVDSNTL 124
            NGL+ +A+D F+ M   GVTP+  +F+ ++KA+G LG + K  +V  +AS LG+DSNTL
Sbjct: 238 SNGLHLQAFDCFMNMIEVGVTPNNFTFVSVSKAVGQLGDIHKCHQVHSYASNLGLDSNTL 297

Query: 125 V-----DMHSKCRSLQEAD------------------------------PSLTLILQIVG 163
           V     DM+SKC S+ +A                                +L L  +I  
Sbjct: 298 VGTALIDMYSKCGSMSDAQVLFESKFSGCLVNTPWNAMITGYSQAGSHVEALQLFTRI-- 357

BLAST of Cp4.1LG01g21810 vs. TAIR10
Match: AT4G21065.1 (AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 94.0 bits (232), Expect = 9.4e-20
Identity = 52/163 (31.90%), Postives = 96/163 (58.90%), Query Frame = 1

Query: 5   IGQNGSSQIIIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEVNVVSWNAMISGFT 64
           +G+   S +I  GF SL +V  +LL++YA   ++  ++KVF+ M E ++V+WN++I+GF 
Sbjct: 139 LGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFA 198

Query: 65  LNGLYSEAYDHFLRMKGEGVTPDAQSFIGIAKAMGMLGAVSKAKEVSHFASELGV----- 124
            NG   EA   +  M  +G+ PD  + + +  A   +GA++  K V  +  ++G+     
Sbjct: 199 ENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLH 258

Query: 125 DSNTLVDMHSKCRSLQEADPSLTLILQIVGVEERDLVPWTTLI 163
            SN L+D++++C  ++EA    TL  ++V   +++ V WT+LI
Sbjct: 259 SSNVLLDLYARCGRVEEAK---TLFDEMV---DKNSVSWTSLI 295

BLAST of Cp4.1LG01g21810 vs. TAIR10
Match: AT3G61170.1 (AT3G61170.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 88.2 bits (217), Expect = 5.2e-18
Identity = 57/164 (34.76%), Postives = 86/164 (52.44%), Query Frame = 1

Query: 5   IGQNGSSQIIIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEVNVVSWNAMISGFT 64
           I  +    I+  G+A+   V  AL++MYA+   +  + KVF  M E +V+SW A+++G T
Sbjct: 347 IASSAHCLIVKTGYATYKLVNNALVDMYAKRGIMDSALKVFEGMIEKDVISWTALVTGNT 406

Query: 65  LNGLYSEAYDHFLRMKGEGVTPDAQSFIGIAKAMGMLGAVSKAKEV------SHFASELG 124
            NG Y EA   F  M+  G+TPD      +  A   L  +   ++V      S F S L 
Sbjct: 407 HNGSYDEALKLFCNMRVGGITPDKIVTASVLSASAELTLLEFGQQVHGNYIKSGFPSSLS 466

Query: 125 VDSNTLVDMHSKCRSLQEADPSLTLILQIVGVEERDLVPWTTLI 163
           V +N+LV M++KC SL++A+           +E RDL+ WT LI
Sbjct: 467 V-NNSLVTMYTKCGSLEDANVIFN------SMEIRDLITWTCLI 503

BLAST of Cp4.1LG01g21810 vs. TAIR10
Match: AT1G11290.1 (AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-17
Identity = 50/163 (30.67%), Postives = 87/163 (53.37%), Query Frame = 1

Query: 5   IGQNGSSQIIIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEVNVVSWNAMISGFT 64
           +G+     ++  GF+   F  T L NMYA+ +++ ++ KVF+ M E ++VSWN +++G++
Sbjct: 153 VGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYS 212

Query: 65  LNGLYSEAYDHFLRMKGEGVTPDAQSFIGIAKAMGMLGAVSKAKEVSHFASELGVD---- 124
            NG+   A +    M  E + P   + + +  A+  L  +S  KE+  +A   G D    
Sbjct: 213 QNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVN 272

Query: 125 -SNTLVDMHSKCRSLQEADPSLTLILQIVGVEERDLVPWTTLI 163
            S  LVDM++KC SL+ A           G+ ER++V W ++I
Sbjct: 273 ISTALVDMYAKCGSLETARQLFD------GMLERNVVSWNSMI 309

BLAST of Cp4.1LG01g21810 vs. TAIR10
Match: AT2G33760.1 (AT2G33760.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 85.1 bits (209), Expect = 4.4e-17
Identity = 46/163 (28.22%), Postives = 86/163 (52.76%), Query Frame = 1

Query: 5   IGQNGSSQIIIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEVNVVSWNAMISGFT 64
           IG+      ++ GF   ++V  AL+  Y++  +++ + +VF+ M E ++V+WN+++SGF 
Sbjct: 125 IGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFE 184

Query: 65  LNGLYSEAYDHFLRMKGEGVTPDAQSFIGIAKAMGMLGAVSKAKEVSHFASELGVDSN-- 124
            NGL  EA   F +M+  G  PD+ +F+ +  A    GAVS    V  +    G+D N  
Sbjct: 185 QNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVK 244

Query: 125 ---TLVDMHSKCRSLQEADPSLTLILQIVGVEERDLVPWTTLI 163
               L++++S+C  + +A            ++E ++  WT +I
Sbjct: 245 LGTALINLYSRCGDVGKAREVFD------KMKETNVAAWTAMI 281

BLAST of Cp4.1LG01g21810 vs. TAIR10
Match: AT3G15130.1 (AT3G15130.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 84.0 bits (206), Expect = 9.7e-17
Identity = 48/140 (34.29%), Postives = 79/140 (56.43%), Query Frame = 1

Query: 28  LLNMYARLQEIQDSFKVFNTMTEVNVVSWNAMISGFTLNGLYSEAYDHFLRMKGEGVTPD 87
           L++MY + +E   ++KVF++M E NVVSW+A++SG  LNG    +   F  M  +G+ P+
Sbjct: 47  LIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPN 106

Query: 88  AQSFIGIAKAMGMLGAVSKAKEVSHFASELGVD-----SNTLVDMHSKCRSLQEADPSLT 147
             +F    KA G+L A+ K  ++  F  ++G +      N+LVDM+SKC  + EA+    
Sbjct: 107 EFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFR 166

Query: 148 LILQIVGVEERDLVPWTTLI 163
            I+      +R L+ W  +I
Sbjct: 167 RIV------DRSLISWNAMI 180

BLAST of Cp4.1LG01g21810 vs. NCBI nr
Match: gi|659113785|ref|XP_008456754.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Cucumis melo])

HSP 1 Score: 194.9 bits (494), Expect = 1.1e-46
Identity = 102/138 (73.91%), Postives = 117/138 (84.78%), Query Frame = 1

Query: 5   IGQNGSSQIIIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEVNVVSWNAMISGFT 64
           +G+   +QI+IRGF S +FV TALLNMYA+LQEI+DS KVFNTMTEVNVVSWNAMI+GFT
Sbjct: 186 LGKMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSCKVFNTMTEVNVVSWNAMITGFT 245

Query: 65  LNGLYSEAYDHFLRMKGEGVTPDAQSFIGIAKAMGMLGAVSKAKEVSHFASELGVDSNTL 124
            NG Y +A+D FLRMKGEGVTPDAQ+FIG+AKA+GML  V+KAKEVS +A ELGVDSNTL
Sbjct: 246 SNGFYLDAFDLFLRMKGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTL 305

Query: 125 V-----DMHSKCRSLQEA 138
           V     DMHSKC SLQEA
Sbjct: 306 VGTALIDMHSKCGSLQEA 323

BLAST of Cp4.1LG01g21810 vs. NCBI nr
Match: gi|778709607|ref|XP_011656423.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g25970 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 2.7e-45
Identity = 100/138 (72.46%), Postives = 116/138 (84.06%), Query Frame = 1

Query: 5   IGQNGSSQIIIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEVNVVSWNAMISGFT 64
           +G    +QI+IRGF S +FV TALLNMYA+LQEI+DS+KVFNTMTEVNVVSWNAMI+GFT
Sbjct: 186 LGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFT 245

Query: 65  LNGLYSEAYDHFLRMKGEGVTPDAQSFIGIAKAMGMLGAVSKAKEVSHFASELGVDSNTL 124
            N LY +A+D FLRM GEGVTPDAQ+FIG+AKA+GML  V+KAKEVS +A ELGVDSNTL
Sbjct: 246 SNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTL 305

Query: 125 V-----DMHSKCRSLQEA 138
           V     DM+SKC SLQEA
Sbjct: 306 VGTALIDMNSKCGSLQEA 323

BLAST of Cp4.1LG01g21810 vs. NCBI nr
Match: gi|700190613|gb|KGN45817.1| (hypothetical protein Csa_6G013890 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 2.7e-45
Identity = 100/138 (72.46%), Postives = 116/138 (84.06%), Query Frame = 1

Query: 5   IGQNGSSQIIIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEVNVVSWNAMISGFT 64
           +G    +QI+IRGF S +FV TALLNMYA+LQEI+DS+KVFNTMTEVNVVSWNAMI+GFT
Sbjct: 176 LGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFT 235

Query: 65  LNGLYSEAYDHFLRMKGEGVTPDAQSFIGIAKAMGMLGAVSKAKEVSHFASELGVDSNTL 124
            N LY +A+D FLRM GEGVTPDAQ+FIG+AKA+GML  V+KAKEVS +A ELGVDSNTL
Sbjct: 236 SNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTL 295

Query: 125 V-----DMHSKCRSLQEA 138
           V     DM+SKC SLQEA
Sbjct: 296 VGTALIDMNSKCGSLQEA 313

BLAST of Cp4.1LG01g21810 vs. NCBI nr
Match: gi|568874190|ref|XP_006490200.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g27110-like [Citrus sinensis])

HSP 1 Score: 162.2 bits (409), Expect = 8.0e-37
Identity = 89/163 (54.60%), Postives = 114/163 (69.94%), Query Frame = 1

Query: 5   IGQNGSSQIIIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEVNVVSWNAMISGFT 64
           +G+   +QIII+GFAS + V T+LLNMYA+L  ++DS+K+FNTMTE N VSWNAMISGFT
Sbjct: 186 LGKMVHAQIIIKGFASHTVVTTSLLNMYAKLGRVEDSYKMFNTMTEHNEVSWNAMISGFT 245

Query: 65  LNGLYSEAYDHFLRMKGEGVTPDAQSFIGIAKAMGMLGAVSKAKEVSHFASELGVDSN-- 124
            NGL+SEA+DHFL MK EGVTP+  + IG++KA+G L  V + KEV  FASELG++SN  
Sbjct: 246 SNGLHSEAFDHFLLMKSEGVTPNMLTIIGVSKAVGQLHDVDRGKEVQSFASELGLESNVQ 305

Query: 125 ---TLVDMHSKCRSLQEADPSLTLILQIVGVEERDLVPWTTLI 163
               L+DM+SKC SL +A      IL   G      V W  +I
Sbjct: 306 VGTALIDMYSKCGSLNDARAVFDSILINSGAN----VLWNAII 344

BLAST of Cp4.1LG01g21810 vs. NCBI nr
Match: gi|567857726|ref|XP_006421546.1| (hypothetical protein CICLE_v10004388mg [Citrus clementina])

HSP 1 Score: 159.1 bits (401), Expect = 6.8e-36
Identity = 87/163 (53.37%), Postives = 113/163 (69.33%), Query Frame = 1

Query: 5   IGQNGSSQIIIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEVNVVSWNAMISGFT 64
           +G+   +QIII+GFAS + V T+LLNMYA+L  ++DS K+FNTMTE N VSWNAMISGFT
Sbjct: 186 LGKMVHAQIIIKGFASHTVVTTSLLNMYAKLGRVEDSHKMFNTMTEHNEVSWNAMISGFT 245

Query: 65  LNGLYSEAYDHFLRMKGEGVTPDAQSFIGIAKAMGMLGAVSKAKEVSHFASELGVDSN-- 124
            NGL+SEA+DHFL MK EGVTP+  + IG++KA+G L  V K KE+  FAS+LG+DSN  
Sbjct: 246 SNGLHSEAFDHFLLMKSEGVTPNMLTIIGVSKAIGQLRDVDKGKELQSFASKLGMDSNVE 305

Query: 125 ---TLVDMHSKCRSLQEADPSLTLILQIVGVEERDLVPWTTLI 163
                +DM+SKC SL +A      IL    +   + V W  +I
Sbjct: 306 VETAFIDMYSKCGSLCDARAVFDSIL----INSGENVLWNAMI 344

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PP330_ARATH1.7e-1831.90Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN... [more]
PPR32_ARATH3.5e-1630.67Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop... [more]
PP182_ARATH7.8e-1628.22Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN... [more]
PP232_ARATH1.7e-1534.29Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis th... [more]
PP165_ARATH5.0e-1533.33Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN... [more]
Match NameE-valueIdentityDescription
A0A0A0KBQ4_CUCSA1.9e-4572.46Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013890 PE=4 SV=1[more]
V4SCU5_9ROSI4.7e-3653.37Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004388mg PE=4 SV=1[more]
M5XS64_PRUPE3.4e-3450.31Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa014747mg PE=4 S... [more]
A0A068V210_COFCA6.0e-3146.63Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042072001 PE=4 SV=1[more]
A0A151S656_CAJCA5.0e-3040.93Pentatricopeptide repeat-containing protein At2g13600 family OS=Cajanus cajan GN... [more]
Match NameE-valueIdentityDescription
AT4G21065.19.4e-2031.90 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G61170.15.2e-1834.76 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G11290.12.0e-1730.67 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G33760.14.4e-1728.22 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G15130.19.7e-1734.29 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|659113785|ref|XP_008456754.1|1.1e-4673.91PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Cucumis m... [more]
gi|778709607|ref|XP_011656423.1|2.7e-4572.46PREDICTED: putative pentatricopeptide repeat-containing protein At3g25970 [Cucum... [more]
gi|700190613|gb|KGN45817.1|2.7e-4572.46hypothetical protein Csa_6G013890 [Cucumis sativus][more]
gi|568874190|ref|XP_006490200.1|8.0e-3754.60PREDICTED: pentatricopeptide repeat-containing protein At5g27110-like [Citrus si... [more]
gi|567857726|ref|XP_006421546.1|6.8e-3653.37hypothetical protein CICLE_v10004388mg [Citrus clementina][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g21810.1Cp4.1LG01g21810.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 24..51
score: 0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 52..91
score: 1.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 24..52
score: 0.0011coord: 54..88
score: 4.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 21..51
score: 7.004coord: 52..86
score: 11.531coord: 87..121
score: 5
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 12..162
score: 7.5
NoneNo IPR availablePANTHERPTHR24015:SF661SUBFAMILY NOT NAMEDcoord: 12..162
score: 7.5

The following gene(s) are paralogous to this gene:

None