CsaV3_5G028520 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G028520
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionpentatricopeptide repeat-containing protein At1g71060, mitochondrial
Locationchr5 : 23669544 .. 23672853 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAAATCTATTTAGGTCCTTTTGAATTAAATTAAAGTGCTGTGAATTAGTTTATAACTCTTGGATACTCACAGTGTAATCTCGGTTCAAGGTGTTCAGACTAAGGCTGAAGGTTGCTTTGGATAACATTACTTATTTTTTTTGTACTTTTGAAACTTTGAGTTATGTATTGAACTAAGTTTTAGGTAAGTGGAATTCTATTTGAAGAGTTGGTTTGTTGATTGTTAGCATTTTGAGTGTTTTTCTTATGTTATATCTATCATTCATGATGTAAATGCTTTATGTTCTTGAATTGTGTTTGCTTTTTGGATGTTTAAGCATATTGTAATGTTGAGTTAATATTTGTAACACTGACATGCTGATATACTATTTGTGTGACCCTATGTTTATGACTGATGAGTACACCCTGTTGCTATGCATATGATTTATGATGAAAGCGATTGTTATTTTATATGATTTTGACATAGAGTATGGTTTGGAGAAGTATGTTGTAGGTTTTATGTACTCTGGCGAGTTGAGAGAGAAAGAGCACCCTGTGTATTTACAAAGTTGCCTCGAATAAAAATGATCTAGAGGTGATAATTCACTATTGGCTTGAGAGAGATTAAAACTCACCCATGTGTTTATGTGATTGATGCTTTTAATATTCTAGCCGAAGATTAATTGTTTTGCTTGATTTAAATTAAATTTTAGCTTGAGAGAGTGAGATCTAGATTAGAATTTGGATTCATGACTATTTGTTAATTCTTACACAAAAATTCTGCAGAAAGATGGGTAGAAGAAGGATGCAAGAAAGATGGTAGTAATTCGTTTTCTCTGATACTCCAATGGGTTTCCGTCAATCTCTCAGTTCCCTCCAAAGATTATTTCCAAGAACAAGTTCTTTCCAGTATGCATCAGCAAGATCAGTTTCTTGTTCAAAAACAATCACTAAAAATCAAACTTCAATCTGCATTTCATCTCACTGTAACGAGCATTCAACTTTGCTTATTCCAAATCGCAATTACACCTCTCATCGCTCCACCCATCATCGTATTGAGCACAGCAAGCAGGATTTGAAAGCCAGCCAAAAATCTATCGTGGAAAGTGATGAAATCGCCCAGGATGCTGAAAAGTTTTGTAAGTTAATATCAAAAAACCCCAATTCTTGCATTGAATCATTGCTTGATGGTGCTCCAATGGAGTTGTCGCCCGCTCTGATTGTGGAGGTGTTGAAGAAGCTGAGCAATGCGGGGTTTCTTGCGCTTTCGTTCTTCAGGTGGGCAGAGAAGCAGAAAGGCTTCAAACACACTACAGAAAGCTACAACTTGTTAATTGAAGCATTGGGTAAGATCAAACAGTTCAATGTGATTTGGAATTTGGTGAGTGATATGAAACGCAAAGGAATTTTAAGTAGAGAAACATTTGCTTTAATAACTCGGAGATATGCCCGAGCTAGAAAAGTTAAGGAAGCAGTCGAGTCATTTGAGAAGATGGAGAAGTTTGGTTTTCAAATGGGAGTATCAGATTTCAATAGATTACTTGATACTCTATGCAAATCCAGAAACGTTAAGAAAGCACAAGAGGTGTTTGATAAAATGAAGCATGGAAGGTTCAAGCCTGATATCAAGTCCTACACGATTCTTTTAGAAGGGTGGGGTCAGGATCAGAACTTGTTGAAGTTGAATGAGGTTTATAGGGAGATGAGAGACGAAGGATTTGAACCCGATGTTGTTACTTTCGGTATTCTTATCAATGCACATTGCAAGGCAAGGAAGTATGATGAAGCAATTCGGTTGTTTCACGAAATGGAAGCAAAAAATATCAAGCCCTCACCTCATGTGTTCTGTACCTTAATCAATGGTTTGGGTTCTGAGAAGAGATTGAAAGAAGCTCTAGAGTTTTTCGAACAGTTGAAGTTAAGCGGCTTTGCTCCGGAGGCACCGACTTATAATGCTGTTGTGGGGGCTTACTGTTGGTCAATGAAGATGGCTTATGCATATAGGATGGTAGACGAGATGAGGAAATCTGGCGTTGGTCCTAACTCGAGGACATATGATATCATATTACATCACTTGATAAAGGGTAGGAAATCAAAGGAAGCTTATTCTGTTTTCCAGAGAATGAGTAGGGAGCCTGGGTGTGAACCAACTTTGAGTACATATGACATTATGATAAGAATGTTTTGCAACGAAGAAAGAGTGGATATGGCGATTCAGATTTGGGATGAAATGAAGGCTAAAGGAGTTCTTCCCGGAATGCACTTGTTCTCAACGTTGATTAATAGCTTGTGCCATGAGCACAAGTTGGAGGATGCTTGCACATACTTTCAAGAGATGTTGGATGTTGGTATTCGGCCGCCAGCAACCATGTTTAGCAATTTGAAACAGGCTCTTCTTGATGATGGTAGAAAGGATACTGCTTTACTTATGGCTGAGAAGATAAAAAAACTGAGAAAGGCGCCATTGGTTGGGTGAGTTGAGGGTTCTATTTGATAGTTACTTGAAAGTTTGGTTTGAAGAGACGACTCCTTGATTATAGGCAATGATATAAAAACATTATTGTGTTAAGGGACTCAAAAAGAATTTTGACACTTCTAACTCTGTAATTGTTTTCTGTGTTATTGATTAATGATCTTGCATATATACATATAGAATTTTCTTTAATGGTTTCAAGATCGTTATATTTCAA

mRNA sequence

ATGGGTTTCCGTCAATCTCTCAGTTCCCTCCAAAGATTATTTCCAAGAACAAGTTCTTTCCAGTATGCATCAGCAAGATCAGTTTCTTGTTCAAAAACAATCACTAAAAATCAAACTTCAATCTGCATTTCATCTCACTGTAACGAGCATTCAACTTTGCTTATTCCAAATCGCAATTACACCTCTCATCGCTCCACCCATCATCGTATTGAGCACAGCAAGCAGGATTTGAAAGCCAGCCAAAAATCTATCGTGGAAAGTGATGAAATCGCCCAGGATGCTGAAAAGTTTTGTAAGTTAATATCAAAAAACCCCAATTCTTGCATTGAATCATTGCTTGATGGTGCTCCAATGGAGTTGTCGCCCGCTCTGATTGTGGAGGTGTTGAAGAAGCTGAGCAATGCGGGGTTTCTTGCGCTTTCGTTCTTCAGGTGGGCAGAGAAGCAGAAAGGCTTCAAACACACTACAGAAAGCTACAACTTGTTAATTGAAGCATTGGGTAAGATCAAACAGTTCAATGTGATTTGGAATTTGGTGAGTGATATGAAACGCAAAGGAATTTTAAGTAGAGAAACATTTGCTTTAATAACTCGGAGATATGCCCGAGCTAGAAAAGTTAAGGAAGCAGTCGAGTCATTTGAGAAGATGGAGAAGTTTGGTTTTCAAATGGGAGTATCAGATTTCAATAGATTACTTGATACTCTATGCAAATCCAGAAACGTTAAGAAAGCACAAGAGGTGTTTGATAAAATGAAGCATGGAAGGTTCAAGCCTGATATCAAGTCCTACACGATTCTTTTAGAAGGGTGGGGTCAGGATCAGAACTTGTTGAAGTTGAATGAGGTTTATAGGGAGATGAGAGACGAAGGATTTGAACCCGATGTTGTTACTTTCGGTATTCTTATCAATGCACATTGCAAGGCAAGGAAGTATGATGAAGCAATTCGGTTGTTTCACGAAATGGAAGCAAAAAATATCAAGCCCTCACCTCATGTGTTCTGTACCTTAATCAATGGTTTGGGTTCTGAGAAGAGATTGAAAGAAGCTCTAGAGTTTTTCGAACAGTTGAAGTTAAGCGGCTTTGCTCCGGAGGCACCGACTTATAATGCTGTTGTGGGGGCTTACTGTTGGTCAATGAAGATGGCTTATGCATATAGGATGGTAGACGAGATGAGGAAATCTGGCGTTGGTCCTAACTCGAGGACATATGATATCATATTACATCACTTGATAAAGGGTAGGAAATCAAAGGAAGCTTATTCTGTTTTCCAGAGAATGAGTAGGGAGCCTGGGTGTGAACCAACTTTGAGTACATATGACATTATGATAAGAATGTTTTGCAACGAAGAAAGAGTGGATATGGCGATTCAGATTTGGGATGAAATGAAGGCTAAAGGAGTTCTTCCCGGAATGCACTTGTTCTCAACGTTGATTAATAGCTTGTGCCATGAGCACAAGTTGGAGGATGCTTGCACATACTTTCAAGAGATGTTGGATGTTGGTATTCGGCCGCCAGCAACCATGTTTAGCAATTTGAAACAGGCTCTTCTTGATGATGGTAGAAAGGATACTGCTTTACTTATGGCTGAGAAGATAAAAAAACTGAGAAAGGCGCCATTGGTTGGGTGA

Coding sequence (CDS)

ATGGGTTTCCGTCAATCTCTCAGTTCCCTCCAAAGATTATTTCCAAGAACAAGTTCTTTCCAGTATGCATCAGCAAGATCAGTTTCTTGTTCAAAAACAATCACTAAAAATCAAACTTCAATCTGCATTTCATCTCACTGTAACGAGCATTCAACTTTGCTTATTCCAAATCGCAATTACACCTCTCATCGCTCCACCCATCATCGTATTGAGCACAGCAAGCAGGATTTGAAAGCCAGCCAAAAATCTATCGTGGAAAGTGATGAAATCGCCCAGGATGCTGAAAAGTTTTGTAAGTTAATATCAAAAAACCCCAATTCTTGCATTGAATCATTGCTTGATGGTGCTCCAATGGAGTTGTCGCCCGCTCTGATTGTGGAGGTGTTGAAGAAGCTGAGCAATGCGGGGTTTCTTGCGCTTTCGTTCTTCAGGTGGGCAGAGAAGCAGAAAGGCTTCAAACACACTACAGAAAGCTACAACTTGTTAATTGAAGCATTGGGTAAGATCAAACAGTTCAATGTGATTTGGAATTTGGTGAGTGATATGAAACGCAAAGGAATTTTAAGTAGAGAAACATTTGCTTTAATAACTCGGAGATATGCCCGAGCTAGAAAAGTTAAGGAAGCAGTCGAGTCATTTGAGAAGATGGAGAAGTTTGGTTTTCAAATGGGAGTATCAGATTTCAATAGATTACTTGATACTCTATGCAAATCCAGAAACGTTAAGAAAGCACAAGAGGTGTTTGATAAAATGAAGCATGGAAGGTTCAAGCCTGATATCAAGTCCTACACGATTCTTTTAGAAGGGTGGGGTCAGGATCAGAACTTGTTGAAGTTGAATGAGGTTTATAGGGAGATGAGAGACGAAGGATTTGAACCCGATGTTGTTACTTTCGGTATTCTTATCAATGCACATTGCAAGGCAAGGAAGTATGATGAAGCAATTCGGTTGTTTCACGAAATGGAAGCAAAAAATATCAAGCCCTCACCTCATGTGTTCTGTACCTTAATCAATGGTTTGGGTTCTGAGAAGAGATTGAAAGAAGCTCTAGAGTTTTTCGAACAGTTGAAGTTAAGCGGCTTTGCTCCGGAGGCACCGACTTATAATGCTGTTGTGGGGGCTTACTGTTGGTCAATGAAGATGGCTTATGCATATAGGATGGTAGACGAGATGAGGAAATCTGGCGTTGGTCCTAACTCGAGGACATATGATATCATATTACATCACTTGATAAAGGGTAGGAAATCAAAGGAAGCTTATTCTGTTTTCCAGAGAATGAGTAGGGAGCCTGGGTGTGAACCAACTTTGAGTACATATGACATTATGATAAGAATGTTTTGCAACGAAGAAAGAGTGGATATGGCGATTCAGATTTGGGATGAAATGAAGGCTAAAGGAGTTCTTCCCGGAATGCACTTGTTCTCAACGTTGATTAATAGCTTGTGCCATGAGCACAAGTTGGAGGATGCTTGCACATACTTTCAAGAGATGTTGGATGTTGGTATTCGGCCGCCAGCAACCATGTTTAGCAATTTGAAACAGGCTCTTCTTGATGATGGTAGAAAGGATACTGCTTTACTTATGGCTGAGAAGATAAAAAAACTGAGAAAGGCGCCATTGGTTGGGTGA

Protein sequence

MGFRQSLSSLQRLFPRTSSFQYASARSVSCSKTITKNQTSICISSHCNEHSTLLIPNRNYTSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLLDGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALLDDGRKDTALLMAEKIKKLRKAPLVG
Homology
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BLAST of CsaV3_5G028520 vs. NCBI nr
Match: XP_004150483.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucumis sativus] >KGN51506.1 hypothetical protein Csa_5G571490 [Cucumis sativus])

HSP 1 Score: 450.3 bits (1157), Expect = 9.4e-123
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0 

Query: 1   MGFRQSLSSLQRLFPRTSSFQYASARSVSCSKTITKNQTSICISSHCNEHSTLLIPNRNY 60
           MGFRQSLSSLQRLFPRTSSFQYASARSVSCSKTITKNQTSICISSHCNEHSTLLIPNRNY
Sbjct: 1   MGFRQSLSSLQRLFPRTSSFQYASARSVSCSKTITKNQTSICISSHCNEHSTLLIPNRNY 60

Query: 61  TSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLLDGAPMEL 120
           TSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLLDGAPMEL
Sbjct: 61  TSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLLDGAPMEL 120

Query: 121 SPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVS 180
           SPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVS
Sbjct: 121 SPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVS 180

Query: 181 DMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDT 235
           DMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDT
Sbjct: 181 DMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDT 234

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BLAST of CsaV3_5G028520 vs. NCBI nr
Match: XP_008467144.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucumis melo])

HSP 1 Score: 404.8 bits (1039), Expect = 4.5e-109
Identity = 211/234 (90.17%), Postives = 219/234 (93.59%), Query Frame = 0 

Query: 1   MGFRQSLSSLQRLFPRTSSFQYASARSVSCSKTITKNQTSICISSHCNEHSTLLIPNRNY 60
           MGFR+SLSSLQRLFPRTSSFQYASARS SCSKTIT+NQTSICISS CNEHST  I NRNY
Sbjct: 1   MGFRRSLSSLQRLFPRTSSFQYASARSFSCSKTITRNQTSICISSRCNEHSTWPILNRNY 60

Query: 61  TSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLLDGAPMEL 120
           TS  STHH  EHSKQDL+A QKSI+ESDEI QDAEKFCKLISKNPNSCIESLLDGA +EL
Sbjct: 61  TSQHSTHHGNEHSKQDLEAGQKSIMESDEITQDAEKFCKLISKNPNSCIESLLDGAALEL 120

Query: 121 SPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVS 180
           SPALI EVLKKL NAGFLALSFFRWAEKQKGFKHTTESYN LIEALGKIKQFNVIWNLVS
Sbjct: 121 SPALIEEVLKKLCNAGFLALSFFRWAEKQKGFKHTTESYNCLIEALGKIKQFNVIWNLVS 180

Query: 181 DMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDT 235
           DMKRKGILSRETFALITRRYARARKVKEA+ESFEKMEKFGFQ+GVSDFNRL+DT
Sbjct: 181 DMKRKGILSRETFALITRRYARARKVKEAIESFEKMEKFGFQLGVSDFNRLIDT 234

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BLAST of CsaV3_5G028520 vs. NCBI nr
Match: XP_022989978.1 (pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucurbita maxima])

HSP 1 Score: 344.4 bits (882), Expect = 7.3e-91
Identity = 181/242 (74.79%), Postives = 208/242 (85.95%), Query Frame = 0 

Query: 1   MGFRQSLSSLQRLFPRTSSFQ--------YASARSVSCSKTITKNQTSICISSHCNEHST 60
           MGFRQSLSSL+RL  RTSSF           S+RSVS S  IT+NQT IC SS CN+HST
Sbjct: 1   MGFRQSLSSLRRLPRRTSSFHSLRSSSYTTGSSRSVSRSPAITRNQTPICTSSRCNDHST 60

Query: 61  LLIPNRNYTSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESL 120
            +IPNR+Y SH  + H  EHSKQD +A + SI+ S EIAQDAEK CKL++K+P+SCIESL
Sbjct: 61  GVIPNRSYASHHFSDHGTEHSKQDSEADEISIIASAEIAQDAEKICKLLTKSPSSCIESL 120

Query: 121 LDGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQF 180
           LDGA +E+SPAL+VEVLKK+SNAGFLAL+FFRWAEKQKGFKHTTESYN LIE+LGKIKQF
Sbjct: 121 LDGASIEVSPALVVEVLKKMSNAGFLALAFFRWAEKQKGFKHTTESYNSLIESLGKIKQF 180

Query: 181 NVIWNLVSDMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLL 235
           NVIWNLV+DMKRKGILSRETFALI+RRYARARKVKEA+E+FEKMEKFGFQ+G+SDFNRL+
Sbjct: 181 NVIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLI 240

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BLAST of CsaV3_5G028520 vs. NCBI nr
Match: XP_023539133.1 (pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 337.4 bits (864), Expect = 8.9e-89
Identity = 179/241 (74.27%), Postives = 203/241 (84.23%), Query Frame = 0 

Query: 1   MGFRQSLSSLQRLFPRTSSFQ-------YASARSVSCSKTITKNQTSICISSHCNEHSTL 60
           MGFRQ LSSL+ L  R SSF          S+RSVS S  IT+NQT IC SS CN+HST 
Sbjct: 1   MGFRQFLSSLRGLSRRISSFHSLPSSSYTCSSRSVSRSPAITRNQTPICTSSRCNDHSTG 60

Query: 61  LIPNRNYTSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLL 120
           +IPNR+Y SH  + H  EHSKQD  A + SI+ S EIAQDAEK CKL++KNP+SCIESLL
Sbjct: 61  VIPNRSYASHHFSDHGTEHSKQDSDADEISIMASAEIAQDAEKICKLLTKNPSSCIESLL 120

Query: 121 DGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFN 180
           DGA +E+SPAL+VEVLKK+SNAG LALSFFRWAEKQKGFKHTTESYN LIE+LGKIKQFN
Sbjct: 121 DGASIEVSPALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIESLGKIKQFN 180

Query: 181 VIWNLVSDMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLD 235
           VIWNLV+DMKRKGILSRETFALI+RRYARARKVKEA+E+FEKMEKFGFQ+G+SDFNRL+D
Sbjct: 181 VIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLID 240

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BLAST of CsaV3_5G028520 vs. NCBI nr
Match: XP_022960260.1 (pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucurbita moschata])

HSP 1 Score: 334.3 bits (856), Expect = 7.5e-88
Identity = 178/242 (73.55%), Postives = 202/242 (83.47%), Query Frame = 0 

Query: 1   MGFRQSLSSLQRLFPRTSSFQ--------YASARSVSCSKTITKNQTSICISSHCNEHST 60
           MGFRQ LSSL+ L  RTSSF           S RSVS S  IT+NQT IC SS CN+HS 
Sbjct: 1   MGFRQFLSSLRGLSRRTSSFHSLPSSSSYTGSFRSVSRSPAITRNQTPICTSSRCNDHSA 60

Query: 61  LLIPNRNYTSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESL 120
            +IPNR+Y SH  + H  EHSKQD  A + SI+ S EIAQDAEK CKL++K+P+SCIESL
Sbjct: 61  GVIPNRSYASHHFSDHGTEHSKQDSDADEISIMASAEIAQDAEKICKLLTKSPSSCIESL 120

Query: 121 LDGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQF 180
           LDGA +E+SPAL+VEVLKK+SNAG LALSFFRWAEKQKGFKHTTESYN LIE+LGKIKQF
Sbjct: 121 LDGASIEVSPALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIESLGKIKQF 180

Query: 181 NVIWNLVSDMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLL 235
           NVIWNLV+DMKRKGILSRETFALI+RRYARARKVKEA+E+FEKMEKFGFQ+G+SDFNRL+
Sbjct: 181 NVIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLI 240

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BLAST of CsaV3_5G028520 vs. TAIR10
Match: AT1G71060.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 204.1 bits (518), Expect = 2.1e-52
Identity = 102/156 (65.38%), Postives = 132/156 (84.62%), Query Frame = 0 

Query: 79  ASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLLDGAPMELSPALIVEVLKKLSNAGFL 138
           +S ++ V +++ +QDAE+ CK+++K  +S +E+LL+ A ++LSPALI EVLKKLSNAG L
Sbjct: 51  SSVETQVSANDASQDAERICKILTKFTDSKVETLLNEASVKLSPALIEEVLKKLSNAGVL 110

Query: 139 ALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITR 198
           ALS F+WAE QKGFKHTT +YN LIE+LGKIKQF +IW+LV DMK K +LS+ETFALI+R
Sbjct: 111 ALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALISR 170

Query: 199 RYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDT 235
           RYARARKVKEA+ +F KME+FGF+M  SDFNR+LDT
Sbjct: 171 RYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDT 206

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BLAST of CsaV3_5G028520 vs. TAIR10
Match: AT1G77360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-26
Identity = 52/144 (36.11%), Postives = 97/144 (67.36%), Query Frame = 0 

Query: 89  EIAQDAEKFCKLISKNPNSCIESLLDGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEK 148
           ++A  A+   K++  +P   ++S LD + + +S  ++ +VL +  NAG L   FF+W+EK
Sbjct: 67  DVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEK 126

Query: 149 QKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITRRYARARKVKE 208
           Q+ ++H+  +Y+++IE+  KI+Q+ ++W+L++ M++K +L+ ETF ++ R+YARA+KV E
Sbjct: 127 QRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQKVDE 186

Query: 209 AVESFEKMEKFGFQMGVSDFNRLL 233
           A+ +F  MEK+     +  FN LL
Sbjct: 187 AIYAFNVMEKYDLPPNLVAFNGLL 210

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BLAST of CsaV3_5G028520 vs. TAIR10
Match: AT3G62540.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 104.0 bits (258), Expect = 3.0e-22
Identity = 57/154 (37.01%), Postives = 97/154 (62.99%), Query Frame = 0 

Query: 83  SIVESDEIAQDAEKFCKLISK--NPNSCIESLLDGAPMELSPALIVEVLKKLSNAGFLAL 142
           S VES    ++ E+ CK+I +    +  +E++LD   ++LS  LIVEVL++  +A   A 
Sbjct: 120 SCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAF 179

Query: 143 SFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITRRY 202
            FF WA +++GF H + +YN ++  L K +QF  + +++ +M  KG+L+ ETF +  + +
Sbjct: 180 RFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAF 239

Query: 203 ARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDT 235
           A A++ K+AV  FE M+K+ F++GV   N LLD+
Sbjct: 240 AAAKERKKAVGIFELMKKYKFKIGVETINCLLDS 273

[Close]
BLAST of CsaV3_5G028520 vs. TAIR10
Match: AT3G62470.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 103.6 bits (257), Expect = 3.9e-22
Identity = 57/154 (37.01%), Postives = 97/154 (62.99%), Query Frame = 0 

Query: 83  SIVESDEIAQDAEKFCKLISK--NPNSCIESLLDGAPMELSPALIVEVLKKLSNAGFLAL 142
           S VES    ++ E+ CK+I +    +  +E++LD   ++LS  LIVEVL++  +A   A 
Sbjct: 120 SCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAF 179

Query: 143 SFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITRRY 202
            FF WA +++GF H + +YN ++  L K +QF  + +++ +M  KG+L+ ETF +  + +
Sbjct: 180 RFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAF 239

Query: 203 ARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDT 235
           A A++ K+AV  FE M+K+ F++GV   N LLD+
Sbjct: 240 AAAKERKKAVGIFELMKKYKFKIGVETINCLLDS 273

[Close]
BLAST of CsaV3_5G028520 vs. TAIR10
Match: AT5G14820.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 103.6 bits (257), Expect = 3.9e-22
Identity = 57/154 (37.01%), Postives = 97/154 (62.99%), Query Frame = 0 

Query: 83  SIVESDEIAQDAEKFCKLISK--NPNSCIESLLDGAPMELSPALIVEVLKKLSNAGFLAL 142
           S VES    ++ E+ CK+I +    +  +E++LD   ++LS  LIVEVL++  +A   A 
Sbjct: 119 SCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAF 178

Query: 143 SFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITRRY 202
            FF WA +++GF H + +YN ++  L K +QF  + +++ +M  KG+L+ ETF +  + +
Sbjct: 179 RFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAF 238

Query: 203 ARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDT 235
           A A++ K+AV  FE M+K+ F++GV   N LLD+
Sbjct: 239 AAAKERKKAVGIFELMKKYKFKIGVETINCLLDS 272

[Close]
BLAST of CsaV3_5G028520 vs. Swiss-Prot
Match: sp|Q9C9A2|PP112_ARATH (Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g71060 PE=2 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.8e-51
Identity = 102/156 (65.38%), Postives = 132/156 (84.62%), Query Frame = 0 

Query: 79  ASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLLDGAPMELSPALIVEVLKKLSNAGFL 138
           +S ++ V +++ +QDAE+ CK+++K  +S +E+LL+ A ++LSPALI EVLKKLSNAG L
Sbjct: 51  SSVETQVSANDASQDAERICKILTKFTDSKVETLLNEASVKLSPALIEEVLKKLSNAGVL 110

Query: 139 ALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITR 198
           ALS F+WAE QKGFKHTT +YN LIE+LGKIKQF +IW+LV DMK K +LS+ETFALI+R
Sbjct: 111 ALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALISR 170

Query: 199 RYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDT 235
           RYARARKVKEA+ +F KME+FGF+M  SDFNR+LDT
Sbjct: 171 RYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDT 206

[Close]
BLAST of CsaV3_5G028520 vs. Swiss-Prot
Match: sp|Q9FVX2|PP129_ARATH (Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g77360 PE=2 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 3.6e-25
Identity = 52/144 (36.11%), Postives = 97/144 (67.36%), Query Frame = 0 

Query: 89  EIAQDAEKFCKLISKNPNSCIESLLDGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEK 148
           ++A  A+   K++  +P   ++S LD + + +S  ++ +VL +  NAG L   FF+W+EK
Sbjct: 67  DVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEK 126

Query: 149 QKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITRRYARARKVKE 208
           Q+ ++H+  +Y+++IE+  KI+Q+ ++W+L++ M++K +L+ ETF ++ R+YARA+KV E
Sbjct: 127 QRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQKVDE 186

Query: 209 AVESFEKMEKFGFQMGVSDFNRLL 233
           A+ +F  MEK+     +  FN LL
Sbjct: 187 AIYAFNVMEKYDLPPNLVAFNGLL 210

[Close]
BLAST of CsaV3_5G028520 vs. Swiss-Prot
Match: sp|Q3EAF8|PP294_ARATH (Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g62540 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 5.4e-21
Identity = 57/154 (37.01%), Postives = 97/154 (62.99%), Query Frame = 0 

Query: 83  SIVESDEIAQDAEKFCKLISK--NPNSCIESLLDGAPMELSPALIVEVLKKLSNAGFLAL 142
           S VES    ++ E+ CK+I +    +  +E++LD   ++LS  LIVEVL++  +A   A 
Sbjct: 120 SCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAF 179

Query: 143 SFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITRRY 202
            FF WA +++GF H + +YN ++  L K +QF  + +++ +M  KG+L+ ETF +  + +
Sbjct: 180 RFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAF 239

Query: 203 ARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDT 235
           A A++ K+AV  FE M+K+ F++GV   N LLD+
Sbjct: 240 AAAKERKKAVGIFELMKKYKFKIGVETINCLLDS 273

[Close]
BLAST of CsaV3_5G028520 vs. Swiss-Prot
Match: sp|Q9LZP3|PP293_ARATH (Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g62470 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 7.1e-21
Identity = 57/154 (37.01%), Postives = 97/154 (62.99%), Query Frame = 0 

Query: 83  SIVESDEIAQDAEKFCKLISK--NPNSCIESLLDGAPMELSPALIVEVLKKLSNAGFLAL 142
           S VES    ++ E+ CK+I +    +  +E++LD   ++LS  LIVEVL++  +A   A 
Sbjct: 120 SCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAF 179

Query: 143 SFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITRRY 202
            FF WA +++GF H + +YN ++  L K +QF  + +++ +M  KG+L+ ETF +  + +
Sbjct: 180 RFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAF 239

Query: 203 ARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDT 235
           A A++ K+AV  FE M+K+ F++GV   N LLD+
Sbjct: 240 AAAKERKKAVGIFELMKKYKFKIGVETINCLLDS 273

[Close]
BLAST of CsaV3_5G028520 vs. Swiss-Prot
Match: sp|Q9LEQ7|PP382_ARATH (Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g14820 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 7.1e-21
Identity = 57/154 (37.01%), Postives = 97/154 (62.99%), Query Frame = 0 

Query: 83  SIVESDEIAQDAEKFCKLISK--NPNSCIESLLDGAPMELSPALIVEVLKKLSNAGFLAL 142
           S VES    ++ E+ CK+I +    +  +E++LD   ++LS  LIVEVL++  +A   A 
Sbjct: 119 SCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAF 178

Query: 143 SFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITRRY 202
            FF WA +++GF H + +YN ++  L K +QF  + +++ +M  KG+L+ ETF +  + +
Sbjct: 179 RFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAF 238

Query: 203 ARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDT 235
           A A++ K+AV  FE M+K+ F++GV   N LLD+
Sbjct: 239 AAAKERKKAVGIFELMKKYKFKIGVETINCLLDS 272

[Close]
BLAST of CsaV3_5G028520 vs. TrEMBL
Match: tr|A0A0A0KUY5|A0A0A0KUY5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571490 PE=4 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 6.2e-123
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0 

Query: 1   MGFRQSLSSLQRLFPRTSSFQYASARSVSCSKTITKNQTSICISSHCNEHSTLLIPNRNY 60
           MGFRQSLSSLQRLFPRTSSFQYASARSVSCSKTITKNQTSICISSHCNEHSTLLIPNRNY
Sbjct: 1   MGFRQSLSSLQRLFPRTSSFQYASARSVSCSKTITKNQTSICISSHCNEHSTLLIPNRNY 60

Query: 61  TSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLLDGAPMEL 120
           TSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLLDGAPMEL
Sbjct: 61  TSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLLDGAPMEL 120

Query: 121 SPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVS 180
           SPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVS
Sbjct: 121 SPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVS 180

Query: 181 DMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDT 235
           DMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDT
Sbjct: 181 DMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDT 234

[Close]
BLAST of CsaV3_5G028520 vs. TrEMBL
Match: tr|A0A1S3CT11|A0A1S3CT11_CUCME (pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103504569 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 3.0e-109
Identity = 211/234 (90.17%), Postives = 219/234 (93.59%), Query Frame = 0 

Query: 1   MGFRQSLSSLQRLFPRTSSFQYASARSVSCSKTITKNQTSICISSHCNEHSTLLIPNRNY 60
           MGFR+SLSSLQRLFPRTSSFQYASARS SCSKTIT+NQTSICISS CNEHST  I NRNY
Sbjct: 1   MGFRRSLSSLQRLFPRTSSFQYASARSFSCSKTITRNQTSICISSRCNEHSTWPILNRNY 60

Query: 61  TSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLLDGAPMEL 120
           TS  STHH  EHSKQDL+A QKSI+ESDEI QDAEKFCKLISKNPNSCIESLLDGA +EL
Sbjct: 61  TSQHSTHHGNEHSKQDLEAGQKSIMESDEITQDAEKFCKLISKNPNSCIESLLDGAALEL 120

Query: 121 SPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVS 180
           SPALI EVLKKL NAGFLALSFFRWAEKQKGFKHTTESYN LIEALGKIKQFNVIWNLVS
Sbjct: 121 SPALIEEVLKKLCNAGFLALSFFRWAEKQKGFKHTTESYNCLIEALGKIKQFNVIWNLVS 180

Query: 181 DMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDT 235
           DMKRKGILSRETFALITRRYARARKVKEA+ESFEKMEKFGFQ+GVSDFNRL+DT
Sbjct: 181 DMKRKGILSRETFALITRRYARARKVKEAIESFEKMEKFGFQLGVSDFNRLIDT 234

[Close]
BLAST of CsaV3_5G028520 vs. TrEMBL
Match: tr|A0A2K1YSH5|A0A2K1YSH5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G114700v3 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.5e-55
Identity = 131/228 (57.46%), Postives = 167/228 (73.25%), Query Frame = 0 

Query: 8   SSLQRLFPRTSSFQYASARSVSCSKTITKNQTSICISSHCNEHSTLLIPNRNYTSHRSTH 67
           SS     P   S  Y+S+  V  S    KNQT    S+   E+    + N ++  H+STH
Sbjct: 7   SSFLSRTPNNPSLLYSSSPFVLRSLVNIKNQTLSLNSTPNFENPFGSMLNPHFIVHKSTH 66

Query: 68  HRIEHSKQDLKAS-QKSIVESDEIAQDAEKFCKLISKNPNSCIESLLDGAPMELSPALIV 127
             ++ +     AS Q   V +D+I +DAE  CKL+SKNPNS +E+LL+ A ME+SP+L+ 
Sbjct: 67  TDLQQTVVLTDASNQTPQVLADKIVEDAENICKLLSKNPNSSVEALLNKASMEVSPSLVF 126

Query: 128 EVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKG 187
           E LKKLSNAG LALSFFRWAEKQKGF+++TESY+ LIE+LGKIKQFNVIWNLV+DMK+KG
Sbjct: 127 EALKKLSNAGALALSFFRWAEKQKGFQYSTESYHALIESLGKIKQFNVIWNLVTDMKQKG 186

Query: 188 ILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDT 235
           +L++ETFALI+RRYARARKVKEAV++F KMEKFG ++  SD NRLLDT
Sbjct: 187 LLNKETFALISRRYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDT 234

[Close]
BLAST of CsaV3_5G028520 vs. TrEMBL
Match: tr|A0A067KPG2|A0A067KPG2_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04675 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.0e-53
Identity = 111/173 (64.16%), Postives = 142/173 (82.08%), Query Frame = 0 

Query: 63  HRSTHHRIEHSKQDLKA-SQKSIVESDEIAQDAEKFCKLISKNPNSCIESLLDGAPMELS 122
           HRS H  +E ++  +   +Q   + + +I +D+EK C ++SKNPNS I++LLD   +E+S
Sbjct: 62  HRSIHSNVEQTQVLIDVDNQNPEISTCKITEDSEKICGILSKNPNSSIDTLLDNVSIEVS 121

Query: 123 PALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSD 182
           PAL++EVLKKLSNAGFLALSFF+WAEKQKG  ++TESYN LIE+LGKI+QF +IWNLVSD
Sbjct: 122 PALVLEVLKKLSNAGFLALSFFKWAEKQKGCMYSTESYNALIESLGKIRQFKMIWNLVSD 181

Query: 183 MKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDT 235
           MKRKG+LS+ETF LI+RRYARARKVKEAV++FEKME FG ++  SDFNRL DT
Sbjct: 182 MKRKGLLSKETFTLISRRYARARKVKEAVDTFEKMEMFGLKIESSDFNRLFDT 234

[Close]
BLAST of CsaV3_5G028520 vs. TrEMBL
Match: tr|A0A2C9UF74|A0A2C9UF74_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G126300 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.4e-53
Identity = 127/225 (56.44%), Postives = 164/225 (72.89%), Query Frame = 0 

Query: 13  LFPRTSSFQYASARSVSCSKTITKNQTSICISSHCNEH--STLLIPNRNYTSHRSTHHRI 72
           L  R+   +    RS+ CS+   K +     +S  N H  ST L+ N  +  HRS H  +
Sbjct: 9   LLSRSLCAESCLIRSLPCSQECFK-EKFFTFNSTTNSHNLSTPLL-NPYFIFHRSIHANL 68

Query: 73  EHSKQDL-KASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLLDGAPMELSPALIVEVL 132
           E S+  +    Q   + + +I +D EK C+L+SKNP   I+SLLD A +E+SPAL++EVL
Sbjct: 69  EQSQVLINNDDQNPEILTCKIIEDTEKICRLLSKNPTPGIQSLLDKASIEVSPALVLEVL 128

Query: 133 KKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGILS 192
           K+LSNAG LALSFFRWAEKQKGF ++TESYN LIE+LGKIKQFN++WNLVSDMKRK +L 
Sbjct: 129 KRLSNAGVLALSFFRWAEKQKGFVYSTESYNALIESLGKIKQFNMMWNLVSDMKRKKLLC 188

Query: 193 RETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDT 235
           +ETFALI+RRYARARKVKEA+++FEKMEKFG ++  SDFNRL+DT
Sbjct: 189 KETFALISRRYARARKVKEAIDAFEKMEKFGLKIEPSDFNRLIDT 231

The following BLAST results are available for this feature:
BLAST of CsaV3_5G028520 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004150483.19.4e-123100.00PREDICTED: pentatricopeptide repeat-containing protein At1g71060, mitochondrial ... [more]
XP_008467144.14.5e-10990.17PREDICTED: pentatricopeptide repeat-containing protein At1g71060, mitochondrial ... [more]
XP_022989978.17.3e-9174.79pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucurbita ... [more]
XP_023539133.18.9e-8974.27pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucurbita ... [more]
XP_022960260.17.5e-8873.55pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucurbita ... [more]
BLAST of CsaV3_5G028520 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G71060.12.1e-5265.38Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G77360.12.0e-2636.11Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G62540.13.0e-2237.01Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G62470.13.9e-2237.01Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G14820.13.9e-2237.01Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of CsaV3_5G028520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9C9A2|PP112_ARATH3.8e-5165.38Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidop... [more]
sp|Q9FVX2|PP129_ARATH3.6e-2536.11Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidop... [more]
sp|Q3EAF8|PP294_ARATH5.4e-2137.01Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidop... [more]
sp|Q9LZP3|PP293_ARATH7.1e-2137.01Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidop... [more]
sp|Q9LEQ7|PP382_ARATH7.1e-2137.01Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidop... [more]
BLAST of CsaV3_5G028520 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KUY5|A0A0A0KUY5_CUCSA6.2e-123100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571490 PE=4 SV=1[more]
tr|A0A1S3CT11|A0A1S3CT11_CUCME3.0e-10990.17pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Cucumis ... [more]
tr|A0A2K1YSH5|A0A2K1YSH5_POPTR1.5e-5557.46Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G114700v3 PE=... [more]
tr|A0A067KPG2|A0A067KPG2_JATCU1.0e-5364.16Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04675 PE=4 SV=1[more]
tr|A0A2C9UF74|A0A2C9UF74_MANES1.4e-5356.44Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G126300 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0009451 RNA modification
cellular_component GO:0005575 cellular_component
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0005515 protein binding
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G028520.1CsaV3_5G028520.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 75..255
e-value: 1.6E-23
score: 85.2
coord: 393..464
e-value: 4.7E-18
score: 67.3
coord: 465..537
e-value: 2.1E-9
score: 39.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 256..392
e-value: 5.8E-38
score: 133.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 402..435
e-value: 1.9E-5
score: 22.5
coord: 332..363
e-value: 8.3E-6
score: 23.7
coord: 296..329
e-value: 3.0E-10
score: 37.6
coord: 228..260
e-value: 5.2E-5
score: 21.1
coord: 262..295
e-value: 2.3E-5
score: 22.3
coord: 473..504
e-value: 5.9E-7
score: 27.3
coord: 367..399
e-value: 9.0E-4
score: 17.3
coord: 158..187
e-value: 0.0016
score: 16.4
coord: 438..469
e-value: 4.4E-8
score: 30.8
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 398..448
e-value: 1.4E-11
score: 44.3
coord: 228..269
e-value: 4.5E-10
score: 39.4
coord: 294..340
e-value: 2.7E-14
score: 53.0
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 367..396
e-value: 4.1E-4
score: 20.3
coord: 199..221
e-value: 0.037
score: 14.2
coord: 158..187
e-value: 0.064
score: 13.4
coord: 474..502
e-value: 4.4E-4
score: 20.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 224..258
score: 10.413
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 470..504
score: 10.435
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 155..185
score: 7.673
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 189..223
score: 9.383
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 329..363
score: 10.764
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 294..328
score: 13.592
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 435..469
score: 12.299
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 259..293
score: 10.227
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 505..539
score: 5.393
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 364..398
score: 10.435
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 399..434
score: 9.021
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 23..541
NoneNo IPR availablePANTHERPTHR24015:SF261SUBFAMILY NOT NAMEDcoord: 23..541
NoneNo IPR availableSUPERFAMILYSSF81901HCP-likecoord: 200..356

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G028520CSPI05G19690Wild cucumber (PI 183967)cpicucB284
CsaV3_5G028520Cucsa.280460Cucumber (Gy14) v1cgycucB428
CsaV3_5G028520CmaCh04G020950Cucurbita maxima (Rimu)cmacucB0888
CsaV3_5G028520CmoCh04G021980Cucurbita moschata (Rifu)cmocucB0878
CsaV3_5G028520CsGy5G019180Cucumber (Gy14) v2cgybcucB232
CsaV3_5G028520Carg26044Silver-seed gourdcarcucB0461
CsaV3_5G028520Cla003917Watermelon (97103) v1cucwmB441
CsaV3_5G028520ClCG01G006140Watermelon (Charleston Gray)cucwcgB394
CsaV3_5G028520Lsi09G006500Bottle gourd (USVL1VR-Ls)cuclsiB352
CsaV3_5G028520Cla97C01G006440Watermelon (97103) v2cucwmbB359
CsaV3_5G028520Bhi12G000771Wax gourdcucwgoB461
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G028520Wax gourdcucwgoB519
CsaV3_5G028520Cucumber (Chinese Long) v3cuccucB199
CsaV3_5G028520Silver-seed gourdcarcucB0217
CsaV3_5G028520Silver-seed gourdcarcucB0887
CsaV3_5G028520Silver-seed gourdcarcucB1098
CsaV3_5G028520Cucumber (Gy14) v2cgybcucB239
CsaV3_5G028520Cucumber (Gy14) v1cgycucB440
CsaV3_5G028520Cucurbita maxima (Rimu)cmacucB0355
CsaV3_5G028520Cucurbita maxima (Rimu)cmacucB0875
CsaV3_5G028520Cucurbita moschata (Rifu)cmocucB0350
CsaV3_5G028520Cucurbita moschata (Rifu)cmocucB0486
CsaV3_5G028520Cucurbita moschata (Rifu)cmocucB0863
CsaV3_5G028520Cucurbita pepo (Zucchini)cpecucB0053
CsaV3_5G028520Cucurbita pepo (Zucchini)cpecucB0212
CsaV3_5G028520Cucurbita pepo (Zucchini)cpecucB0547
CsaV3_5G028520Wild cucumber (PI 183967)cpicucB302
CsaV3_5G028520Bottle gourd (USVL1VR-Ls)cuclsiB391
CsaV3_5G028520Melon (DHL92) v3.5.1cucmeB350
CsaV3_5G028520Melon (DHL92) v3.5.1cucmeB376
CsaV3_5G028520Melon (DHL92) v3.6.1cucmedB342
CsaV3_5G028520Melon (DHL92) v3.6.1cucmedB366
CsaV3_5G028520Watermelon (Charleston Gray)cucwcgB412
CsaV3_5G028520Watermelon (97103) v1cucwmB424
CsaV3_5G028520Watermelon (97103) v2cucwmbB394