Cla97C01G006440 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G006440
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Pentatricopeptide repeat-containing protein, putative
Location	Cla97Chr01 : 6401662 .. 6403311 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTTTGTCGATCCCTCAGTTCCCTCCGAAGATTATCTCAAAGAACAAGCTGTTTCCACTCGCTTCCATCTTCTTCTCACTCTGCTTCAGCTAGATCAGTTTCTTGTTCAAAAACAATCTCTACAAATCAAACTTCAATCTGCATTTCATCTCCTTGCAATGAGCATTCAACTGGGCTCATTTCAAATCGCAATTATGCCTCTCACCATTTCACCGATCATGGTACATACCATAGGAAGCAGGATACGGAGGCCAACCAAAATTCTACTATGGGAAGTGTTGAAATCGCCCAGAATGCTGAAAAGTTCTGTAAGTTAATATCAAAAAACCCTAATTCTTGCATTGAATCATTGCTTGATGGTGTTCCAATGGAGGTGTCGCCGGCTGTGGTTGTGGAGGTGCTGAAGAAGCTGAGTAATGCGGGGTTTCTCGCACTTTCGTTCTTCAGATGGGCAGAGAAGCAGCAAGGCTTCAAACATACTACGGAGAGCTATAACTGGTTAATCGAATCCTTGGGTAAGATCAAACAGTTTAATGTGATTTGGAATTTGGTGAGTGATATGAAACGCAAAGGAATTTTAAGTAGAGAAACATTTGCTTTGATTTCTCGAAGATATGCCCGAGCTAGAAAGGTTAAGGAAGCAATCGAGTCATTTGAGAAGATGGAGAAGTTTGGATTTCAAGTGGGAGTATCAGATTTCAATAGACTAATTGACACTCTGTGCAAATCCAGAAACGTTTTGAAAGCACAAGAGGTGTTTGATAAAATGAAGCACAGTAGGTTCAAGCCTGATATCAAGTCATACACAATTCTTTTAGAAGGGTGGGGTCAGGATCAGAATTTGTTGAGGTTGAATGAGGTTTATAGGGAGATGAGAGACAACGGATTCGAACCCGATGTCGTTACTTTCGGTATAGTTATCAATGCACATTGCAAGGTAAAGAAGTATGATGAAGCAATTCGGTTGTTTCACGAAATGAAAGCGAAGAATGTGAAGCCATCACCTCATGTGTTCTGTACCTTAATCAATGGTTTGGGTTCTGAGAAGAGATTGAGCGAGGCTCTAGAGTTTTTCGAACAGTTGAAGCTTAGTGGCTTTGCTCCAGAGGCACCGACTTATAATGCTGTTGTGGCGGCTTACTGCTGGTCAATGAAGATGGCTGATGCATATAGGATGGTAAATGAGATGAGGAAATTTGGCATCGGTCCGAATTCGAGGACTTACGACATCATATTACATCACTTGATAAAGGGTAGGAGATCAAAGCAAGCTTATTCTGTTTTCCAAAGAATGAGTAGCGAGCCGGGGTGTGAACCAACTGTTAGTACATACGAGATTATGGTGAGAATGTTTTGCAACGAAGAACGATTGGATATGGCAATTCAGATTTGGGATGAAATGAAGGCTAAAGGAGTTCTTCCGGGAATGCACATGTTCTCGACGTTGATTAATAGCTTATGCTATGAGAATAAGTTAGAGGATGCTTGCAAATACTTTCAAGAGATGTTGGATGTAGGTATTCGGCCACCAGCAGCTATGTTTAGCAATTTGAAACAGGCTCTTCTTGATGAGGGCAGAGAGGACACTGCTTTACTTCTGGCAGAGAAGATCGAGAAACTCCGAAAGGTGCCATTGCTCGGTTGA

mRNA sequence

ATGGGTTTTTGTCGATCCCTCAGTTCCCTCCGAAGATTATCTCAAAGAACAAGCTGTTTCCACTCGCTTCCATCTTCTTCTCACTCTGCTTCAGCTAGATCAGTTTCTTGTTCAAAAACAATCTCTACAAATCAAACTTCAATCTGCATTTCATCTCCTTGCAATGAGCATTCAACTGGGCTCATTTCAAATCGCAATTATGCCTCTCACCATTTCACCGATCATGGTACATACCATAGGAAGCAGGATACGGAGGCCAACCAAAATTCTACTATGGGAAGTGTTGAAATCGCCCAGAATGCTGAAAAGTTCTGTAAGTTAATATCAAAAAACCCTAATTCTTGCATTGAATCATTGCTTGATGGTGTTCCAATGGAGGTGTCGCCGGCTGTGGTTGTGGAGGTGCTGAAGAAGCTGAGTAATGCGGGGTTTCTCGCACTTTCGTTCTTCAGATGGGCAGAGAAGCAGCAAGGCTTCAAACATACTACGGAGAGCTATAACTGGTTAATCGAATCCTTGGGTAAGATCAAACAGTTTAATGTGATTTGGAATTTGGTGAGTGATATGAAACGCAAAGGAATTTTAAGTAGAGAAACATTTGCTTTGATTTCTCGAAGATATGCCCGAGCTAGAAAGGTTAAGGAAGCAATCGAGTCATTTGAGAAGATGGAGAAGTTTGGATTTCAAGTGGGAGTATCAGATTTCAATAGACTAATTGACACTCTGTGCAAATCCAGAAACGTTTTGAAAGCACAAGAGGTGTTTGATAAAATGAAGCACAGTAGGTTCAAGCCTGATATCAAGTCATACACAATTCTTTTAGAAGGGTGGGGTCAGGATCAGAATTTGTTGAGGTTGAATGAGGTTTATAGGGAGATGAGAGACAACGGATTCGAACCCGATGTCGTTACTTTCGGTATAGTTATCAATGCACATTGCAAGGTAAAGAAGTATGATGAAGCAATTCGGTTGTTTCACGAAATGAAAGCGAAGAATGTGAAGCCATCACCTCATGTGTTCTGTACCTTAATCAATGGTTTGGGTTCTGAGAAGAGATTGAGCGAGGCTCTAGAGTTTTTCGAACAGTTGAAGCTTAGTGGCTTTGCTCCAGAGGCACCGACTTATAATGCTGTTGTGGCGGCTTACTGCTGGTCAATGAAGATGGCTGATGCATATAGGATGGTAAATGAGATGAGGAAATTTGGCATCGGTCCGAATTCGAGGACTTACGACATCATATTACATCACTTGATAAAGGGTAGGAGATCAAAGCAAGCTTATTCTGTTTTCCAAAGAATGAGTAGCGAGCCGGGGTGTGAACCAACTGTTAGTACATACGAGATTATGGTGAGAATGTTTTGCAACGAAGAACGATTGGATATGGCAATTCAGATTTGGGATGAAATGAAGGCTAAAGGAGTTCTTCCGGGAATGCACATGTTCTCGACGTTGATTAATAGCTTATGCTATGAGAATAAGTTAGAGGATGCTTGCAAATACTTTCAAGAGATGTTGGATGTAGGTATTCGGCCACCAGCAGCTATGTTTAGCAATTTGAAACAGGCTCTTCTTGATGAGGGCAGAGAGGACACTGCTTTACTTCTGGCAGAGAAGATCGAGAAACTCCGAAAGGTGCCATTGCTCGGTTGA

Coding sequence (CDS)

ATGGGTTTTTGTCGATCCCTCAGTTCCCTCCGAAGATTATCTCAAAGAACAAGCTGTTTCCACTCGCTTCCATCTTCTTCTCACTCTGCTTCAGCTAGATCAGTTTCTTGTTCAAAAACAATCTCTACAAATCAAACTTCAATCTGCATTTCATCTCCTTGCAATGAGCATTCAACTGGGCTCATTTCAAATCGCAATTATGCCTCTCACCATTTCACCGATCATGGTACATACCATAGGAAGCAGGATACGGAGGCCAACCAAAATTCTACTATGGGAAGTGTTGAAATCGCCCAGAATGCTGAAAAGTTCTGTAAGTTAATATCAAAAAACCCTAATTCTTGCATTGAATCATTGCTTGATGGTGTTCCAATGGAGGTGTCGCCGGCTGTGGTTGTGGAGGTGCTGAAGAAGCTGAGTAATGCGGGGTTTCTCGCACTTTCGTTCTTCAGATGGGCAGAGAAGCAGCAAGGCTTCAAACATACTACGGAGAGCTATAACTGGTTAATCGAATCCTTGGGTAAGATCAAACAGTTTAATGTGATTTGGAATTTGGTGAGTGATATGAAACGCAAAGGAATTTTAAGTAGAGAAACATTTGCTTTGATTTCTCGAAGATATGCCCGAGCTAGAAAGGTTAAGGAAGCAATCGAGTCATTTGAGAAGATGGAGAAGTTTGGATTTCAAGTGGGAGTATCAGATTTCAATAGACTAATTGACACTCTGTGCAAATCCAGAAACGTTTTGAAAGCACAAGAGGTGTTTGATAAAATGAAGCACAGTAGGTTCAAGCCTGATATCAAGTCATACACAATTCTTTTAGAAGGGTGGGGTCAGGATCAGAATTTGTTGAGGTTGAATGAGGTTTATAGGGAGATGAGAGACAACGGATTCGAACCCGATGTCGTTACTTTCGGTATAGTTATCAATGCACATTGCAAGGTAAAGAAGTATGATGAAGCAATTCGGTTGTTTCACGAAATGAAAGCGAAGAATGTGAAGCCATCACCTCATGTGTTCTGTACCTTAATCAATGGTTTGGGTTCTGAGAAGAGATTGAGCGAGGCTCTAGAGTTTTTCGAACAGTTGAAGCTTAGTGGCTTTGCTCCAGAGGCACCGACTTATAATGCTGTTGTGGCGGCTTACTGCTGGTCAATGAAGATGGCTGATGCATATAGGATGGTAAATGAGATGAGGAAATTTGGCATCGGTCCGAATTCGAGGACTTACGACATCATATTACATCACTTGATAAAGGGTAGGAGATCAAAGCAAGCTTATTCTGTTTTCCAAAGAATGAGTAGCGAGCCGGGGTGTGAACCAACTGTTAGTACATACGAGATTATGGTGAGAATGTTTTGCAACGAAGAACGATTGGATATGGCAATTCAGATTTGGGATGAAATGAAGGCTAAAGGAGTTCTTCCGGGAATGCACATGTTCTCGACGTTGATTAATAGCTTATGCTATGAGAATAAGTTAGAGGATGCTTGCAAATACTTTCAAGAGATGTTGGATGTAGGTATTCGGCCACCAGCAGCTATGTTTAGCAATTTGAAACAGGCTCTTCTTGATGAGGGCAGAGAGGACACTGCTTTACTTCTGGCAGAGAAGATCGAGAAACTCCGAAAGGTGCCATTGCTCGGTTGA

Protein sequence

MGFCRSLSSLRRLSQRTSCFHSLPSSSHSASARSVSCSKTISTNQTSICISSPCNEHSTGLISNRNYASHHFTDHGTYHRKQDTEANQNSTMGSVEIAQNAEKFCKLISKNPNSCIESLLDGVPMEVSPAVVVEVLKKLSNAGFLALSFFRWAEKQQGFKHTTESYNWLIESLGKIKQFNVIWNLVSDMKRKGILSRETFALISRRYARARKVKEAIESFEKMEKFGFQVGVSDFNRLIDTLCKSRNVLKAQEVFDKMKHSRFKPDIKSYTILLEGWGQDQNLLRLNEVYREMRDNGFEPDVVTFGIVINAHCKVKKYDEAIRLFHEMKAKNVKPSPHVFCTLINGLGSEKRLSEALEFFEQLKLSGFAPEAPTYNAVVAAYCWSMKMADAYRMVNEMRKFGIGPNSRTYDIILHHLIKGRRSKQAYSVFQRMSSEPGCEPTVSTYEIMVRMFCNEERLDMAIQIWDEMKAKGVLPGMHMFSTLINSLCYENKLEDACKYFQEMLDVGIRPPAAMFSNLKQALLDEGREDTALLLAEKIEKLRKVPLLG

Homology

[Close]

BLAST of Cla97C01G006440 vs. NCBI nr
Match: XP_023539133.1 (pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 365.9 bits (938), Expect = 2.4e-97
Identity = 410/471 (87.05%), Postives = 442/471 (93.84%), Query Frame = 0


Query: 1   MGFCRSLSSLRRLSQRTSCFHSLPSSSHSASARSVSCSKTISTNQTSICISSPCNEHSTG 60
           MGF + LSSLR LS+R S FHSLPSSS++ S+RSVS S  I+ NQT IC SS CN+HSTG
Sbjct: 1   MGFRQFLSSLRGLSRRISSFHSLPSSSYTCSSRSVSRSPAITRNQTPICTSSRCNDHSTG 60

Query: 61  LISNRNYASHHFTDHGTYHRKQDTEANQNSTMGSVEIAQNAEKFCKLISKNPNSCIESLL 120
           +I NR+YASHHF+DHGT H KQD++A++ S M S EIAQ+AEK CKL++KNP+SCIESLL
Sbjct: 61  VIPNRSYASHHFSDHGTEHSKQDSDADEISIMASAEIAQDAEKICKLLTKNPSSCIESLL 120

Query: 121 DGVPMEVSPAVVVEVLKKLSNAGFLALSFFRWAEKQQGFKHTTESYNWLIESLGKIKQFN 180
           DG  +EVSPA+VVEVLKK+SNAG LALSFFRWAEKQ+GFKHTTESYN LIESLGKIKQFN
Sbjct: 121 DGASIEVSPALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIESLGKIKQFN 180

Query: 181 VIWNLVSDMKRKGILSRETFALISRRYARARKVKEAIESFEKMEKFGFQVGVSDFNRLID 240
           VIWNLV+DMKRKGILSRETFALISRRYARARKVKEAIE+FEKMEKFGFQ+G+SDFNRLID
Sbjct: 181 VIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLID 240

Query: 241 TLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           T XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXFQRMSSEPGCEPTVSTYEIMVRMFCNEERLDMAIQIWDEMKA 472
           XXXXXXXXXF+RMS EPGCEP +STYEIMVRM CN+ER+DMAI+IWD+MKA
Sbjct: 421 XXXXXXXXXFERMSREPGCEPALSTYEIMVRMLCNKERVDMAIRIWDQMKA 471

[Close]

BLAST of Cla97C01G006440 vs. NCBI nr
Match: XP_022989978.1 (pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucurbita maxima])

HSP 1 Score: 362.8 bits (930), Expect = 2.0e-96
Identity = 411/472 (87.08%), Postives = 444/472 (94.07%), Query Frame = 0


Query: 1   MGFCRSLSSLRRLSQRTSCFHSLPSSSH-SASARSVSCSKTISTNQTSICISSPCNEHST 60
           MGF +SLSSLRRL +RTS FHSL SSS+ + S+RSVS S  I+ NQT IC SS CN+HST
Sbjct: 1   MGFRQSLSSLRRLPRRTSSFHSLRSSSYTTGSSRSVSRSPAITRNQTPICTSSRCNDHST 60

Query: 61  GLISNRNYASHHFTDHGTYHRKQDTEANQNSTMGSVEIAQNAEKFCKLISKNPNSCIESL 120
           G+I NR+YASHHF+DHGT H KQD+EA++ S + S EIAQ+AEK CKL++K+P+SCIESL
Sbjct: 61  GVIPNRSYASHHFSDHGTEHSKQDSEADEISIIASAEIAQDAEKICKLLTKSPSSCIESL 120

Query: 121 LDGVPMEVSPAVVVEVLKKLSNAGFLALSFFRWAEKQQGFKHTTESYNWLIESLGKIKQF 180
           LDG  +EVSPA+VVEVLKK+SNAGFLAL+FFRWAEKQ+GFKHTTESYN LIESLGKIKQF
Sbjct: 121 LDGASIEVSPALVVEVLKKMSNAGFLALAFFRWAEKQKGFKHTTESYNSLIESLGKIKQF 180

Query: 181 NVIWNLVSDMKRKGILSRETFALISRRYARARKVKEAIESFEKMEKFGFQVGVSDFNRLI 240
           NVIWNLV+DMKRKGILSRETFALISRRYARARKVKEAIE+FEKMEKFGFQ+G+SDFNRLI
Sbjct: 181 NVIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLI 240

Query: 241 DTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           DT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 DTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXFQRMSSEPGCEPTVSTYEIMVRMFCNEERLDMAIQIWDEMKA 472
           XXXXXXXXXX +RMS EPGCEPT+STYEIMVRM CN+ER+DMAIQIWD+MKA
Sbjct: 421 XXXXXXXXXXXERMSREPGCEPTLSTYEIMVRMLCNKERVDMAIQIWDQMKA 472

[Close]

BLAST of Cla97C01G006440 vs. NCBI nr
Match: XP_004150483.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucumis sativus] >KGN51506.1 hypothetical protein Csa_5G571490 [Cucumis sativus])

HSP 1 Score: 358.2 bits (918), Expect = 4.9e-95
Identity = 193/241 (80.08%), Postives = 209/241 (86.72%), Query Frame = 0


Query: 1   MGFCRSLSSLRRLSQRTSCFHSLPSSSHSASARSVSCSKTISTNQTSICISSPCNEHSTG 60
           MGF +SLSSL+RL  RTS F         ASARSVSCSKTI+ NQTSICISS CNEHST 
Sbjct: 1   MGFRQSLSSLQRLFPRTSSF-------QYASARSVSCSKTITKNQTSICISSHCNEHSTL 60

Query: 61  LISNRNYASHHFTDHGTYHRKQDTEANQNSTMGSVEIAQNAEKFCKLISKNPNSCIESLL 120
           LI NRNY SH  T H   H KQD +A+Q S + S EIAQ+AEKFCKLISKNPNSCIESLL
Sbjct: 61  LIPNRNYTSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLL 120

Query: 121 DGVPMEVSPAVVVEVLKKLSNAGFLALSFFRWAEKQQGFKHTTESYNWLIESLGKIKQFN 180
           DG PME+SPA++VEVLKKLSNAGFLALSFFRWAEKQ+GFKHTTESYN LIE+LGKIKQFN
Sbjct: 121 DGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFN 180

Query: 181 VIWNLVSDMKRKGILSRETFALISRRYARARKVKEAIESFEKMEKFGFQVGVSDFNRLID 240
           VIWNLVSDMKRKGILSRETFALI+RRYARARKVKEA+ESFEKMEKFGFQ+GVSDFNRL+D
Sbjct: 181 VIWNLVSDMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLD 234

Query: 241 T 242
           T
Sbjct: 241 T 234

[Close]

BLAST of Cla97C01G006440 vs. NCBI nr
Match: XP_022960260.1 (pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucurbita moschata])

HSP 1 Score: 357.8 bits (917), Expect = 6.4e-95
Identity = 189/242 (78.10%), Postives = 215/242 (88.84%), Query Frame = 0


Query: 1   MGFCRSLSSLRRLSQRTSCFHSLP-SSSHSASARSVSCSKTISTNQTSICISSPCNEHST 60
           MGF + LSSLR LS+RTS FHSLP SSS++ S RSVS S  I+ NQT IC SS CN+HS 
Sbjct: 1   MGFRQFLSSLRGLSRRTSSFHSLPSSSSYTGSFRSVSRSPAITRNQTPICTSSRCNDHSA 60

Query: 61  GLISNRNYASHHFTDHGTYHRKQDTEANQNSTMGSVEIAQNAEKFCKLISKNPNSCIESL 120
           G+I NR+YASHHF+DHGT H KQD++A++ S M S EIAQ+AEK CKL++K+P+SCIESL
Sbjct: 61  GVIPNRSYASHHFSDHGTEHSKQDSDADEISIMASAEIAQDAEKICKLLTKSPSSCIESL 120

Query: 121 LDGVPMEVSPAVVVEVLKKLSNAGFLALSFFRWAEKQQGFKHTTESYNWLIESLGKIKQF 180
           LDG  +EVSPA+VVEVLKK+SNAG LALSFFRWAEKQ+GFKHTTESYN LIESLGKIKQF
Sbjct: 121 LDGASIEVSPALVVEVLKKMSNAGLLALSFFRWAEKQKGFKHTTESYNSLIESLGKIKQF 180

Query: 181 NVIWNLVSDMKRKGILSRETFALISRRYARARKVKEAIESFEKMEKFGFQVGVSDFNRLI 240
           NVIWNLV+DMKRKGILSRETFALISRRYARARKVKEAIE+FEKMEKFGFQ+G+SDFNRLI
Sbjct: 181 NVIWNLVNDMKRKGILSRETFALISRRYARARKVKEAIEAFEKMEKFGFQLGISDFNRLI 240

Query: 241 DT 242
           DT
Sbjct: 241 DT 242

[Close]

BLAST of Cla97C01G006440 vs. NCBI nr
Match: XP_008467144.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucumis melo])

HSP 1 Score: 352.8 bits (904), Expect = 2.1e-93
Identity = 192/241 (79.67%), Postives = 203/241 (84.23%), Query Frame = 0


Query: 1   MGFCRSLSSLRRLSQRTSCFHSLPSSSHSASARSVSCSKTISTNQTSICISSPCNEHSTG 60
           MGF RSLSSL+RL  RTS F         ASARS SCSKTI+ NQTSICISS CNEHST 
Sbjct: 1   MGFRRSLSSLQRLFPRTSSF-------QYASARSFSCSKTITRNQTSICISSRCNEHSTW 60

Query: 61  LISNRNYASHHFTDHGTYHRKQDTEANQNSTMGSVEIAQNAEKFCKLISKNPNSCIESLL 120
            I NRNY S H T HG  H KQD EA Q S M S EI Q+AEKFCKLISKNPNSCIESLL
Sbjct: 61  PILNRNYTSQHSTHHGNEHSKQDLEAGQKSIMESDEITQDAEKFCKLISKNPNSCIESLL 120

Query: 121 DGVPMEVSPAVVVEVLKKLSNAGFLALSFFRWAEKQQGFKHTTESYNWLIESLGKIKQFN 180
           DG  +E+SPA++ EVLKKL NAGFLALSFFRWAEKQ+GFKHTTESYN LIE+LGKIKQFN
Sbjct: 121 DGAALELSPALIEEVLKKLCNAGFLALSFFRWAEKQKGFKHTTESYNCLIEALGKIKQFN 180

Query: 181 VIWNLVSDMKRKGILSRETFALISRRYARARKVKEAIESFEKMEKFGFQVGVSDFNRLID 240
           VIWNLVSDMKRKGILSRETFALI+RRYARARKVKEAIESFEKMEKFGFQ+GVSDFNRLID
Sbjct: 181 VIWNLVSDMKRKGILSRETFALITRRYARARKVKEAIESFEKMEKFGFQLGVSDFNRLID 234

Query: 241 T 242
           T
Sbjct: 241 T 234

[Close]

BLAST of Cla97C01G006440 vs. TrEMBL
Match: tr|A0A0A0KUY5|A0A0A0KUY5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571490 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 3.2e-95
Identity = 193/241 (80.08%), Postives = 209/241 (86.72%), Query Frame = 0


Query: 1   MGFCRSLSSLRRLSQRTSCFHSLPSSSHSASARSVSCSKTISTNQTSICISSPCNEHSTG 60
           MGF +SLSSL+RL  RTS F         ASARSVSCSKTI+ NQTSICISS CNEHST 
Sbjct: 1   MGFRQSLSSLQRLFPRTSSF-------QYASARSVSCSKTITKNQTSICISSHCNEHSTL 60

Query: 61  LISNRNYASHHFTDHGTYHRKQDTEANQNSTMGSVEIAQNAEKFCKLISKNPNSCIESLL 120
           LI NRNY SH  T H   H KQD +A+Q S + S EIAQ+AEKFCKLISKNPNSCIESLL
Sbjct: 61  LIPNRNYTSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLL 120

Query: 121 DGVPMEVSPAVVVEVLKKLSNAGFLALSFFRWAEKQQGFKHTTESYNWLIESLGKIKQFN 180
           DG PME+SPA++VEVLKKLSNAGFLALSFFRWAEKQ+GFKHTTESYN LIE+LGKIKQFN
Sbjct: 121 DGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFN 180

Query: 181 VIWNLVSDMKRKGILSRETFALISRRYARARKVKEAIESFEKMEKFGFQVGVSDFNRLID 240
           VIWNLVSDMKRKGILSRETFALI+RRYARARKVKEA+ESFEKMEKFGFQ+GVSDFNRL+D
Sbjct: 181 VIWNLVSDMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLD 234

Query: 241 T 242
           T
Sbjct: 241 T 234

[Close]

BLAST of Cla97C01G006440 vs. TrEMBL
Match: tr|A0A1S3CT11|A0A1S3CT11_CUCME (pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103504569 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.4e-93
Identity = 192/241 (79.67%), Postives = 203/241 (84.23%), Query Frame = 0


Query: 1   MGFCRSLSSLRRLSQRTSCFHSLPSSSHSASARSVSCSKTISTNQTSICISSPCNEHSTG 60
           MGF RSLSSL+RL  RTS F         ASARS SCSKTI+ NQTSICISS CNEHST 
Sbjct: 1   MGFRRSLSSLQRLFPRTSSF-------QYASARSFSCSKTITRNQTSICISSRCNEHSTW 60

Query: 61  LISNRNYASHHFTDHGTYHRKQDTEANQNSTMGSVEIAQNAEKFCKLISKNPNSCIESLL 120
            I NRNY S H T HG  H KQD EA Q S M S EI Q+AEKFCKLISKNPNSCIESLL
Sbjct: 61  PILNRNYTSQHSTHHGNEHSKQDLEAGQKSIMESDEITQDAEKFCKLISKNPNSCIESLL 120

Query: 121 DGVPMEVSPAVVVEVLKKLSNAGFLALSFFRWAEKQQGFKHTTESYNWLIESLGKIKQFN 180
           DG  +E+SPA++ EVLKKL NAGFLALSFFRWAEKQ+GFKHTTESYN LIE+LGKIKQFN
Sbjct: 121 DGAALELSPALIEEVLKKLCNAGFLALSFFRWAEKQKGFKHTTESYNCLIEALGKIKQFN 180

Query: 181 VIWNLVSDMKRKGILSRETFALISRRYARARKVKEAIESFEKMEKFGFQVGVSDFNRLID 240
           VIWNLVSDMKRKGILSRETFALI+RRYARARKVKEAIESFEKMEKFGFQ+GVSDFNRLID
Sbjct: 181 VIWNLVSDMKRKGILSRETFALITRRYARARKVKEAIESFEKMEKFGFQLGVSDFNRLID 234

Query: 241 T 242
           T
Sbjct: 241 T 234

[Close]

BLAST of Cla97C01G006440 vs. TrEMBL
Match: tr|A0A067KPG2|A0A067KPG2_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04675 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.5e-52
Identity = 132/249 (53.01%), Postives = 169/249 (67.87%), Query Frame = 0


Query: 1   MGFCRSLSSLRRLSQRTSCFHSLPSSSHSASARSVSCS-----KTISTNQTSICISSPCN 60
           MG  R L  L+R+ +R   + S P    S   RS++CS     K I T +       PC 
Sbjct: 1   MGRLRFLFLLQRIPKRHHLYSS-PLCHQSFLIRSLTCSQESFKKQILTEKPYRFPLKPC- 60

Query: 61  EHSTGLISNRNYASHHFTDHGTYHRKQ---DTEANQNSTMGSVEIAQNAEKFCKLISKNP 120
                         +H + H    + Q   D + NQN  + + +I +++EK C ++SKNP
Sbjct: 61  ------------FCYHRSIHSNVEQTQVLIDVD-NQNPEISTCKITEDSEKICGILSKNP 120

Query: 121 NSCIESLLDGVPMEVSPAVVVEVLKKLSNAGFLALSFFRWAEKQQGFKHTTESYNWLIES 180
           NS I++LLD V +EVSPA+V+EVLKKLSNAGFLALSFF+WAEKQ+G  ++TESYN LIES
Sbjct: 121 NSSIDTLLDNVSIEVSPALVLEVLKKLSNAGFLALSFFKWAEKQKGCMYSTESYNALIES 180

Query: 181 LGKIKQFNVIWNLVSDMKRKGILSRETFALISRRYARARKVKEAIESFEKMEKFGFQVGV 240
           LGKI+QF +IWNLVSDMKRKG+LS+ETF LISRRYARARKVKEA+++FEKME FG ++  
Sbjct: 181 LGKIRQFKMIWNLVSDMKRKGLLSKETFTLISRRYARARKVKEAVDTFEKMEMFGLKIES 234

Query: 241 SDFNRLIDT 242
           SDFNRL DT
Sbjct: 241 SDFNRLFDT 234

[Close]

BLAST of Cla97C01G006440 vs. TrEMBL
Match: tr|A0A2N9FCG0|A0A2N9FCG0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16468 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 7.6e-52
Identity = 322/379 (84.96%), Postives = 358/379 (94.46%), Query Frame = 0


Query: 94  SVEIAQNAEKFCKLISKNPNSCIESLLDGVPMEVSPAVVVEVLKKLSNAGFLALSFFRWA 153
           S  + ++ EK CKL+S   +S IE++LDG  +EVSP +VVEVLKKLSNAG LALSFF+WA
Sbjct: 98  SNRVFEDTEKVCKLLSNGSSSSIEAVLDGAKVEVSPLLVVEVLKKLSNAGALALSFFQWA 157

Query: 154 EKQQGFKHTTESYNWLIESLGKIKQFNVIWNLVSDMKRKGILSRETFALISRRYARARKV 213
           EK++GFK++ ESYN LIE+LGKIKQF ++WN+VSDMKRKG+LS+ETFALI+RRYARAR+V
Sbjct: 158 EKKEGFKYSNESYNALIEALGKIKQFKMVWNIVSDMKRKGLLSKETFALITRRYARARQV 217

Query: 214 KEAIESFEKMEKFGFQVGVSDFNRLIDTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 273
           KEA+++FEK+EKFG ++ VSD+NRL+DT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 218 KEAVDTFEKIEKFGMKLEVSDYNRLLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 277

Query: 274 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 333
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 278 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 337

Query: 334 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 393
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 338 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 397

Query: 394 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQRMSSEPGCEPTVSTYEIMVRMF 453
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FQRMSSE GCEPTVSTYEI+VRMF
Sbjct: 398 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFQRMSSELGCEPTVSTYEIIVRMF 457

Query: 454 CNEERLDMAIQIWDEMKAK 473
           CNEE++DMAI++WD+MKAK
Sbjct: 458 CNEEQVDMAIRVWDQMKAK 476

[Close]

BLAST of Cla97C01G006440 vs. TrEMBL
Match: tr|A0A2K1YSH5|A0A2K1YSH5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G114700v3 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 9.9e-52
Identity = 129/235 (54.89%), Postives = 167/235 (71.06%), Query Frame = 0


Query: 9   SLRRLSQRTSCFHSLPSSSHSASARSVSCSKTISTNQTSICISSPCNEHSTGLISNRNYA 68
           +L R S   S   + PS  +S+S   +     I  NQT    S+P  E+  G + N ++ 
Sbjct: 2   ALSRFSSFLSRTPNNPSLLYSSSPFVLRSLVNIK-NQTLSLNSTPNFENPFGSMLNPHFI 61

Query: 69  SHHFTDHGTYHRKQDTEA-NQNSTMGSVEIAQNAEKFCKLISKNPNSCIESLLDGVPMEV 128
            H  T          T+A NQ   + + +I ++AE  CKL+SKNPNS +E+LL+   MEV
Sbjct: 62  VHKSTHTDLQQTVVLTDASNQTPQVLADKIVEDAENICKLLSKNPNSSVEALLNKASMEV 121

Query: 129 SPAVVVEVLKKLSNAGFLALSFFRWAEKQQGFKHTTESYNWLIESLGKIKQFNVIWNLVS 188
           SP++V E LKKLSNAG LALSFFRWAEKQ+GF+++TESY+ LIESLGKIKQFNVIWNLV+
Sbjct: 122 SPSLVFEALKKLSNAGALALSFFRWAEKQKGFQYSTESYHALIESLGKIKQFNVIWNLVT 181

Query: 189 DMKRKGILSRETFALISRRYARARKVKEAIESFEKMEKFGFQVGVSDFNRLIDTL 243
           DMK+KG+L++ETFALISRRYARARKVKEA+++F KMEKFG ++  SD NRL+DTL
Sbjct: 182 DMKQKGLLNKETFALISRRYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDTL 235

[Close]

BLAST of Cla97C01G006440 vs. Swiss-Prot
Match: sp|Q9C9A2|PP112_ARATH (Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g71060 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 8.1e-49
Identity = 101/176 (57.39%), Postives = 139/176 (78.98%), Query Frame = 0


Query: 67  YASHHFTDHGTYHRKQ-DTEANQNSTMGSVEIAQNAEKFCKLISKNPNSCIESLLDGVPM 126
           + + +FT +G++H    +T+ + N      + +Q+AE+ CK+++K  +S +E+LL+   +
Sbjct: 37  HKASNFTLYGSFHASSVETQVSAN------DASQDAERICKILTKFTDSKVETLLNEASV 96

Query: 127 EVSPAVVVEVLKKLSNAGFLALSFFRWAEKQQGFKHTTESYNWLIESLGKIKQFNVIWNL 186
           ++SPA++ EVLKKLSNAG LALS F+WAE Q+GFKHTT +YN LIESLGKIKQF +IW+L
Sbjct: 97  KLSPALIEEVLKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSL 156

Query: 187 VSDMKRKGILSRETFALISRRYARARKVKEAIESFEKMEKFGFQVGVSDFNRLIDT 242
           V DMK K +LS+ETFALISRRYARARKVKEAI +F KME+FGF++  SDFNR++DT
Sbjct: 157 VDDMKAKKLLSKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDT 206

[Close]

BLAST of Cla97C01G006440 vs. Swiss-Prot
Match: sp|Q9FVX2|PP129_ARATH (Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g77360 PE=2 SV=2)

HSP 1 Score: 120.9 bits (302), Expect = 4.3e-26
Identity = 57/147 (38.78%), Postives = 96/147 (65.31%), Query Frame = 0


Query: 96  EIAQNAEKFCKLISKNPNSCIESLLDGVPMEVSPAVVVEVLKKLSNAGFLALSFFRWAEK 155
           ++A  A+   K++  +P   ++S LD   + VS  VV +VL +  NAG L   FF+W+EK
Sbjct: 67  DVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEK 126

Query: 156 QQGFKHTTESYNWLIESLGKIKQFNVIWNLVSDMKRKGILSRETFALISRRYARARKVKE 215
           Q+ ++H+  +Y+ +IES  KI+Q+ ++W+L++ M++K +L+ ETF ++ R+YARA+KV E
Sbjct: 127 QRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQKVDE 186

Query: 216 AIESFEKMEKFGFQVGVSDFNRLIDTL 243
           AI +F  MEK+     +  FN L+  L
Sbjct: 187 AIYAFNVMEKYDLPPNLVAFNGLLSAL 213

[Close]

BLAST of Cla97C01G006440 vs. Swiss-Prot
Match: sp|Q3EAF8|PP294_ARATH (Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g62540 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.3e-19
Identity = 53/167 (31.74%), Postives = 104/167 (62.28%), Query Frame = 0


Query: 81  KQDTEANQNSTMGSVEIAQN---AEKFCKLISK--NPNSCIESLLDGVPMEVSPAVVVEV 140
           + + + ++ + +  VE + N    E+ CK+I +    +  +E++LD + +++S  ++VEV
Sbjct: 108 ESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEV 167

Query: 141 LKKLSNAGFLALSFFRWAEKQQGFKHTTESYNWLIESLGKIKQFNVIWNLVSDMKRKGIL 200
           L++  +A   A  FF WA ++QGF H + +YN ++  L K +QF  + +++ +M  KG+L
Sbjct: 168 LERFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLL 227

Query: 201 SRETFALISRRYARARKVKEAIESFEKMEKFGFQVGVSDFNRLIDTL 243
           + ETF +  + +A A++ K+A+  FE M+K+ F++GV   N L+D+L
Sbjct: 228 TMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSL 274

[Close]

BLAST of Cla97C01G006440 vs. Swiss-Prot
Match: sp|Q9LZP3|PP293_ARATH (Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g62470 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.8e-19
Identity = 53/167 (31.74%), Postives = 104/167 (62.28%), Query Frame = 0


Query: 81  KQDTEANQNSTMGSVEIAQN---AEKFCKLISK--NPNSCIESLLDGVPMEVSPAVVVEV 140
           + + + ++ + +  VE + N    E+ CK+I +    +  +E++LD + +++S  ++VEV
Sbjct: 108 ESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEV 167

Query: 141 LKKLSNAGFLALSFFRWAEKQQGFKHTTESYNWLIESLGKIKQFNVIWNLVSDMKRKGIL 200
           L++  +A   A  FF WA ++QGF H + +YN ++  L K +QF  + +++ +M  KG+L
Sbjct: 168 LERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLL 227

Query: 201 SRETFALISRRYARARKVKEAIESFEKMEKFGFQVGVSDFNRLIDTL 243
           + ETF +  + +A A++ K+A+  FE M+K+ F++GV   N L+D+L
Sbjct: 228 TMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSL 274

[Close]

BLAST of Cla97C01G006440 vs. Swiss-Prot
Match: sp|Q9LEQ7|PP382_ARATH (Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g14820 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.8e-19
Identity = 53/167 (31.74%), Postives = 104/167 (62.28%), Query Frame = 0


Query: 81  KQDTEANQNSTMGSVEIAQN---AEKFCKLISK--NPNSCIESLLDGVPMEVSPAVVVEV 140
           + + + ++ + +  VE + N    E+ CK+I +    +  +E++LD + +++S  ++VEV
Sbjct: 107 ESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEV 166

Query: 141 LKKLSNAGFLALSFFRWAEKQQGFKHTTESYNWLIESLGKIKQFNVIWNLVSDMKRKGIL 200
           L++  +A   A  FF WA ++QGF H + +YN ++  L K +QF  + +++ +M  KG+L
Sbjct: 167 LERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLL 226

Query: 201 SRETFALISRRYARARKVKEAIESFEKMEKFGFQVGVSDFNRLIDTL 243
           + ETF +  + +A A++ K+A+  FE M+K+ F++GV   N L+D+L
Sbjct: 227 TMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSL 273

[Close]

BLAST of Cla97C01G006440 vs. TAIR10
Match: AT1G71060.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 196.4 bits (498), Expect = 4.5e-50
Identity = 101/176 (57.39%), Postives = 139/176 (78.98%), Query Frame = 0


Query: 67  YASHHFTDHGTYHRKQ-DTEANQNSTMGSVEIAQNAEKFCKLISKNPNSCIESLLDGVPM 126
           + + +FT +G++H    +T+ + N      + +Q+AE+ CK+++K  +S +E+LL+   +
Sbjct: 37  HKASNFTLYGSFHASSVETQVSAN------DASQDAERICKILTKFTDSKVETLLNEASV 96

Query: 127 EVSPAVVVEVLKKLSNAGFLALSFFRWAEKQQGFKHTTESYNWLIESLGKIKQFNVIWNL 186
           ++SPA++ EVLKKLSNAG LALS F+WAE Q+GFKHTT +YN LIESLGKIKQF +IW+L
Sbjct: 97  KLSPALIEEVLKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSL 156

Query: 187 VSDMKRKGILSRETFALISRRYARARKVKEAIESFEKMEKFGFQVGVSDFNRLIDT 242
           V DMK K +LS+ETFALISRRYARARKVKEAI +F KME+FGF++  SDFNR++DT
Sbjct: 157 VDDMKAKKLLSKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDT 206

[Close]

BLAST of Cla97C01G006440 vs. TAIR10
Match: AT1G77360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 120.9 bits (302), Expect = 2.4e-27
Identity = 57/147 (38.78%), Postives = 96/147 (65.31%), Query Frame = 0


Query: 96  EIAQNAEKFCKLISKNPNSCIESLLDGVPMEVSPAVVVEVLKKLSNAGFLALSFFRWAEK 155
           ++A  A+   K++  +P   ++S LD   + VS  VV +VL +  NAG L   FF+W+EK
Sbjct: 67  DVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEK 126

Query: 156 QQGFKHTTESYNWLIESLGKIKQFNVIWNLVSDMKRKGILSRETFALISRRYARARKVKE 215
           Q+ ++H+  +Y+ +IES  KI+Q+ ++W+L++ M++K +L+ ETF ++ R+YARA+KV E
Sbjct: 127 QRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQKVDE 186

Query: 216 AIESFEKMEKFGFQVGVSDFNRLIDTL 243
           AI +F  MEK+     +  FN L+  L
Sbjct: 187 AIYAFNVMEKYDLPPNLVAFNGLLSAL 213

[Close]

BLAST of Cla97C01G006440 vs. TAIR10
Match: AT3G62540.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 99.4 bits (246), Expect = 7.5e-21
Identity = 53/167 (31.74%), Postives = 104/167 (62.28%), Query Frame = 0


Query: 81  KQDTEANQNSTMGSVEIAQN---AEKFCKLISK--NPNSCIESLLDGVPMEVSPAVVVEV 140
           + + + ++ + +  VE + N    E+ CK+I +    +  +E++LD + +++S  ++VEV
Sbjct: 108 ESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEV 167

Query: 141 LKKLSNAGFLALSFFRWAEKQQGFKHTTESYNWLIESLGKIKQFNVIWNLVSDMKRKGIL 200
           L++  +A   A  FF WA ++QGF H + +YN ++  L K +QF  + +++ +M  KG+L
Sbjct: 168 LERFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLL 227

Query: 201 SRETFALISRRYARARKVKEAIESFEKMEKFGFQVGVSDFNRLIDTL 243
           + ETF +  + +A A++ K+A+  FE M+K+ F++GV   N L+D+L
Sbjct: 228 TMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSL 274

[Close]

BLAST of Cla97C01G006440 vs. TAIR10
Match: AT3G62470.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 99.0 bits (245), Expect = 9.7e-21
Identity = 53/167 (31.74%), Postives = 104/167 (62.28%), Query Frame = 0


Query: 81  KQDTEANQNSTMGSVEIAQN---AEKFCKLISK--NPNSCIESLLDGVPMEVSPAVVVEV 140
           + + + ++ + +  VE + N    E+ CK+I +    +  +E++LD + +++S  ++VEV
Sbjct: 108 ESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEV 167

Query: 141 LKKLSNAGFLALSFFRWAEKQQGFKHTTESYNWLIESLGKIKQFNVIWNLVSDMKRKGIL 200
           L++  +A   A  FF WA ++QGF H + +YN ++  L K +QF  + +++ +M  KG+L
Sbjct: 168 LERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLL 227

Query: 201 SRETFALISRRYARARKVKEAIESFEKMEKFGFQVGVSDFNRLIDTL 243
           + ETF +  + +A A++ K+A+  FE M+K+ F++GV   N L+D+L
Sbjct: 228 TMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSL 274

[Close]

BLAST of Cla97C01G006440 vs. TAIR10
Match: AT5G14820.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 99.0 bits (245), Expect = 9.7e-21
Identity = 53/167 (31.74%), Postives = 104/167 (62.28%), Query Frame = 0


Query: 81  KQDTEANQNSTMGSVEIAQN---AEKFCKLISK--NPNSCIESLLDGVPMEVSPAVVVEV 140
           + + + ++ + +  VE + N    E+ CK+I +    +  +E++LD + +++S  ++VEV
Sbjct: 107 ESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEV 166

Query: 141 LKKLSNAGFLALSFFRWAEKQQGFKHTTESYNWLIESLGKIKQFNVIWNLVSDMKRKGIL 200
           L++  +A   A  FF WA ++QGF H + +YN ++  L K +QF  + +++ +M  KG+L
Sbjct: 167 LERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLL 226

Query: 201 SRETFALISRRYARARKVKEAIESFEKMEKFGFQVGVSDFNRLIDTL 243
           + ETF +  + +A A++ K+A+  FE M+K+ F++GV   N L+D+L
Sbjct: 227 TMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSL 273

The following BLAST results are available for this feature:

BLAST of Cla97C01G006440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539133.1	2.4e-97	87.05	pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucurbita ...	[more]
XP_022989978.1	2.0e-96	87.08	pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucurbita ...	[more]
XP_004150483.1	4.9e-95	80.08	PREDICTED: pentatricopeptide repeat-containing protein At1g71060, mitochondrial ...	[more]
XP_022960260.1	6.4e-95	78.10	pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Cucurbita ...	[more]
XP_008467144.1	2.1e-93	79.67	PREDICTED: pentatricopeptide repeat-containing protein At1g71060, mitochondrial ...	[more]

BLAST of Cla97C01G006440 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KUY5\|A0A0A0KUY5_CUCSA	3.2e-95	80.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571490 PE=4 SV=1	[more]
tr\|A0A1S3CT11\|A0A1S3CT11_CUCME	1.4e-93	79.67	pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Cucumis ...	[more]
tr\|A0A067KPG2\|A0A067KPG2_JATCU	1.5e-52	53.01	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04675 PE=4 SV=1	[more]
tr\|A0A2N9FCG0\|A0A2N9FCG0_FAGSY	7.6e-52	84.96	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16468 PE=4 SV=1	[more]
tr\|A0A2K1YSH5\|A0A2K1YSH5_POPTR	9.9e-52	54.89	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G114700v3 PE=...	[more]

BLAST of Cla97C01G006440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C9A2\|PP112_ARATH	8.1e-49	57.39	Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidop...	[more]
sp\|Q9FVX2\|PP129_ARATH	4.3e-26	38.78	Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidop...	[more]
sp\|Q3EAF8\|PP294_ARATH	1.3e-19	31.74	Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidop...	[more]
sp\|Q9LZP3\|PP293_ARATH	1.8e-19	31.74	Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidop...	[more]
sp\|Q9LEQ7\|PP382_ARATH	1.8e-19	31.74	Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidop...	[more]

BLAST of Cla97C01G006440 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G71060.1	4.5e-50	57.39	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G77360.1	2.4e-27	38.78	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G62540.1	7.5e-21	31.74	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G62470.1	9.7e-21	31.74	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G14820.1	9.7e-21	31.74	Pentatricopeptide repeat (PPR) superfamily protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G006440.1	Cla97C01G006440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 282..413 e-value: 3.3E-36 score: 127.2 coord: 140..281 e-value: 3.9E-24 score: 87.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 414..544 e-value: 5.6E-29 score: 102.8
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 207..228 e-value: 0.041 score: 14.0
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 374..406 e-value: 7.8E-5 score: 20.6 coord: 269..302 e-value: 1.0E-4 score: 20.3 coord: 409..443 e-value: 4.2E-5 score: 21.5 coord: 480..511 e-value: 4.5E-7 score: 27.6 coord: 235..267 e-value: 1.3E-5 score: 23.0 coord: 445..476 e-value: 7.0E-7 score: 27.0 coord: 339..370 e-value: 9.6E-6 score: 23.5 coord: 303..336 e-value: 1.8E-9 score: 35.2
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 235..276 e-value: 6.3E-10 score: 39.0 coord: 449..489 e-value: 8.1E-8 score: 32.2 coord: 374..418 e-value: 2.0E-10 score: 40.6 coord: 301..347 e-value: 1.6E-14 score: 53.7
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 477..511 score: 10.742
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 336..370 score: 10.676
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 371..405 score: 10.676
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 196..230 score: 9.262
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 442..476 score: 12.057
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 406..441 score: 8.429
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 162..192 score: 7.18
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 266..300 score: 10.073
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 231..265 score: 10.435
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 512..546 score: 5.557
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 301..335 score: 13.154
None	No IPR available	PANTHER	PTHR24015:SF261	SUBFAMILY NOT NAMED	coord: 60..547
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 60..547

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G006440	Cla003917	Watermelon (97103) v1	wmwmbB236
Cla97C01G006440	Csa5G571490	Cucumber (Chinese Long) v2	cuwmbB344
Cla97C01G006440	ClCG01G006140	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G006440	CSPI05G19690	Wild cucumber (PI 183967)	cpiwmbB358
Cla97C01G006440	Cucsa.280460	Cucumber (Gy14) v1	cgywmbB485
Cla97C01G006440	CmaCh04G020950	Cucurbita maxima (Rimu)	cmawmbB705
Cla97C01G006440	CmoCh04G021980	Cucurbita moschata (Rifu)	cmowmbB676
Cla97C01G006440	Lsi09G006500	Bottle gourd (USVL1VR-Ls)	lsiwmbB007
Cla97C01G006440	CsGy5G019180	Cucumber (Gy14) v2	cgybwmbB327
Cla97C01G006440	Carg26044	Silver-seed gourd	carwmbB0450
Cla97C01G006440	CsaV3_5G028520	Cucumber (Chinese Long) v3	cucwmbB359
Cla97C01G006440	Bhi12G000771	Wax gourd	wgowmbB054

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G006440	Watermelon (97103) v2	wmbwmbB004
Cla97C01G006440	Watermelon (97103) v2	wmbwmbB025
Cla97C01G006440	Silver-seed gourd	carwmbB0195
Cla97C01G006440	Silver-seed gourd	carwmbB0870
Cla97C01G006440	Silver-seed gourd	carwmbB1108
Cla97C01G006440	Cucumber (Gy14) v2	cgybwmbB324
Cla97C01G006440	Cucumber (Gy14) v1	cgywmbB493
Cla97C01G006440	Cucurbita maxima (Rimu)	cmawmbB286
Cla97C01G006440	Cucurbita maxima (Rimu)	cmawmbB709
Cla97C01G006440	Cucurbita maxima (Rimu)	cmawmbB711
Cla97C01G006440	Cucurbita moschata (Rifu)	cmowmbB268
Cla97C01G006440	Cucurbita moschata (Rifu)	cmowmbB388
Cla97C01G006440	Cucurbita moschata (Rifu)	cmowmbB679
Cla97C01G006440	Cucurbita moschata (Rifu)	cmowmbB683
Cla97C01G006440	Wild cucumber (PI 183967)	cpiwmbB352
Cla97C01G006440	Cucumber (Chinese Long) v3	cucwmbB356
Cla97C01G006440	Cucumber (Chinese Long) v2	cuwmbB341
Cla97C01G006440	Bottle gourd (USVL1VR-Ls)	lsiwmbB258
Cla97C01G006440	Melon (DHL92) v3.6.1	medwmbB007
Cla97C01G006440	Melon (DHL92) v3.6.1	medwmbB038
Cla97C01G006440	Melon (DHL92) v3.5.1	mewmbB009
Cla97C01G006440	Melon (DHL92) v3.5.1	mewmbB042
Cla97C01G006440	Watermelon (Charleston Gray)	wcgwmbB216
Cla97C01G006440	Watermelon (97103) v1	wmwmbB195
Cla97C01G006440	Wax gourd	wgowmbB511