Carg26044 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26044
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	pentatricopeptide repeat-containing protein At1g71060, mitochondrial
Location	Cucurbita_argyrosperma_scaffold_258 : 47006 .. 48658 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTCCGTCAATCCCTCAGTTCGCTTCGTAGATTACCTCGAAGAACAAGTTCTTTCCACTCGCTACGATCTTCTTCTTACACTACCGGTTCATCGAGATCAGTTTCGCGTTCACCAGCAATTACCAGAAACCAAACTCCTATCTGTACTTCGTTCCGTTGTAATGATCATTCAACTGGGGTTATTCCGAATCGCAGTTACGCCTCTCACCATTTCAGCGATCATGGTACAGAGCACAGCAAACAGGATTCGGACGCCGACGAAATTTCAATCATGGCAAGTGTTGAGATTGCCCAGGATGCTGAAAAAATCTGTAAGTTGCTTACGAAAAGCCCTAGTTCTTGCATTGAATCATTACTTGATGGTGCTTCAATCGAGGTGTCGCCGGCTCTGGTTGTTGAGGTGCTGAAGAAGATGAGCAATGCGGGACTTCTTGCGCTGTCGTTTTTCAGGTGGGCCGAGAAGCAGAAAGGCTTCAAACACACAACGGAGAGCTACAACTCGTTAATCGAATCCCTCGGTAAGATCAAACAGTTCAATGTGATTTGGAATTTGGTGAATGATATGAAACGGAAAGGGATTTTAAGTAGAGAAACGTTTGCTTTAATTTCTCGAAGATATGCTCGAGCTAGAAAGGTTAAAGAAGCAATCGAGGCATTTGAGAAGATGGAGAAGTTTGGATTCCAACTGGGAATATCAGATTTCAATAGACTAATTGACACCCTGAGCAAATCGAGAAACGTTGGGCATGCACAAGAGGTGTTTGATAAAATGAAGCACAGAAGGTTCAAGCCTGATATCAAGTCTTACACAATTCTATTAGAAGGATGGGGTCAGGAGCAGAATTTGTTGAGGTTGAATGAGGTTTATAGGGAGATGAGAGACGATGGGTTTGAACCGGACGTCGTGACGTTCGGTATAGTTATCAATGCACATTGCAAGGCGAAGAAGTATGATGAAGCTATTCAGTTGTTTCACACAATGAAAGCTAAGAATGTCAAGCCATCACCTCATGTGTTCTGTACCTTAATCAATGGTTTGGGTTCTGAGAAAAGATTGAATGAGGCTCTAGAGTTTTTCAAACAATCAAAGTCGAGTGGCTATGCTCCGGAGGCACCGACTTATAATGCCGTGGTGGGGGCTTACTGCTGGTCGATGAAGATGGCTGATGCATATAGGACGGTTAACGACATGAAAAAACTAGGCATCGGTCCAAATTCGAGAACTTATGACATCATATTACATCATTTGATAAAGGCTGGGAGATCAAAAGAAGCTTATTCTGTTTTCGAGAGAATGAGTAGGGAGCCAGGGTGTGAACCAGCTTTGAGTACATATGAAATCATGGTGAGAATGTTATGCAATAAGGAGCGAGTAGACATGGCGATTCGGATTTGGGATCAAATGAAGGCCAGAGGAGTTCTTCCGGGAATGCATATGTTTTCAACATTGATTAACAGCTTGTGCCACGAGAACAAGTTAGAGTGTGCCTGCAAATACTTTGAAGAGATGCTGGATTTGGGTATTCGGCCGCCAGCAACAATGTTTAGCAATCTGAAACAGGCTCTTCTTGATGAGGGCAGACAGGATACAGCTTTACTTCTGGTAGAGAAACTCGATAGACTAAGAAAGGCACCATTGCACGGTTGA

mRNA sequence

ATGGGTTTCCGTCAATCCCTCAGTTCGCTTCGTAGATTACCTCGAAGAACAAGTTCTTTCCACTCGCTACGATCTTCTTCTTACACTACCGGTTCATCGAGATCAGTTTCGCGTTCACCAGCAATTACCAGAAACCAAACTCCTATCTGTACTTCGTTCCGTTGTAATGATCATTCAACTGGGGTTATTCCGAATCGCAGTTACGCCTCTCACCATTTCAGCGATCATGGTACAGAGCACAGCAAACAGGATTCGGACGCCGACGAAATTTCAATCATGGCAAGTGTTGAGATTGCCCAGGATGCTGAAAAAATCTGTAAGTTGCTTACGAAAAGCCCTAGTTCTTGCATTGAATCATTACTTGATGGTGCTTCAATCGAGGTGTCGCCGGCTCTGGTTGTTGAGGTGCTGAAGAAGATGAGCAATGCGGGACTTCTTGCGCTGTCGTTTTTCAGGTGGGCCGAGAAGCAGAAAGGCTTCAAACACACAACGGAGAGCTACAACTCGTTAATCGAATCCCTCGGTAAGATCAAACAGTTCAATGTGATTTGGAATTTGGTGAATGATATGAAACGGAAAGGGATTTTAAGTAGAGAAACGTTTGCTTTAATTTCTCGAAGATATGCTCGAGCTAGAAAGGTTAAAGAAGCAATCGAGGCATTTGAGAAGATGGAGAAGTTTGGATTCCAACTGGGAATATCAGATTTCAATAGACTAATTGACACCCTGAGCAAATCGAGAAACGTTGGGCATGCACAAGAGGTGTTTGATAAAATGAAGCACAGAAGGTTCAAGCCTGATATCAAGTCTTACACAATTCTATTAGAAGGATGGGGTCAGGAGCAGAATTTGTTGAGGTTGAATGAGGTTTATAGGGAGATGAGAGACGATGGGTTTGAACCGGACGTCGTGACGTTCGGTATAGTTATCAATGCACATTGCAAGGCGAAGAAGTATGATGAAGCTATTCAGTTGTTTCACACAATGAAAGCTAAGAATGTCAAGCCATCACCTCATGTGTTCTGTACCTTAATCAATGGTTTGGGTTCTGAGAAAAGATTGAATGAGGCTCTAGAGTTTTTCAAACAATCAAAGTCGAGTGGCTATGCTCCGGAGGCACCGACTTATAATGCCGTGGTGGGGGCTTACTGCTGGTCGATGAAGATGGCTGATGCATATAGGACGGTTAACGACATGAAAAAACTAGGCATCGGTCCAAATTCGAGAACTTATGACATCATATTACATCATTTGATAAAGGCTGGGAGATCAAAAGAAGCTTATTCTGTTTTCGAGAGAATGAGTAGGGAGCCAGGGTGTGAACCAGCTTTGAGTACATATGAAATCATGGTGAGAATGTTATGCAATAAGGAGCGAGTAGACATGGCGATTCGGATTTGGGATCAAATGAAGGCCAGAGGAGTTCTTCCGGGAATGCATATGTTTTCAACATTGATTAACAGCTTGTGCCACGAGAACAAGTTAGAGTGTGCCTGCAAATACTTTGAAGAGATGCTGGATTTGGGTATTCGGCCGCCAGCAACAATGTTTAGCAATCTGAAACAGGCTCTTCTTGATGAGGGCAGACAGGATACAGCTTTACTTCTGGTAGAGAAACTCGATAGACTAAGAAAGGCACCATTGCACGGTTGA

Coding sequence (CDS)

ATGGGTTTCCGTCAATCCCTCAGTTCGCTTCGTAGATTACCTCGAAGAACAAGTTCTTTCCACTCGCTACGATCTTCTTCTTACACTACCGGTTCATCGAGATCAGTTTCGCGTTCACCAGCAATTACCAGAAACCAAACTCCTATCTGTACTTCGTTCCGTTGTAATGATCATTCAACTGGGGTTATTCCGAATCGCAGTTACGCCTCTCACCATTTCAGCGATCATGGTACAGAGCACAGCAAACAGGATTCGGACGCCGACGAAATTTCAATCATGGCAAGTGTTGAGATTGCCCAGGATGCTGAAAAAATCTGTAAGTTGCTTACGAAAAGCCCTAGTTCTTGCATTGAATCATTACTTGATGGTGCTTCAATCGAGGTGTCGCCGGCTCTGGTTGTTGAGGTGCTGAAGAAGATGAGCAATGCGGGACTTCTTGCGCTGTCGTTTTTCAGGTGGGCCGAGAAGCAGAAAGGCTTCAAACACACAACGGAGAGCTACAACTCGTTAATCGAATCCCTCGGTAAGATCAAACAGTTCAATGTGATTTGGAATTTGGTGAATGATATGAAACGGAAAGGGATTTTAAGTAGAGAAACGTTTGCTTTAATTTCTCGAAGATATGCTCGAGCTAGAAAGGTTAAAGAAGCAATCGAGGCATTTGAGAAGATGGAGAAGTTTGGATTCCAACTGGGAATATCAGATTTCAATAGACTAATTGACACCCTGAGCAAATCGAGAAACGTTGGGCATGCACAAGAGGTGTTTGATAAAATGAAGCACAGAAGGTTCAAGCCTGATATCAAGTCTTACACAATTCTATTAGAAGGATGGGGTCAGGAGCAGAATTTGTTGAGGTTGAATGAGGTTTATAGGGAGATGAGAGACGATGGGTTTGAACCGGACGTCGTGACGTTCGGTATAGTTATCAATGCACATTGCAAGGCGAAGAAGTATGATGAAGCTATTCAGTTGTTTCACACAATGAAAGCTAAGAATGTCAAGCCATCACCTCATGTGTTCTGTACCTTAATCAATGGTTTGGGTTCTGAGAAAAGATTGAATGAGGCTCTAGAGTTTTTCAAACAATCAAAGTCGAGTGGCTATGCTCCGGAGGCACCGACTTATAATGCCGTGGTGGGGGCTTACTGCTGGTCGATGAAGATGGCTGATGCATATAGGACGGTTAACGACATGAAAAAACTAGGCATCGGTCCAAATTCGAGAACTTATGACATCATATTACATCATTTGATAAAGGCTGGGAGATCAAAAGAAGCTTATTCTGTTTTCGAGAGAATGAGTAGGGAGCCAGGGTGTGAACCAGCTTTGAGTACATATGAAATCATGGTGAGAATGTTATGCAATAAGGAGCGAGTAGACATGGCGATTCGGATTTGGGATCAAATGAAGGCCAGAGGAGTTCTTCCGGGAATGCATATGTTTTCAACATTGATTAACAGCTTGTGCCACGAGAACAAGTTAGAGTGTGCCTGCAAATACTTTGAAGAGATGCTGGATTTGGGTATTCGGCCGCCAGCAACAATGTTTAGCAATCTGAAACAGGCTCTTCTTGATGAGGGCAGACAGGATACAGCTTTACTTCTGGTAGAGAAACTCGATAGACTAAGAAAGGCACCATTGCACGGTTGA

Protein sequence

MGFRQSLSSLRRLPRRTSSFHSLRSSSYTTGSSRSVSRSPAITRNQTPICTSFRCNDHSTGVIPNRSYASHHFSDHGTEHSKQDSDADEISIMASVEIAQDAEKICKLLTKSPSSCIESLLDGASIEVSPALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIESLGKIKQFNVIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLIDTLSKSRNVGHAQEVFDKMKHRRFKPDIKSYTILLEGWGQEQNLLRLNEVYREMRDDGFEPDVVTFGIVINAHCKAKKYDEAIQLFHTMKAKNVKPSPHVFCTLINGLGSEKRLNEALEFFKQSKSSGYAPEAPTYNAVVGAYCWSMKMADAYRTVNDMKKLGIGPNSRTYDIILHHLIKAGRSKEAYSVFERMSREPGCEPALSTYEIMVRMLCNKERVDMAIRIWDQMKARGVLPGMHMFSTLINSLCHENKLECACKYFEEMLDLGIRPPATMFSNLKQALLDEGRQDTALLLVEKLDRLRKAPLHG

Homology

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BLAST of Carg26044 vs. NCBI nr
Match: XP_022989978.1 (pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucurbita maxima])

HSP 1 Score: 456.8 bits (1174), Expect = 1.0e-124
Identity = 463/472 (98.09%), Postives = 467/472 (98.94%), Query Frame = 0


Query: 1   MGFRQSLSSLRRLPRRTSSFHSLRSSSYTTGSSRSVSRSPAITRNQTPICTSFRCNDHST 60
           MGFRQSLSSLRRLPRRTSSFHSLRSSSYTTGSSRSVSRSPAITRNQTPICTS RCNDHST
Sbjct: 1   MGFRQSLSSLRRLPRRTSSFHSLRSSSYTTGSSRSVSRSPAITRNQTPICTSSRCNDHST 60

Query: 61  GVIPNRSYASHHFSDHGTEHSKQDSDADEISIMASVEIAQDAEKICKLLTKSPSSCIESL 120
           GVIPNRSYASHHFSDHGTEHSKQDS+ADEISI+AS EIAQDAEKICKLLTKSPSSCIESL
Sbjct: 61  GVIPNRSYASHHFSDHGTEHSKQDSEADEISIIASAEIAQDAEKICKLLTKSPSSCIESL 120

Query: 121 LDGASIEVSPALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIESLGKIKQF 180
           LDGASIEVSPALVVEVLKKMSNAG LAL+FFRWAEKQKGFKHTTESYNSLIESLGKIKQF
Sbjct: 121 LDGASIEVSPALVVEVLKKMSNAGFLALAFFRWAEKQKGFKHTTESYNSLIESLGKIKQF 180

Query: 181 NVIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLI 240
           NVIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLI
Sbjct: 181 NVIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLI 240

Query: 241 DTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           DTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 DTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXFERMSREPGCEPALSTYEIMVRMLCNKERVDMAIRIWDQMKA 473
           XXXXXXXXXX ERMSREPGCEP LSTYEIMVRMLCNKERVDMAI+IWDQMKA
Sbjct: 421 XXXXXXXXXXXERMSREPGCEPTLSTYEIMVRMLCNKERVDMAIQIWDQMKA 472

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BLAST of Carg26044 vs. NCBI nr
Match: XP_023539133.1 (pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 444.9 bits (1143), Expect = 4.0e-121
Identity = 462/472 (97.88%), Postives = 463/472 (98.09%), Query Frame = 0


Query: 1   MGFRQSLSSLRRLPRRTSSFHSLRSSSYTTGSSRSVSRSPAITRNQTPICTSFRCNDHST 60
           MGFRQ LSSLR L RR SSFHSL SSSYT  SSRSVSRSPAITRNQTPICTS RCNDHST
Sbjct: 1   MGFRQFLSSLRGLSRRISSFHSLPSSSYTC-SSRSVSRSPAITRNQTPICTSSRCNDHST 60

Query: 61  GVIPNRSYASHHFSDHGTEHSKQDSDADEISIMASVEIAQDAEKICKLLTKSPSSCIESL 120
           GVIPNRSYASHHFSDHGTEHSKQDSDADEISIMAS EIAQDAEKICKLLTK+PSSCIESL
Sbjct: 61  GVIPNRSYASHHFSDHGTEHSKQDSDADEISIMASAEIAQDAEKICKLLTKNPSSCIESL 120

Query: 121 LDGASIEVSPALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIESLGKIKQF 180
           LDGASIEVSPALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIESLGKIKQF
Sbjct: 121 LDGASIEVSPALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIESLGKIKQF 180

Query: 181 NVIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLI 240
           NVIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLI
Sbjct: 181 NVIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLI 240

Query: 241 DTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           DTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 DTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXFERMSREPGCEPALSTYEIMVRMLCNKERVDMAIRIWDQMKA 473
           XXXXXXXXXXFERMSREPGCEPALSTYEIMVRMLCNKERVDMAIRIWDQMKA
Sbjct: 421 XXXXXXXXXXFERMSREPGCEPALSTYEIMVRMLCNKERVDMAIRIWDQMKA 471

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BLAST of Carg26044 vs. NCBI nr
Match: XP_022960260.1 (pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucurbita moschata])

HSP 1 Score: 442.2 bits (1136), Expect = 2.6e-120
Identity = 460/472 (97.46%), Postives = 460/472 (97.46%), Query Frame = 0


Query: 1   MGFRQSLSSLRRLPRRTSSFHSLRSSSYTTGSSRSVSRSPAITRNQTPICTSFRCNDHST 60
           MGFRQ LSSLR L RRTSSFHSL SSS  TGS RSVSRSPAITRNQTPICTS RCNDHS 
Sbjct: 1   MGFRQFLSSLRGLSRRTSSFHSLPSSSSYTGSFRSVSRSPAITRNQTPICTSSRCNDHSA 60

Query: 61  GVIPNRSYASHHFSDHGTEHSKQDSDADEISIMASVEIAQDAEKICKLLTKSPSSCIESL 120
           GVIPNRSYASHHFSDHGTEHSKQDSDADEISIMAS EIAQDAEKICKLLTKSPSSCIESL
Sbjct: 61  GVIPNRSYASHHFSDHGTEHSKQDSDADEISIMASAEIAQDAEKICKLLTKSPSSCIESL 120

Query: 121 LDGASIEVSPALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIESLGKIKQF 180
           LDGASIEVSPALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIESLGKIKQF
Sbjct: 121 LDGASIEVSPALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIESLGKIKQF 180

Query: 181 NVIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLI 240
           NVIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLI
Sbjct: 181 NVIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLI 240

Query: 241 DTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           DTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 DTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXFERMSREPGCEPALSTYEIMVRMLCNKERVDMAIRIWDQMKA 473
           XXXXXXXXXX  RMSREPGCEPALSTYEIMVRMLCNKERVDMAIRIWDQMKA
Sbjct: 421 XXXXXXXXXXXXRMSREPGCEPALSTYEIMVRMLCNKERVDMAIRIWDQMKA 472

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BLAST of Carg26044 vs. NCBI nr
Match: XP_004150483.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucumis sativus] >KGN51506.1 hypothetical protein Csa_5G571490 [Cucumis sativus])

HSP 1 Score: 337.0 bits (863), Expect = 1.2e-88
Identity = 180/242 (74.38%), Postives = 205/242 (84.71%), Query Frame = 0


Query: 1   MGFRQSLSSLRRLPRRTSSFHSLRSSSYTTGSSRSVSRSPAITRNQTPICTSFRCNDHST 60
           MGFRQSLSSL+RL  RTSSF           S+RSVS S  IT+NQT IC S  CN+HST
Sbjct: 1   MGFRQSLSSLQRLFPRTSSFQ--------YASARSVSCSKTITKNQTSICISSHCNEHST 60

Query: 61  GVIPNRSYASHHFSDHGTEHSKQDSDADEISIMASVEIAQDAEKICKLLTKSPSSCIESL 120
            +IPNR+Y SH  + H  EHSKQD  A + SI+ S EIAQDAEK CKL++K+P+SCIESL
Sbjct: 61  LLIPNRNYTSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESL 120

Query: 121 LDGASIEVSPALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIESLGKIKQF 180
           LDGA +E+SPAL+VEVLKK+SNAG LALSFFRWAEKQKGFKHTTESYN LIE+LGKIKQF
Sbjct: 121 LDGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQF 180

Query: 181 NVIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLI 240
           NVIWNLV+DMKRKGILSRETFALI+RRYARARKVKEA+E+FEKMEKFGFQ+G+SDFNRL+
Sbjct: 181 NVIWNLVSDMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLL 234

Query: 241 DT 243
           DT
Sbjct: 241 DT 234

[Close]

BLAST of Carg26044 vs. NCBI nr
Match: XP_008467144.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucumis melo])

HSP 1 Score: 335.9 bits (860), Expect = 2.6e-88
Identity = 181/242 (74.79%), Postives = 203/242 (83.88%), Query Frame = 0


Query: 1   MGFRQSLSSLRRLPRRTSSFHSLRSSSYTTGSSRSVSRSPAITRNQTPICTSFRCNDHST 60
           MGFR+SLSSL+RL  RTSSF           S+RS S S  ITRNQT IC S RCN+HST
Sbjct: 1   MGFRRSLSSLQRLFPRTSSFQ--------YASARSFSCSKTITRNQTSICISSRCNEHST 60

Query: 61  GVIPNRSYASHHFSDHGTEHSKQDSDADEISIMASVEIAQDAEKICKLLTKSPSSCIESL 120
             I NR+Y S H + HG EHSKQD +A + SIM S EI QDAEK CKL++K+P+SCIESL
Sbjct: 61  WPILNRNYTSQHSTHHGNEHSKQDLEAGQKSIMESDEITQDAEKFCKLISKNPNSCIESL 120

Query: 121 LDGASIEVSPALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIESLGKIKQF 180
           LDGA++E+SPAL+ EVLKK+ NAG LALSFFRWAEKQKGFKHTTESYN LIE+LGKIKQF
Sbjct: 121 LDGAALELSPALIEEVLKKLCNAGFLALSFFRWAEKQKGFKHTTESYNCLIEALGKIKQF 180

Query: 181 NVIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLI 240
           NVIWNLV+DMKRKGILSRETFALI+RRYARARKVKEAIE+FEKMEKFGFQLG+SDFNRLI
Sbjct: 181 NVIWNLVSDMKRKGILSRETFALITRRYARARKVKEAIESFEKMEKFGFQLGVSDFNRLI 234

Query: 241 DT 243
           DT
Sbjct: 241 DT 234

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BLAST of Carg26044 vs. TAIR10
Match: AT1G71060.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 206.5 bits (524), Expect = 4.3e-53
Identity = 110/175 (62.86%), Postives = 137/175 (78.29%), Query Frame = 0


Query: 68  YASHHFSDHGTEHSKQDSDADEISIMASVEIAQDAEKICKLLTKSPSSCIESLLDGASIE 127
           Y S H S   T+ S  D+             +QDAE+ICK+LTK   S +E+LL+ AS++
Sbjct: 45  YGSFHASSVETQVSANDA-------------SQDAERICKILTKFTDSKVETLLNEASVK 104

Query: 128 VSPALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIESLGKIKQFNVIWNLV 187
           +SPAL+ EVLKK+SNAG+LALS F+WAE QKGFKHTT +YN+LIESLGKIKQF +IW+LV
Sbjct: 105 LSPALIEEVLKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLV 164

Query: 188 NDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLIDT 243
           +DMK K +LS+ETFALISRRYARARKVKEAI AF KME+FGF++  SDFNR++DT
Sbjct: 165 DDMKAKKLLSKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDT 206

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BLAST of Carg26044 vs. TAIR10
Match: AT1G77360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 125.9 bits (315), Expect = 7.5e-29
Identity = 61/144 (42.36%), Postives = 98/144 (68.06%), Query Frame = 0


Query: 97  EIAQDAEKICKLLTKSPSSCIESLLDGASIEVSPALVVEVLKKMSNAGLLALSFFRWAEK 156
           ++A  A+ I K+L  SP   ++S LD + + VS  +V +VL +  NAGLL   FF+W+EK
Sbjct: 67  DVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEK 126

Query: 157 QKGFKHTTESYNSLIESLGKIKQFNVIWNLVNDMKRKGILSRETFALISRRYARARKVKE 216
           Q+ ++H+  +Y+ +IES  KI+Q+ ++W+L+N M++K +L+ ETF ++ R+YARA+KV E
Sbjct: 127 QRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQKVDE 186

Query: 217 AIEAFEKMEKFGFQLGISDFNRLI 241
           AI AF  MEK+     +  FN L+
Sbjct: 187 AIYAFNVMEKYDLPPNLVAFNGLL 210

[Close]

BLAST of Carg26044 vs. TAIR10
Match: AT3G62540.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 102.8 bits (255), Expect = 6.8e-22
Identity = 58/181 (32.04%), Postives = 110/181 (60.77%), Query Frame = 0


Query: 67  SYASHHFSDHGTEHSKQDSDADE---ISIMASVEIAQDAEKICKLLTK--SPSSCIESLL 126
           S  S + SD   E  + + D DE   +S + S    ++ E++CK++ +  +    +E++L
Sbjct: 93  SSGSSNVSDGCDEEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVL 152

Query: 127 DGASIEVSPALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIESLGKIKQFN 186
           D   +++S  L+VEVL++  +A   A  FF WA +++GF H + +YNS++  L K +QF 
Sbjct: 153 DEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFE 212

Query: 187 VIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLID 243
            + +++ +M  KG+L+ ETF +  + +A A++ K+A+  FE M+K+ F++G+   N L+D
Sbjct: 213 TMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLD 272

[Close]

BLAST of Carg26044 vs. TAIR10
Match: AT3G62470.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 102.4 bits (254), Expect = 8.8e-22
Identity = 58/181 (32.04%), Postives = 110/181 (60.77%), Query Frame = 0


Query: 67  SYASHHFSDHGTEHSKQDSDADE---ISIMASVEIAQDAEKICKLLTK--SPSSCIESLL 126
           S  S + SD   E  + + D DE   +S + S    ++ E++CK++ +  +    +E++L
Sbjct: 93  SSGSSNVSDGCDEEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVL 152

Query: 127 DGASIEVSPALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIESLGKIKQFN 186
           D   +++S  L+VEVL++  +A   A  FF WA +++GF H + +YNS++  L K +QF 
Sbjct: 153 DEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFE 212

Query: 187 VIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLID 243
            + +++ +M  KG+L+ ETF +  + +A A++ K+A+  FE M+K+ F++G+   N L+D
Sbjct: 213 TMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLD 272

[Close]

BLAST of Carg26044 vs. TAIR10
Match: AT5G14820.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-21
Identity = 67/215 (31.16%), Postives = 122/215 (56.74%), Query Frame = 0


Query: 33  SRSVSRSPAITRNQTPICTSFRCNDHSTGVIPNRSYASHHFSDHGTEHSKQDSDADE--- 92
           SR +  S      Q P+  S +  D S G     S  S + SD   E  + + D DE   
Sbjct: 59  SRMIHSSTYHPYRQIPLPHSVQLLDASLG-CRGFSSGSSNVSDGCDEEVESECDNDEETG 118

Query: 93  ISIMASVEIAQDAEKICKLLTK--SPSSCIESLLDGASIEVSPALVVEVLKKMSNAGLLA 152
           +S + S    ++ E++CK++ +  +    +E++LD   +++S  L+VEVL++  +A   A
Sbjct: 119 VSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPA 178

Query: 153 LSFFRWAEKQKGFKHTTESYNSLIESLGKIKQFNVIWNLVNDMKRKGILSRETFALISRR 212
             FF WA +++GF H + +YNS++  L K +QF  + +++ +M  KG+L+ ETF +  + 
Sbjct: 179 FRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKA 238

Query: 213 YARARKVKEAIEAFEKMEKFGFQLGISDFNRLIDT 243
           +A A++ K+A+  FE M+K+ F++G+   N L+D+
Sbjct: 239 FAAAKERKKAVGIFELMKKYKFKIGVETINCLLDS 272

[Close]

BLAST of Carg26044 vs. Swiss-Prot
Match: sp|Q9C9A2|PP112_ARATH (Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g71060 PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 7.8e-52
Identity = 110/175 (62.86%), Postives = 137/175 (78.29%), Query Frame = 0


Query: 68  YASHHFSDHGTEHSKQDSDADEISIMASVEIAQDAEKICKLLTKSPSSCIESLLDGASIE 127
           Y S H S   T+ S  D+             +QDAE+ICK+LTK   S +E+LL+ AS++
Sbjct: 45  YGSFHASSVETQVSANDA-------------SQDAERICKILTKFTDSKVETLLNEASVK 104

Query: 128 VSPALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIESLGKIKQFNVIWNLV 187
           +SPAL+ EVLKK+SNAG+LALS F+WAE QKGFKHTT +YN+LIESLGKIKQF +IW+LV
Sbjct: 105 LSPALIEEVLKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLV 164

Query: 188 NDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLIDT 243
           +DMK K +LS+ETFALISRRYARARKVKEAI AF KME+FGF++  SDFNR++DT
Sbjct: 165 DDMKAKKLLSKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDT 206

[Close]

BLAST of Carg26044 vs. Swiss-Prot
Match: sp|Q9FVX2|PP129_ARATH (Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g77360 PE=2 SV=2)

HSP 1 Score: 125.9 bits (315), Expect = 1.3e-27
Identity = 61/144 (42.36%), Postives = 98/144 (68.06%), Query Frame = 0


Query: 97  EIAQDAEKICKLLTKSPSSCIESLLDGASIEVSPALVVEVLKKMSNAGLLALSFFRWAEK 156
           ++A  A+ I K+L  SP   ++S LD + + VS  +V +VL +  NAGLL   FF+W+EK
Sbjct: 67  DVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEK 126

Query: 157 QKGFKHTTESYNSLIESLGKIKQFNVIWNLVNDMKRKGILSRETFALISRRYARARKVKE 216
           Q+ ++H+  +Y+ +IES  KI+Q+ ++W+L+N M++K +L+ ETF ++ R+YARA+KV E
Sbjct: 127 QRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQKVDE 186

Query: 217 AIEAFEKMEKFGFQLGISDFNRLI 241
           AI AF  MEK+     +  FN L+
Sbjct: 187 AIYAFNVMEKYDLPPNLVAFNGLL 210

[Close]

BLAST of Carg26044 vs. Swiss-Prot
Match: sp|Q3EAF8|PP294_ARATH (Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g62540 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-20
Identity = 58/181 (32.04%), Postives = 110/181 (60.77%), Query Frame = 0


Query: 67  SYASHHFSDHGTEHSKQDSDADE---ISIMASVEIAQDAEKICKLLTK--SPSSCIESLL 126
           S  S + SD   E  + + D DE   +S + S    ++ E++CK++ +  +    +E++L
Sbjct: 93  SSGSSNVSDGCDEEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVL 152

Query: 127 DGASIEVSPALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIESLGKIKQFN 186
           D   +++S  L+VEVL++  +A   A  FF WA +++GF H + +YNS++  L K +QF 
Sbjct: 153 DEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFE 212

Query: 187 VIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLID 243
            + +++ +M  KG+L+ ETF +  + +A A++ K+A+  FE M+K+ F++G+   N L+D
Sbjct: 213 TMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLD 272

[Close]

BLAST of Carg26044 vs. Swiss-Prot
Match: sp|Q9LZP3|PP293_ARATH (Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g62470 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.6e-20
Identity = 58/181 (32.04%), Postives = 110/181 (60.77%), Query Frame = 0


Query: 67  SYASHHFSDHGTEHSKQDSDADE---ISIMASVEIAQDAEKICKLLTK--SPSSCIESLL 126
           S  S + SD   E  + + D DE   +S + S    ++ E++CK++ +  +    +E++L
Sbjct: 93  SSGSSNVSDGCDEEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVL 152

Query: 127 DGASIEVSPALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIESLGKIKQFN 186
           D   +++S  L+VEVL++  +A   A  FF WA +++GF H + +YNS++  L K +QF 
Sbjct: 153 DEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFE 212

Query: 187 VIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLID 243
            + +++ +M  KG+L+ ETF +  + +A A++ K+A+  FE M+K+ F++G+   N L+D
Sbjct: 213 TMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLD 272

[Close]

BLAST of Carg26044 vs. Swiss-Prot
Match: sp|Q9LEQ7|PP382_ARATH (Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g14820 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.1e-20
Identity = 67/215 (31.16%), Postives = 122/215 (56.74%), Query Frame = 0


Query: 33  SRSVSRSPAITRNQTPICTSFRCNDHSTGVIPNRSYASHHFSDHGTEHSKQDSDADE--- 92
           SR +  S      Q P+  S +  D S G     S  S + SD   E  + + D DE   
Sbjct: 59  SRMIHSSTYHPYRQIPLPHSVQLLDASLG-CRGFSSGSSNVSDGCDEEVESECDNDEETG 118

Query: 93  ISIMASVEIAQDAEKICKLLTK--SPSSCIESLLDGASIEVSPALVVEVLKKMSNAGLLA 152
           +S + S    ++ E++CK++ +  +    +E++LD   +++S  L+VEVL++  +A   A
Sbjct: 119 VSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPA 178

Query: 153 LSFFRWAEKQKGFKHTTESYNSLIESLGKIKQFNVIWNLVNDMKRKGILSRETFALISRR 212
             FF WA +++GF H + +YNS++  L K +QF  + +++ +M  KG+L+ ETF +  + 
Sbjct: 179 FRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKA 238

Query: 213 YARARKVKEAIEAFEKMEKFGFQLGISDFNRLIDT 243
           +A A++ K+A+  FE M+K+ F++G+   N L+D+
Sbjct: 239 FAAAKERKKAVGIFELMKKYKFKIGVETINCLLDS 272

[Close]

BLAST of Carg26044 vs. TrEMBL
Match: tr|A0A0A0KUY5|A0A0A0KUY5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571490 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 7.8e-89
Identity = 180/242 (74.38%), Postives = 205/242 (84.71%), Query Frame = 0


Query: 1   MGFRQSLSSLRRLPRRTSSFHSLRSSSYTTGSSRSVSRSPAITRNQTPICTSFRCNDHST 60
           MGFRQSLSSL+RL  RTSSF           S+RSVS S  IT+NQT IC S  CN+HST
Sbjct: 1   MGFRQSLSSLQRLFPRTSSFQ--------YASARSVSCSKTITKNQTSICISSHCNEHST 60

Query: 61  GVIPNRSYASHHFSDHGTEHSKQDSDADEISIMASVEIAQDAEKICKLLTKSPSSCIESL 120
            +IPNR+Y SH  + H  EHSKQD  A + SI+ S EIAQDAEK CKL++K+P+SCIESL
Sbjct: 61  LLIPNRNYTSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESL 120

Query: 121 LDGASIEVSPALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIESLGKIKQF 180
           LDGA +E+SPAL+VEVLKK+SNAG LALSFFRWAEKQKGFKHTTESYN LIE+LGKIKQF
Sbjct: 121 LDGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQF 180

Query: 181 NVIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLI 240
           NVIWNLV+DMKRKGILSRETFALI+RRYARARKVKEA+E+FEKMEKFGFQ+G+SDFNRL+
Sbjct: 181 NVIWNLVSDMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLL 234

Query: 241 DT 243
           DT
Sbjct: 241 DT 234

[Close]

BLAST of Carg26044 vs. TrEMBL
Match: tr|A0A1S3CT11|A0A1S3CT11_CUCME (pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103504569 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.7e-88
Identity = 181/242 (74.79%), Postives = 203/242 (83.88%), Query Frame = 0


Query: 1   MGFRQSLSSLRRLPRRTSSFHSLRSSSYTTGSSRSVSRSPAITRNQTPICTSFRCNDHST 60
           MGFR+SLSSL+RL  RTSSF           S+RS S S  ITRNQT IC S RCN+HST
Sbjct: 1   MGFRRSLSSLQRLFPRTSSFQ--------YASARSFSCSKTITRNQTSICISSRCNEHST 60

Query: 61  GVIPNRSYASHHFSDHGTEHSKQDSDADEISIMASVEIAQDAEKICKLLTKSPSSCIESL 120
             I NR+Y S H + HG EHSKQD +A + SIM S EI QDAEK CKL++K+P+SCIESL
Sbjct: 61  WPILNRNYTSQHSTHHGNEHSKQDLEAGQKSIMESDEITQDAEKFCKLISKNPNSCIESL 120

Query: 121 LDGASIEVSPALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIESLGKIKQF 180
           LDGA++E+SPAL+ EVLKK+ NAG LALSFFRWAEKQKGFKHTTESYN LIE+LGKIKQF
Sbjct: 121 LDGAALELSPALIEEVLKKLCNAGFLALSFFRWAEKQKGFKHTTESYNCLIEALGKIKQF 180

Query: 181 NVIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLI 240
           NVIWNLV+DMKRKGILSRETFALI+RRYARARKVKEAIE+FEKMEKFGFQLG+SDFNRLI
Sbjct: 181 NVIWNLVSDMKRKGILSRETFALITRRYARARKVKEAIESFEKMEKFGFQLGVSDFNRLI 234

Query: 241 DT 243
           DT
Sbjct: 241 DT 234

[Close]

BLAST of Carg26044 vs. TrEMBL
Match: tr|A0A2C9UF74|A0A2C9UF74_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G126300 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 3.6e-54
Identity = 121/189 (64.02%), Postives = 149/189 (78.84%), Query Frame = 0


Query: 56  NDHSTGVIPNRSYASHHFSDHGTEHSKQ--DSDADEISIMASVEIAQDAEKICKLLTKSP 115
           N H+        Y   H S H      Q   ++ D+   + + +I +D EKIC+LL+K+P
Sbjct: 43  NSHNLSTPLLNPYFIFHRSIHANLEQSQVLINNDDQNPEILTCKIIEDTEKICRLLSKNP 102

Query: 116 SSCIESLLDGASIEVSPALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIES 175
           +  I+SLLD ASIEVSPALV+EVLK++SNAG+LALSFFRWAEKQKGF ++TESYN+LIES
Sbjct: 103 TPGIQSLLDKASIEVSPALVLEVLKRLSNAGVLALSFFRWAEKQKGFVYSTESYNALIES 162

Query: 176 LGKIKQFNVIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGI 235
           LGKIKQFN++WNLV+DMKRK +L +ETFALISRRYARARKVKEAI+AFEKMEKFG ++  
Sbjct: 163 LGKIKQFNMMWNLVSDMKRKKLLCKETFALISRRYARARKVKEAIDAFEKMEKFGLKIEP 222

Query: 236 SDFNRLIDT 243
           SDFNRLIDT
Sbjct: 223 SDFNRLIDT 231

[Close]

BLAST of Carg26044 vs. TrEMBL
Match: tr|A0A251R6F8|A0A251R6F8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G322900 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 1.8e-53
Identity = 135/231 (58.44%), Postives = 169/231 (73.16%), Query Frame = 0


Query: 20  FHSLRSS-SYTTGSSRSVSRS------PAITRNQTPICTSFRCNDHSTGVIPNRSYASHH 79
           F +LRS+ +  TGS RS + S         TRN+T         ++ +G + NR+   + 
Sbjct: 24  FPNLRSTPTSQTGSHRSFTTSLQSIKYTNFTRNRT------LHTENPSGFLSNRTGGFYR 83

Query: 80  FSDHGTEHSK-QDSDADEISIMASVEIAQDAEKICKLLTKSPS-SCIESLLDGASIEVSP 139
               G   ++  D  +D+I    + EI +DAE+IC++L+ S S S I+S LDGAS+EVSP
Sbjct: 84  AIHDGLGKTQVPDEASDKIPGANNREITEDAERICRILSTSNSKSPIDSFLDGASVEVSP 143

Query: 140 ALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIESLGKIKQFNVIWNLVNDM 199
           ALVVEVLKK+SNAG+LALSFFRWAEKQKGFKHT ESYN+LIE+LGKIKQF +IW LVNDM
Sbjct: 144 ALVVEVLKKLSNAGVLALSFFRWAEKQKGFKHTMESYNALIEALGKIKQFKMIWELVNDM 203

Query: 200 KRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLID 242
           K KG+LS+ETFALISRRY+RA+KVKEAIE FEKMEKFG ++  SDFNRLID
Sbjct: 204 KSKGLLSKETFALISRRYSRAKKVKEAIETFEKMEKFGMKVEGSDFNRLID 248

[Close]

BLAST of Carg26044 vs. TrEMBL
Match: tr|A0A2P6R3D9|A0A2P6R3D9_ROSCH (Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0440971 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 6.9e-53
Identity = 129/214 (60.28%), Postives = 155/214 (72.43%), Query Frame = 0


Query: 30  TGSSRSVSRSPAITRNQTPICTSFRCNDHSTGVIPNRSYASHHFSDHGTEHSKQDSDADE 89
           TGS RSV     +T N  P        +H +G++ N +   +  + HGT +  Q  D   
Sbjct: 26  TGSPRSVRSLTNLTSNPNPYV------EHPSGLLRNPNPGIYR-AIHGTLYKTQVLDEAN 85

Query: 90  ISIMASVEIAQDAEKICKLL-TKSPSSCIESLLDGASIEVSPALVVEVLKKMSNAGLLAL 149
                + +I Q+AEKI K+L T + +  IESLLDGAS++VSP LVVEVLKK++NAG LAL
Sbjct: 86  -----THDITQEAEKISKILSTANSNPRIESLLDGASVKVSPTLVVEVLKKLNNAGALAL 145

Query: 150 SFFRWAEKQKGFKHTTESYNSLIESLGKIKQFNVIWNLVNDMKRKGILSRETFALISRRY 209
           SFFRWAEKQKGFKH TESYN+LIE+LGKIKQF +IW LVNDM  KG+LS+ETFALISRRY
Sbjct: 146 SFFRWAEKQKGFKHCTESYNALIEALGKIKQFKIIWELVNDMNNKGLLSKETFALISRRY 205

Query: 210 ARARKVKEAIEAFEKMEKFGFQLGISDFNRLIDT 243
           ARARKV E I+AFEKMEKFG +L  SDFNRLIDT
Sbjct: 206 ARARKVSEGIKAFEKMEKFGIKLEGSDFNRLIDT 227

The following BLAST results are available for this feature:

BLAST of Carg26044 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022989978.1	1.0e-124	98.09	pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucurbita ...	[more]
XP_023539133.1	4.0e-121	97.88	pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucurbita ...	[more]
XP_022960260.1	2.6e-120	97.46	pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucurbita ...	[more]
XP_004150483.1	1.2e-88	74.38	PREDICTED: pentatricopeptide repeat-containing protein At1g71060, mitochondrial ...	[more]
XP_008467144.1	2.6e-88	74.79	PREDICTED: pentatricopeptide repeat-containing protein At1g71060, mitochondrial ...	[more]

BLAST of Carg26044 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G71060.1	4.3e-53	62.86	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G77360.1	7.5e-29	42.36	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G62540.1	6.8e-22	32.04	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G62470.1	8.8e-22	32.04	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G14820.1	1.2e-21	31.16	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Carg26044 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C9A2\|PP112_ARATH	7.8e-52	62.86	Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidop...	[more]
sp\|Q9FVX2\|PP129_ARATH	1.3e-27	42.36	Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidop...	[more]
sp\|Q3EAF8\|PP294_ARATH	1.2e-20	32.04	Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidop...	[more]
sp\|Q9LZP3\|PP293_ARATH	1.6e-20	32.04	Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidop...	[more]
sp\|Q9LEQ7\|PP382_ARATH	2.1e-20	31.16	Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidop...	[more]

BLAST of Carg26044 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KUY5\|A0A0A0KUY5_CUCSA	7.8e-89	74.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571490 PE=4 SV=1	[more]
tr\|A0A1S3CT11\|A0A1S3CT11_CUCME	1.7e-88	74.79	pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Cucumis ...	[more]
tr\|A0A2C9UF74\|A0A2C9UF74_MANES	3.6e-54	64.02	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G126300 PE=4 SV=...	[more]
tr\|A0A251R6F8\|A0A251R6F8_PRUPE	1.8e-53	58.44	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G322900 PE=4 SV=1	[more]
tr\|A0A2P6R3D9\|A0A2P6R3D9_ROSCH	6.9e-53	60.28	Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinen...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26044-RA	Carg26044-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 410..442 e-value: 3.6E-6 score: 24.8 coord: 446..477 e-value: 8.7E-7 score: 26.7 coord: 236..268 e-value: 1.7E-4 score: 19.5 coord: 340..371 e-value: 2.2E-5 score: 22.3 coord: 481..512 e-value: 2.9E-7 score: 28.2 coord: 166..195 e-value: 1.4E-4 score: 19.8 coord: 270..303 e-value: 7.1E-5 score: 20.7 coord: 375..407 e-value: 0.0023 score: 16.0 coord: 304..337 e-value: 6.5E-9 score: 33.4
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 236..277 e-value: 3.9E-9 score: 36.4 coord: 375..419 e-value: 1.7E-10 score: 40.8 coord: 446..491 e-value: 1.8E-9 score: 37.5 coord: 301..348 e-value: 9.9E-15 score: 54.4
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 208..229 e-value: 0.0098 score: 16.0 coord: 166..195 e-value: 0.011 score: 15.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 163..193 score: 7.87
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 513..547 score: 5.799
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 232..266 score: 9.734
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 478..512 score: 10.698
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 337..371 score: 10.38
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 443..477 score: 11.268
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 267..301 score: 10.139
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 197..231 score: 9.514
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 372..406 score: 9.953
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 407..442 score: 9.986
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 302..336 score: 12.858
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 350..436 e-value: 2.1E-19 score: 71.6 coord: 231..349 e-value: 7.8E-33 score: 115.3 coord: 95..230 e-value: 5.6E-18 score: 66.9
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 437..547 e-value: 4.7E-22 score: 80.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..86
None	No IPR available	PANTHER	PTHR24015:SF261	SUBFAMILY NOT NAMED	coord: 60..548
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 60..548

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26044	Cla003917	Watermelon (97103) v1	carwmB0423
Carg26044	Csa5G571490	Cucumber (Chinese Long) v2	carcuB0461
Carg26044	ClCG01G006140	Watermelon (Charleston Gray)	carwcgB0419
Carg26044	CSPI05G19690	Wild cucumber (PI 183967)	carcpiB0465
Carg26044	Cucsa.280460	Cucumber (Gy14) v1	carcgyB0495
Carg26044	CmaCh04G020950	Cucurbita maxima (Rimu)	carcmaB0595
Carg26044	CmoCh04G021980	Cucurbita moschata (Rifu)	carcmoB0580
Carg26044	Lsi09G006500	Bottle gourd (USVL1VR-Ls)	carlsiB387
Carg26044	CsGy5G019180	Cucumber (Gy14) v2	carcgybB0437
Carg26044	CsaV3_5G028520	Cucumber (Chinese Long) v3	carcucB0461
Carg26044	Cla97C01G006440	Watermelon (97103) v2	carwmbB0450
Carg26044	Bhi12G000771	Wax gourd	carwgoB0512

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26044	Silver-seed gourd	carcarB229
Carg26044	Cucurbita maxima (Rimu)	carcmaB0593
Carg26044	Cucurbita moschata (Rifu)	carcmoB0578
Carg26044	Cucurbita pepo (Zucchini)	carcpeB0600
Carg26044	Melon (DHL92) v3.5.1	carmeB0436
Carg26044	Melon (DHL92) v3.6.1	carmedB0438