Cp4.1LG13g03790 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG13g03790
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG13 : 3971511 .. 3971807 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGTAAGAACCGTAACCTGCCGTCGCCACGGCGACGGAGCCACCACCACCGCGCTTGTTCTCTTCTTGTGGGTTCTTCTCATTTTAGCTCCAGCCACCACCACACTCTGTTTTCAGCTTCCGCCATCGCCGAGGAAACTAGTCCGCTTCTCCACGGCATCGTTTCGCCATGCACCGTCCTCAACTTCCCCAGCCGAGCTTCTGCACCGCCGTCAGTCATCCGCCGGCGCCGCCGCAGCTTACGGCGACGAGAAGCGGTTAATTCACACGGGTCCAAATCCGCTTCACAACTAA

mRNA sequence

ATGAGAGTAAGAACCGTAACCTGCCGTCGCCACGGCGACGGAGCCACCACCACCGCGCTTGTTCTCTTCTTGTGGGTTCTTCTCATTTTAGCTCCAGCCACCACCACACTCTGTTTTCAGCTTCCGCCATCGCCGAGGAAACTAGTCCGCTTCTCCACGGCATCGTTTCGCCATGCACCGTCCTCAACTTCCCCAGCCGAGCTTCTGCACCGCCGTCAGTCATCCGCCGGCGCCGCCGCAGCTTACGGCGACGAGAAGCGGTTAATTCACACGGGTCCAAATCCGCTTCACAACTAA

Coding sequence (CDS)

ATGAGAGTAAGAACCGTAACCTGCCGTCGCCACGGCGACGGAGCCACCACCACCGCGCTTGTTCTCTTCTTGTGGGTTCTTCTCATTTTAGCTCCAGCCACCACCACACTCTGTTTTCAGCTTCCGCCATCGCCGAGGAAACTAGTCCGCTTCTCCACGGCATCGTTTCGCCATGCACCGTCCTCAACTTCCCCAGCCGAGCTTCTGCACCGCCGTCAGTCATCCGCCGGCGCCGCCGCAGCTTACGGCGACGAGAAGCGGTTAATTCACACGGGTCCAAATCCGCTTCACAACTAA

Protein sequence

MRVRTVTCRRHGDGATTTALVLFLWVLLILAPATTTLCFQLPPSPRKLVRFSTASFRHAPSSTSPAELLHRRQSSAGAAAAYGDEKRLIHTGPNPLHN
Homology
[Close]
BLAST of Cp4.1LG13g03790 vs. TrEMBL
Match: A0A0A0KSY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G570370 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.1e-19
Identity = 61/87 (70.11%), Postives = 65/87 (74.71%), Query Frame = 1 

Query: 17 TTALVLFLWVLLILAPATTTLCFQLPPSP---RKLVRFSTASFRHAP--SSTSPAELLHR 76
          TTAL LF WVLLI AP  TTLC  LPP P   RKL RFSTA F HAP  ++TSPAEL  R
Sbjct: 16 TTALFLFFWVLLISAP--TTLCLHLPPPPPPSRKLARFSTAFFHHAPPTTTTSPAELFDR 75

Query: 77 RQSSAGAAAAYGDEKRLIHTGPNPLHN 99
           QS+A  AAAYG+ KRLIHTGPNPLHN
Sbjct: 76 HQSAA-VAAAYGENKRLIHTGPNPLHN 99

[Close]
BLAST of Cp4.1LG13g03790 vs. TrEMBL
Match: M5XHC2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016449mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.9e-06
Identity = 36/104 (34.62%), Postives = 49/104 (47.12%), Query Frame = 1 

Query: 10  RHGDGATTTALVLFLWVLLILAPATTTLCF---------------QLPPSPRKLVRFSTA 69
           RHG G      + F WV+LI AP +  +                 +   SP +  RF   
Sbjct: 68  RHGRGEARNFAIFFFWVILIFAPTSNLVVSASRTSISHGDELGGGRFMRSPSRKTRFPGK 127

Query: 70  SFRHAPSSTSPAELLHRRQSSAGAAAAYGDEKRLIHTGPNPLHN 99
              +APSST   ++ H    + G    YGD+KR++HTGPNPLHN
Sbjct: 128 VSFYAPSSTPSHDVHHFVGINGGPDKLYGDDKRIVHTGPNPLHN 171

[Close]
BLAST of Cp4.1LG13g03790 vs. TAIR10
Match: AT1G70895.1 (AT1G70895.1 CLAVATA3/ESR-RELATED 17)

HSP 1 Score: 49.7 bits (117), Expect = 1.2e-06
Identity = 26/57 (45.61%), Postives = 31/57 (54.39%), Query Frame = 1 

Query: 42 PPSPRKLVRFSTASFRHAPSSTSPAELLHRRQSSAGAAAAYGDEKRLIHTGPNPLHN 99
          PP PRK +R+STA FR   S                    YGD+KR++HTGPNPLHN
Sbjct: 59 PPPPRKALRYSTAPFRGPLSRDD----------------IYGDDKRVVHTGPNPLHN 99

[Close]
BLAST of Cp4.1LG13g03790 vs. NCBI nr
Match: gi|659074605|ref|XP_008437694.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 2.4e-20
Identity = 67/103 (65.05%), Postives = 74/103 (71.84%), Query Frame = 1 

Query: 1  MRVRTVTCRRHGDGATTTALVLFLWVLLILAPATTTLCFQLPPSP---RKLVRFSTASFR 60
          M  +T T  RH     TTAL+LF WVLLILAP  TTLC  LPP P   RKL RFSTASFR
Sbjct: 1  MTPQTGTSSRHR-ARPTTALLLFFWVLLILAP--TTLCLHLPPPPPPSRKLARFSTASFR 60

Query: 61 HAP--SSTSPAELLHRRQSSAGAAAAYGDEKRLIHTGPNPLHN 99
          HAP  ++TSPAELL RRQ     A+AY ++KRLIHTGPNPLHN
Sbjct: 61 HAPPTTTTSPAELLDRRQ----PASAYREDKRLIHTGPNPLHN 96

[Close]
BLAST of Cp4.1LG13g03790 vs. NCBI nr
Match: gi|778708615|ref|XP_011656246.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 5.8e-19
Identity = 61/87 (70.11%), Postives = 65/87 (74.71%), Query Frame = 1 

Query: 17 TTALVLFLWVLLILAPATTTLCFQLPPSP---RKLVRFSTASFRHAP--SSTSPAELLHR 76
          TTAL LF WVLLI AP  TTLC  LPP P   RKL RFSTA F HAP  ++TSPAEL  R
Sbjct: 16 TTALFLFFWVLLISAP--TTLCLHLPPPPPPSRKLARFSTAFFHHAPPTTTTSPAELFDR 75

Query: 77 RQSSAGAAAAYGDEKRLIHTGPNPLHN 99
           QS+A  AAAYG+ KRLIHTGPNPLHN
Sbjct: 76 HQSAA-VAAAYGENKRLIHTGPNPLHN 99

[Close]
BLAST of Cp4.1LG13g03790 vs. NCBI nr
Match: gi|596224536|ref|XP_007224160.1| (hypothetical protein PRUPE_ppa016449mg [Prunus persica])

HSP 1 Score: 58.9 bits (141), Expect = 5.7e-06
Identity = 36/104 (34.62%), Postives = 49/104 (47.12%), Query Frame = 1 

Query: 10  RHGDGATTTALVLFLWVLLILAPATTTLCF---------------QLPPSPRKLVRFSTA 69
           RHG G      + F WV+LI AP +  +                 +   SP +  RF   
Sbjct: 68  RHGRGEARNFAIFFFWVILIFAPTSNLVVSASRTSISHGDELGGGRFMRSPSRKTRFPGK 127

Query: 70  SFRHAPSSTSPAELLHRRQSSAGAAAAYGDEKRLIHTGPNPLHN 99
              +APSST   ++ H    + G    YGD+KR++HTGPNPLHN
Sbjct: 128 VSFYAPSSTPSHDVHHFVGINGGPDKLYGDDKRIVHTGPNPLHN 171

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g03790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g03790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSY2_CUCSA4.1e-1970.11Uncharacterized protein OS=Cucumis sativus GN=Csa_5G570370 PE=4 SV=1[more]
M5XHC2_PRUPE3.9e-0634.62Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016449mg PE=4 SV=1[more]
BLAST of Cp4.1LG13g03790 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G70895.11.2e-0645.61 CLAVATA3/ESR-RELATED 17[more]
BLAST of Cp4.1LG13g03790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074605|ref|XP_008437694.1|2.4e-2065.05PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo][more]
gi|778708615|ref|XP_011656246.1|5.8e-1970.11PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis sativus][more]
gi|596224536|ref|XP_007224160.1|5.7e-0634.62hypothetical protein PRUPE_ppa016449mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0048731system development
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048731 system development
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g03790.1Cp4.1LG13g03790.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34545:SF2CLAVATA3/ESR (CLE)-RELATED PROTEIN 16-RELATEDcoord: 1..98
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG13g03790Cla003929Watermelon (97103) v1cpewmB188
Cp4.1LG13g03790Csa5G570370Cucumber (Chinese Long) v2cpecuB177
Cp4.1LG13g03790MELO3C005302Melon (DHL92) v3.5.1cpemeB149
Cp4.1LG13g03790ClCG01G006280Watermelon (Charleston Gray)cpewcgB169
Cp4.1LG13g03790CSPI05G19540Wild cucumber (PI 183967)cpecpiB179
Cp4.1LG13g03790Lsi09G006630Bottle gourd (USVL1VR-Ls)cpelsiB135
Cp4.1LG13g03790MELO3C005302.2Melon (DHL92) v3.6.1cpemedB176
Cp4.1LG13g03790CsaV3_5G028390Cucumber (Chinese Long) v3cpecucB0212
Cp4.1LG13g03790Bhi12G000787Wax gourdcpewgoB0227
Cp4.1LG13g03790Carg26341Silver-seed gourdcarcpeB0274
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG13g03790Cp4.1LG01g18520Cucurbita pepo (Zucchini)cpecpeB200
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG13g03790Cucumber (Gy14) v1cgycpeB0735
Cp4.1LG13g03790Cucurbita maxima (Rimu)cmacpeB305
Cp4.1LG13g03790Cucurbita maxima (Rimu)cmacpeB706
Cp4.1LG13g03790Cucurbita moschata (Rifu)cmocpeB268
Cp4.1LG13g03790Cucurbita moschata (Rifu)cmocpeB658
Cp4.1LG13g03790Cucumber (Gy14) v2cgybcpeB600
Cp4.1LG13g03790Melon (DHL92) v3.6.1cpemedB187
Cp4.1LG13g03790Silver-seed gourdcarcpeB1175
Cp4.1LG13g03790Silver-seed gourdcarcpeB1465
Cp4.1LG13g03790Cucumber (Chinese Long) v3cpecucB0228