CsaV3_5G028390 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G028390
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 23581219 .. 23582177 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTCTATAAAAAAAATATATTGAAATTTTGTTATAAAGATTTTCAAACATTAGGCTTAAATTTTAAGATCATGTGGTTAAACCCATAAGACACGCACCCAAATCTTCTCTATGTTTTTCTTTTTTTCTTTTTTTGATCTTTTTCTCACTTTCTTTCATTTTCTCTCCTTCTCCTCTTTTTTTTCTCGGGAAACAAACGCCTCCACCGCCCCTCCGCCACCCTTAAAAACCCGCCTCCGTTTCACGGCGGCGGAATGACACCATCAACCGGAACCTCCAGTCGCCACCGCGTCAGACCCACCACCGCCCTTTTCCTCTTCTTCTGGGTCCTTCTCATTTCAGCTCCGACTACCCTCTGTCTTCACCTTCCCCCGCCGCCCCCGCCATCAAGGAAACTAGCCCGGTTCTCCACGGCGTTCTTTCACCATGCACCACCTACAACTACAACTTCCCCAGCTGAGCTTTTCGACCGCCATCAGTCCGCCGCCGTTGCTGCCGCGTACGGCGAAAACAAGCGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAAGTCCATCAATTTTTGTTTTTTTGTTTATTTTTTTTTTAATATTTTAGAAAATGGGTAGATTAAGATCTTTGTGTTGAACAACTTTTTTTTTCTTCTTTTTTTGTGGAGAAGAATTAGAGCATTAAAGAATTAGCGTTCATAGAGAAATTAATTAAGTTTGAAGGCTAATTATTTGATGCTCTTGTTTCTTTCTATCTACTACTAATGTAATGTTCTTTTTTTCTTTTTTCTTTTTTTTGTACGTTTTGTAACAAAAATTAAATTGTCTTTGAATTTAATTTTCTGTGTATTAATCAATTCTTCTTCTTCTTCTTCTTCTTTCTTCTTTCTTCTTTATTCTCCTTAACCACTGCAAAAACACTGTATCAGAGAATTTATTCCAAAAATAATAATACTAATAATAAAT

mRNA sequence

ATGACACCATCAACCGGAACCTCCAGTCGCCACCGCGTCAGACCCACCACCGCCCTTTTCCTCTTCTTCTGGGTCCTTCTCATTTCAGCTCCGACTACCCTCTGTCTTCACCTTCCCCCGCCGCCCCCGCCATCAAGGAAACTAGCCCGGTTCTCCACGGCGTTCTTTCACCATGCACCACCTACAACTACAACTTCCCCAGCTGAGCTTTTCGACCGCCATCAGTCCGCCGCCGTTGCTGCCGCGTACGGCGAAAACAAGCGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAA

Coding sequence (CDS)

ATGACACCATCAACCGGAACCTCCAGTCGCCACCGCGTCAGACCCACCACCGCCCTTTTCCTCTTCTTCTGGGTCCTTCTCATTTCAGCTCCGACTACCCTCTGTCTTCACCTTCCCCCGCCGCCCCCGCCATCAAGGAAACTAGCCCGGTTCTCCACGGCGTTCTTTCACCATGCACCACCTACAACTACAACTTCCCCAGCTGAGCTTTTCGACCGCCATCAGTCCGCCGCCGTTGCTGCCGCGTACGGCGAAAACAAGCGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAA

Protein sequence

MTPSTGTSSRHRVRPTTALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAPPTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN
Homology
[Close]
BLAST of CsaV3_5G028390 vs. NCBI nr
Match: XP_011656246.1 (PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis sativus] >KGN51492.1 hypothetical protein Csa_5G570370 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.9e-13
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MTPSTGTSSRHRVRPTTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MTPSTGTSSRHRVRPTTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MTPSTGTSSRHRVRPTTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXLFDRHQSAAVAAAYGENKRLIHTGPNPLHN 100
           XXXXXXXXXLFDRHQSAAVAAAYGENKRLIHTGPNPLHN
Sbjct: 61  XXXXXXXXXLFDRHQSAAVAAAYGENKRLIHTGPNPLHN 99

[Close]
BLAST of CsaV3_5G028390 vs. TrEMBL
Match: tr|A0A0A0KSY2|A0A0A0KSY2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MTPSTGTSSRHRVRPTTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MTPSTGTSSRHRVRPTTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MTPSTGTSSRHRVRPTTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXLFDRHQSAAVAAAYGENKRLIHTGPNPLHN 100
           XXXXXXXXXLFDRHQSAAVAAAYGENKRLIHTGPNPLHN
Sbjct: 61  XXXXXXXXXLFDRHQSAAVAAAYGENKRLIHTGPNPLHN 99

The following BLAST results are available for this feature:
BLAST of CsaV3_5G028390 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011656246.11.9e-13100.00PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis sativus] >KGN5149... [more]
BLAST of CsaV3_5G028390 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G028390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G028390 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KSY2|A0A0A0KSY2_CUCSA1.3e-13100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0048731system development
Vocabulary: INTERPRO
TermDefinition
IPR033249CLE_plant
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048731 system development
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G028390.1CsaV3_5G028390.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033249CLAVATA3/ESR (CLE)-related protein, plantPANTHERPTHR34545FAMILY NOT NAMEDcoord: 15..99
NoneNo IPR availablePANTHERPTHR34545:SF2CLAVATA3/ESR CLE -RELATED PROTEIN 16-RELATEDcoord: 15..99

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G028390CSPI05G19540Wild cucumber (PI 183967)cpicucB284
CsaV3_5G028390Cp4.1LG13g03790Cucurbita pepo (Zucchini)cpecucB0212
CsaV3_5G028390Cp4.1LG01g18520Cucurbita pepo (Zucchini)cpecucB0526
CsaV3_5G028390Carg26341Silver-seed gourdcarcucB0217
CsaV3_5G028390Carg25240Silver-seed gourdcarcucB0917
CsaV3_5G028390Cla003929Watermelon (97103) v1cucwmB441
CsaV3_5G028390MELO3C005302Melon (DHL92) v3.5.1cucmeB350
CsaV3_5G028390ClCG01G006280Watermelon (Charleston Gray)cucwcgB394
CsaV3_5G028390Lsi09G006630Bottle gourd (USVL1VR-Ls)cuclsiB352
CsaV3_5G028390MELO3C005302.2Melon (DHL92) v3.6.1cucmedB342
CsaV3_5G028390Cla97C01G006590Watermelon (97103) v2cucwmbB359
CsaV3_5G028390Bhi12G000787Wax gourdcucwgoB461
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G028390Silver-seed gourdcarcucB0461
CsaV3_5G028390Cucumber (Gy14) v2cgybcucB232
CsaV3_5G028390Cucumber (Gy14) v1cgycucB428
CsaV3_5G028390Cucurbita maxima (Rimu)cmacucB0355
CsaV3_5G028390Cucurbita maxima (Rimu)cmacucB0869
CsaV3_5G028390Cucurbita maxima (Rimu)cmacucB0888
CsaV3_5G028390Cucurbita moschata (Rifu)cmocucB0350
CsaV3_5G028390Cucurbita moschata (Rifu)cmocucB0855
CsaV3_5G028390Cucurbita moschata (Rifu)cmocucB0878
CsaV3_5G028390Cucurbita pepo (Zucchini)cpecucB0547
CsaV3_5G028390Wild cucumber (PI 183967)cpicucB294
CsaV3_5G028390Melon (DHL92) v3.5.1cucmeB355
CsaV3_5G028390Melon (DHL92) v3.5.1cucmeB363
CsaV3_5G028390Melon (DHL92) v3.6.1cucmedB356