Cp4.1LG01g21810 (gene) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGTTTATCCAACTTTGCCGTTGCTGAACCTGCTCTTTCCTTCTCGAACGCGCCAATGTCCAGGCTAATCTCTCATTCCCCAAGCAATGTCTTCTTCTTCTTCTCCCAGAATTCGGATTTATTTTCGTAATGGCTACAAATTTTTGACAGATTAGGAATTTAGCGTTAACACCAACGCCTCCTGCGTGATTGTGTGGACGTAAGATTTCTGAAACAAGGCAAGACTGTTCATGCGTTTTTGTTAAAATCGAAATTTTAAAACCACGATTCTCTGGTTTTGCTTAATCATGTTGCTCACTCTCGCTCGAAATGCTCCGATATTGGTGCTGCATGCCACCTGTTTGATCAAATGTCCCAGAGAGACATCTTTTCTTGGATTGGCTAACAATGATTTTTTCCTCGATTGGTTTTGAGTAATTCTGTGAAATGCAGAGTCAGGGAGTTTTTCCAGATCAGTCTGCATATTCTTGTATCTTGGTTTGGAGACCATTATATTGGGCAAAATGGTTCATCCCAGATTATTATTAGAGGCTTTGCATCTCTTTCTTTTGTGTATACTGCTCTTCTTAATATGTATGCAAGGTTACAAGAGATTCAGGATTCATTCAAGGTGTTTAACACCATGACTGAAGTTAATGTAGTCTCGTGGAATGCCATGATCTCGGGGTTCACATTAAATGGTCTTTACTCAGAGGCATATGATCATTTTCTCAGAATGAAGGGAGAAGGAGTAACACCCGATGCACAATCGTTTATTGGCATTGCAAAAGCTATGGGTATGTTAGGAGCCGTGAGCAAGGCAAAAGAAGTTAGCCATTTTGCTTCAGAGTTAGGTGTGGACTCCAATACTCTTGTTGATATGCATTCTAAATGTAGATCTTTGCAAGAGGCAGATCCATCTTTGACCCTCATTTTACAAATTGTCGGGTTAACGTCCCGCGGAATGCAATGATTTTGGGTATTTATAGAGAGTGAGTGTAATGAAAAAACCTTGGAATTATTTGCCAAAATGTGTCAAAATGACATACACTCGGACCATTACACTTATTGTAGTGTATTTAATGCCATAGCTGAGTCGGGAAAGAAGGTTCATGCCCAGGCTATAAAATCAGGATTGGAAGTGAATCATATAAGTACCTGAAATGCAGTGGCTAATGCGTATGCTAAACGTGGATCGCTGGATGATGTAAGGAAGGTTTTTTTTCAGGGTGGAAGAAAGAGATTTAGTACCTTGGACCACCCTGGTGACTGCTTATTCTCAGTGTTCTGAATGGGACAAAGCAATAGAAATCTTCTCAAATATGAGAAGAGAAGGCTTTACACCCAATCAATTCTCATTTTCTAGCATGCTTGTTTCATGTGCCAGCCTTTGCTTACTCGAGTACGTCCACAAGAAGTCCATGGTATCCCCTGCAAGGTTGGCTTGGATATGAACAAAATGCATAGAAAGTGCTCTGATTGACATGTATGCCAAATGCGGCAGTCTGGCCGAGGCGAAAGAAGGTTTTCGATAGAATCTCTAACGCCGATACAGTTTCGTGGACTGCTATAATATTAGGTCGTGCTCAACACGATATTGTGGAAGGCACTCTTTGATTCTTTAGAAGGATGGAGCAGTTAGGTATGGAGCCCAATGCTGTTACTTTTTTGTGTGTTCTATTTGTATGTAGCCATGGAAGTCTGGTAGAGGAAGGCCTACAGTACTTCACGCTAATGAAGGAAACTTATGGTGGTACCAGAGATGGAGCATTATTCCTGTGTTGTTGATCTCTTAAGTCGCGTGGGACATCTAAACTATGCAATGGAGTTTGTAAGCACGATGCCCATAGAGCCCAATGAAATGGTTTGGCAGACCTTGTTGGGAACATGTAGGGTTCATGGTAATGCTGAATTGGGAGAACTTGCTTCTCAGGAGATGCTTTATTCTAGAGCAAAAAACTCAGCTACCTATGTTCTTTTATCCAACACCTACATCTAGTTGGGGAGTTTCAAAGATGACTTAGTGTAACAGCCCAAGCCCACCGCTAACAGAAATTGTCCTCTTTAGACTTTCCCTCAAAGTTTTTAAAAGACATCTGCTAGGGAGAGGTTTCCACACCCTTATAAACAATGTTTCTTTTATTCCACACTCTTATAAGCTAAGTTTTATGCAGGTGGCCAACAGCATCCAGAAAAAGATAAATTTATGCTAAGCTAGAAGAGTTTAGGTTGAAGGCCAATTCTTTGGAGGATGTACTAGATTTGAGTTATGGCTGTAAGATGTGGACCTCAGATAAGTTATACGGATACAGATGGTATCCCCCGTCCACTCGACCAAATTCATAGGGGGAAAAAAAAGCTTCAGCCAAAGAGATCAAATTAAACAGTGAAGGCAAAAGGGTGCTTAAGAACTAAATTTGGTGGCTAAATGATTAGGACTTACAGATATGATTCTCTGCATCATTCAACTCTTGCAGGTTCTGAAATATGTATGATGCTGTACTTCATTAGATAAGGAAGAATAACGATTCGGGTTATGGAAATGATAAAAAGCGCCACGGATCAATGCTCGGTTCTATGAAAATCTTTTACTTTTTGACAATATGATTGCTATGTTGGGTGAAGGTTATCAGAAGTTTGACCTCTTTCATAATAATGCATCGTTATGATGTGCTAATTTGGAATCATAAAGCCTTTCTGCTTATGATTTTACTGGGGTCTACTGAACTTTGTCATACTCGAAGCAGTAAAATTTATCGTTACGTTACATGAATAAGTTTGGTAAGATATTTCTCAAAATCATCAGCAGTGGAAATGAAGGCATTTCTCTTTTCTCTCTCCTTCTGATTTACTTTTGTTTTAACTCTCTAAATTTGTCTTTTATTTTCCCTTGGAAACATGGCCTAGTTGTTTTATTTCCTGAATTCTATTTATCATGCCAAGAAACTATTTACTGTTTCTCCCGTGAATTAGCTGAAATGAGTAATACTGTTTTAACTTATTGTTATTATTGTTACATTTTCCTTTTTACCATAAGAGGAATTTGATTGTTCTTGAATTATTGGTTTCAGCTGCAGTGAAGTGATAACTGAAATAAAACATTTTGGCATGATCTCTCATAACTCGTTACTATGCTTCTTCTTCCCCTCCAATAACCTCACTAGGCTTTGTAGGTGTCATAAGACTGGTCTATGTCACCCAGACCCCCCAGGCATATCAGTAAAACAAAACTACTGTTCAAAAACAGTATCGTCTTAGATAATGCATTTAGTGAGTCAATCCTTGTCTTTAGAAGCATCACAATTGAAACTTAAGCGATTCTACGCGAGATCCCACATCGGTTGGAGAGGAGAACAAAACATTCTTTATAAGGGTGTGGAAGCCTCTCCCTAGCAAACACGTTTTAAAAACCTTGAGGGAAAGCTCCAAAGGGAAAGTCTAAAGAGGACAATATTTGCTAGCGGTGGGCTTTGACTGTTACATTCTACCTGGCTTATATTTACTATTGACATATCATCTATGGTTCCATGATTCTGGGTCAAGGTTCGAGATTTAATGACCTGAAACTCTTGTTGTCTACCAGAGCTGACTTTGGAGCAAATGGAGAAGAATTTTTCTGAAGATTAATGCAAGAGGTGGAGTTTTGGACGCCTCGAGGTCGGAATTGAAGAGAGGAAGAGGAAATAGGGCTCCTTGTTTATGGGGTTGAAGAAGAAAAAAGGGGGAAAGTGAGTTGCATGGGGGAGGGGGAAAATTGTGTGCCATTCAGGGACTATCCAAAAACCAATAACGAGACACAACAGTTGAAAGGCTGTTTTATGAAATGTCTTGTGGGTATGGCCCTCGCAGTGTTTGCTTGCTTGCTTGTAGTGCCATTATCTGTGGTCCTTTTGCTGGATTTATATGCCTACTTCCTTAACATGTGAAGAAGATGGGACAACCGACTTCCAGTGCGCGCACATATATATACATATACATACATATATGTATCCATCTCCAAGCCTTGAAACCGCCCCCGTGACCTGAAATGTTCAAATCTTTCTGTCAACATCAGTGGGGCATCAACAATATGGTACGTCTCTAAACTCAATGCTATACATTTTTCATTTTGTTGCTGCTTATACAGATTTATTCACCTTAA ATGAACCATTATATTGGGCAAAATGGTTCATCCCAGATTATTATTAGAGGCTTTGCATCTCTTTCTTTTGTGTATACTGCTCTTCTTAATATGTATGCAAGGTTACAAGAGATTCAGGATTCATTCAAGGTGTTTAACACCATGACTGAAGTTAATGTAGTCTCGTGGAATGCCATGATCTCGGGGTTCACATTAAATGGTCTTTACTCAGAGGCATATGATCATTTTCTCAGAATGAAGGGAGAAGGAGTAACACCCGATGCACAATCGTTTATTGGCATTGCAAAAGCTATGGGTATGTTAGGAGCCGTGAGCAAGGCAAAAGAAGTTAGCCATTTTGCTTCAGAGTTAGGTGTGGACTCCAATACTCTTGTTGATATGCATTCTAAATGTAGATCTTTGCAAGAGGCAGATCCATCTTTGACCCTCATTTTACAAATTGTCGGGGTGGAAGAAAGAGATTTAGTACCTTGGACCACCCTGATTTATTCACCTTAA ATGAACCATTATATTGGGCAAAATGGTTCATCCCAGATTATTATTAGAGGCTTTGCATCTCTTTCTTTTGTGTATACTGCTCTTCTTAATATGTATGCAAGGTTACAAGAGATTCAGGATTCATTCAAGGTGTTTAACACCATGACTGAAGTTAATGTAGTCTCGTGGAATGCCATGATCTCGGGGTTCACATTAAATGGTCTTTACTCAGAGGCATATGATCATTTTCTCAGAATGAAGGGAGAAGGAGTAACACCCGATGCACAATCGTTTATTGGCATTGCAAAAGCTATGGGTATGTTAGGAGCCGTGAGCAAGGCAAAAGAAGTTAGCCATTTTGCTTCAGAGTTAGGTGTGGACTCCAATACTCTTGTTGATATGCATTCTAAATGTAGATCTTTGCAAGAGGCAGATCCATCTTTGACCCTCATTTTACAAATTGTCGGGGTGGAAGAAAGAGATTTAGTACCTTGGACCACCCTGATTTATTCACCTTAA MNHYIGQNGSSQIIIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEVNVVSWNAMISGFTLNGLYSEAYDHFLRMKGEGVTPDAQSFIGIAKAMGMLGAVSKAKEVSHFASELGVDSNTLVDMHSKCRSLQEADPSLTLILQIVGVEERDLVPWTTLIYSP
BLAST of Cp4.1LG01g21810 vs. Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2) HSP 1 Score: 94.0 bits (232), Expect = 1.7e-18 Identity = 52/163 (31.90%), Postives = 96/163 (58.90%), Query Frame = 1
BLAST of Cp4.1LG01g21810 vs. Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 3.5e-16 Identity = 50/163 (30.67%), Postives = 87/163 (53.37%), Query Frame = 1
BLAST of Cp4.1LG01g21810 vs. Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 7.8e-16 Identity = 46/163 (28.22%), Postives = 86/163 (52.76%), Query Frame = 1
BLAST of Cp4.1LG01g21810 vs. Swiss-Prot
Match: PP232_ARATH (Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 1.7e-15 Identity = 48/140 (34.29%), Postives = 79/140 (56.43%), Query Frame = 1
BLAST of Cp4.1LG01g21810 vs. Swiss-Prot
Match: PP165_ARATH (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 5.0e-15 Identity = 48/144 (33.33%), Postives = 81/144 (56.25%), Query Frame = 1
BLAST of Cp4.1LG01g21810 vs. TrEMBL
Match: A0A0A0KBQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013890 PE=4 SV=1) HSP 1 Score: 190.3 bits (482), Expect = 1.9e-45 Identity = 100/138 (72.46%), Postives = 116/138 (84.06%), Query Frame = 1
BLAST of Cp4.1LG01g21810 vs. TrEMBL
Match: V4SCU5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004388mg PE=4 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 4.7e-36 Identity = 87/163 (53.37%), Postives = 113/163 (69.33%), Query Frame = 1
BLAST of Cp4.1LG01g21810 vs. TrEMBL
Match: M5XS64_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa014747mg PE=4 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 3.4e-34 Identity = 82/163 (50.31%), Postives = 112/163 (68.71%), Query Frame = 1
BLAST of Cp4.1LG01g21810 vs. TrEMBL
Match: A0A068V210_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042072001 PE=4 SV=1) HSP 1 Score: 142.1 bits (357), Expect = 6.0e-31 Identity = 76/163 (46.63%), Postives = 105/163 (64.42%), Query Frame = 1
BLAST of Cp4.1LG01g21810 vs. TrEMBL
Match: A0A151S656_CAJCA (Pentatricopeptide repeat-containing protein At2g13600 family OS=Cajanus cajan GN=KK1_027967 PE=4 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 5.0e-30 Identity = 79/193 (40.93%), Postives = 115/193 (59.59%), Query Frame = 1
BLAST of Cp4.1LG01g21810 vs. TAIR10
Match: AT4G21065.1 (AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 94.0 bits (232), Expect = 9.4e-20 Identity = 52/163 (31.90%), Postives = 96/163 (58.90%), Query Frame = 1
BLAST of Cp4.1LG01g21810 vs. TAIR10
Match: AT3G61170.1 (AT3G61170.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 88.2 bits (217), Expect = 5.2e-18 Identity = 57/164 (34.76%), Postives = 86/164 (52.44%), Query Frame = 1
BLAST of Cp4.1LG01g21810 vs. TAIR10
Match: AT1G11290.1 (AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 86.3 bits (212), Expect = 2.0e-17 Identity = 50/163 (30.67%), Postives = 87/163 (53.37%), Query Frame = 1
BLAST of Cp4.1LG01g21810 vs. TAIR10
Match: AT2G33760.1 (AT2G33760.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 85.1 bits (209), Expect = 4.4e-17 Identity = 46/163 (28.22%), Postives = 86/163 (52.76%), Query Frame = 1
BLAST of Cp4.1LG01g21810 vs. TAIR10
Match: AT3G15130.1 (AT3G15130.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 84.0 bits (206), Expect = 9.7e-17 Identity = 48/140 (34.29%), Postives = 79/140 (56.43%), Query Frame = 1
BLAST of Cp4.1LG01g21810 vs. NCBI nr
Match: gi|659113785|ref|XP_008456754.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Cucumis melo]) HSP 1 Score: 194.9 bits (494), Expect = 1.1e-46 Identity = 102/138 (73.91%), Postives = 117/138 (84.78%), Query Frame = 1
BLAST of Cp4.1LG01g21810 vs. NCBI nr
Match: gi|778709607|ref|XP_011656423.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g25970 [Cucumis sativus]) HSP 1 Score: 190.3 bits (482), Expect = 2.7e-45 Identity = 100/138 (72.46%), Postives = 116/138 (84.06%), Query Frame = 1
BLAST of Cp4.1LG01g21810 vs. NCBI nr
Match: gi|700190613|gb|KGN45817.1| (hypothetical protein Csa_6G013890 [Cucumis sativus]) HSP 1 Score: 190.3 bits (482), Expect = 2.7e-45 Identity = 100/138 (72.46%), Postives = 116/138 (84.06%), Query Frame = 1
BLAST of Cp4.1LG01g21810 vs. NCBI nr
Match: gi|568874190|ref|XP_006490200.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g27110-like [Citrus sinensis]) HSP 1 Score: 162.2 bits (409), Expect = 8.0e-37 Identity = 89/163 (54.60%), Postives = 114/163 (69.94%), Query Frame = 1
BLAST of Cp4.1LG01g21810 vs. NCBI nr
Match: gi|567857726|ref|XP_006421546.1| (hypothetical protein CICLE_v10004388mg [Citrus clementina]) HSP 1 Score: 159.1 bits (401), Expect = 6.8e-36 Identity = 87/163 (53.37%), Postives = 113/163 (69.33%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |