Cp4.1LG01g18520 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g18520
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 15748295 .. 15748573 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACTACCAACCCACGCCTCAGCAGCCACCACCGCATCCGCGTTTCTCCTCTTCTTCTGGGTCCTCCTCATTTTTCCTCCGCCGACTCTCTGTCTTCATCTACCACCACCGCCCCCGACGTCAAGGAAACTAGTCCACTTCTCCACGCCGTCCTTATCACATGCAACTTCCCCACCTGAGCTCCTCCACCACCGTCCTACCTCAGCCGCTGCCGCCGCCGTTTACACCGACGACAAGCGGTTAATCCACACGGGTCCGAATCCTCTTCACAACTAA

mRNA sequence

ATGACACTACCAACCCACGCCTCAGCAGCCACCACCGCATCCGCGTTTCTCCTCTTCTTCTGGGTCCTCCTCATTTTTCCTCCGCCGACTCTCTGTCTTCATCTACCACCACCGCCCCCGACGTCAAGGAAACTAGTCCACTTCTCCACGCCGTCCTTATCACATGCAACTTCCCCACCTGAGCTCCTCCACCACCGTCCTACCTCAGCCGCTGCCGCCGCCGTTTACACCGACGACAAGCGGTTAATCCACACGGGTCCGAATCCTCTTCACAACTAA

Coding sequence (CDS)

ATGACACTACCAACCCACGCCTCAGCAGCCACCACCGCATCCGCGTTTCTCCTCTTCTTCTGGGTCCTCCTCATTTTTCCTCCGCCGACTCTCTGTCTTCATCTACCACCACCGCCCCCGACGTCAAGGAAACTAGTCCACTTCTCCACGCCGTCCTTATCACATGCAACTTCCCCACCTGAGCTCCTCCACCACCGTCCTACCTCAGCCGCTGCCGCCGCCGTTTACACCGACGACAAGCGGTTAATCCACACGGGTCCGAATCCTCTTCACAACTAA

Protein sequence

MTLPTHASAATTASAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTPSLSHATSPPELLHHRPTSAAAAAVYTDDKRLIHTGPNPLHN
Homology
[Close]
BLAST of Cp4.1LG01g18520 vs. TrEMBL
Match: A0A0A0KSY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G570370 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.2e-18
Identity = 53/83 (63.86%), Postives = 57/83 (68.67%), Query Frame = 1 

Query: 14 SAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTPSLSHA----TSPPELLHHRPTS 73
          +A  LFFWVLLI  P TLCLHLPPPPP SRKL  FST    HA    T+ P  L  R  S
Sbjct: 17 TALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAPPTTTTSPAELFDRHQS 76

Query: 74 AAAAAVYTDDKRLIHTGPNPLHN 93
          AA AA Y ++KRLIHTGPNPLHN
Sbjct: 77 AAVAAAYGENKRLIHTGPNPLHN 99

[Close]
BLAST of Cp4.1LG01g18520 vs. NCBI nr
Match: gi|659074605|ref|XP_008437694.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo])

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 59/96 (61.46%), Postives = 63/96 (65.62%), Query Frame = 1 

Query: 2  TLPTHASAATTASAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTPSLSHA----- 61
          T   H +  TTA   LLFFWVLLI  P TLCLHLPPPPP SRKL  FST S  HA     
Sbjct: 7  TSSRHRARPTTA--LLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAPPTTT 66

Query: 62 TSPPELLHHRPTSAAAAAVYTDDKRLIHTGPNPLHN 93
          TSP ELL  R  ++A    Y +DKRLIHTGPNPLHN
Sbjct: 67 TSPAELLDRRQPASA----YREDKRLIHTGPNPLHN 96

[Close]
BLAST of Cp4.1LG01g18520 vs. NCBI nr
Match: gi|778708615|ref|XP_011656246.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 1.0e-17
Identity = 53/83 (63.86%), Postives = 57/83 (68.67%), Query Frame = 1 

Query: 14 SAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTPSLSHA----TSPPELLHHRPTS 73
          +A  LFFWVLLI  P TLCLHLPPPPP SRKL  FST    HA    T+ P  L  R  S
Sbjct: 17 TALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAPPTTTTSPAELFDRHQS 76

Query: 74 AAAAAVYTDDKRLIHTGPNPLHN 93
          AA AA Y ++KRLIHTGPNPLHN
Sbjct: 77 AAVAAAYGENKRLIHTGPNPLHN 99

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g18520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g18520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSY2_CUCSA7.2e-1863.86Uncharacterized protein OS=Cucumis sativus GN=Csa_5G570370 PE=4 SV=1[more]
BLAST of Cp4.1LG01g18520 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g18520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074605|ref|XP_008437694.1|1.6e-1861.46PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo][more]
gi|778708615|ref|XP_011656246.1|1.0e-1763.86PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0048731 system development
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g18520.1Cp4.1LG01g18520.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g18520Cla003929Watermelon (97103) v1cpewmB442
Cp4.1LG01g18520Csa5G570370Cucumber (Chinese Long) v2cpecuB424
Cp4.1LG01g18520MELO3C005302Melon (DHL92) v3.5.1cpemeB347
Cp4.1LG01g18520ClCG01G006280Watermelon (Charleston Gray)cpewcgB373
Cp4.1LG01g18520CSPI05G19540Wild cucumber (PI 183967)cpecpiB422
Cp4.1LG01g18520Lsi09G006630Bottle gourd (USVL1VR-Ls)cpelsiB315
Cp4.1LG01g18520MELO3C005302.2Melon (DHL92) v3.6.1cpemedB407
Cp4.1LG01g18520CsaV3_5G028390Cucumber (Chinese Long) v3cpecucB0526
Cp4.1LG01g18520Bhi12G000787Wax gourdcpewgoB0494
Cp4.1LG01g18520Carg26341Silver-seed gourdcarcpeB0275
Cp4.1LG01g18520Carg25240Silver-seed gourdcarcpeB1228
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g18520Cp4.1LG13g03790Cucurbita pepo (Zucchini)cpecpeB200
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g18520Cucumber (Chinese Long) v3cpecucB0547
Cp4.1LG01g18520Wax gourdcpewgoB0491
Cp4.1LG01g18520Cucumber (Gy14) v1cgycpeB0523
Cp4.1LG01g18520Cucumber (Gy14) v1cgycpeB0737
Cp4.1LG01g18520Cucurbita maxima (Rimu)cmacpeB319
Cp4.1LG01g18520Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g18520Cucurbita moschata (Rifu)cmocpeB281
Cp4.1LG01g18520Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g18520Wild cucumber (PI 183967)cpecpiB444
Cp4.1LG01g18520Wild cucumber (PI 183967)cpecpiB454
Cp4.1LG01g18520Cucumber (Chinese Long) v2cpecuB443
Cp4.1LG01g18520Cucumber (Chinese Long) v2cpecuB455
Cp4.1LG01g18520Bottle gourd (USVL1VR-Ls)cpelsiB311
Cp4.1LG01g18520Watermelon (Charleston Gray)cpewcgB370
Cp4.1LG01g18520Watermelon (97103) v1cpewmB440
Cp4.1LG01g18520Melon (DHL92) v3.5.1cpemeB353
Cp4.1LG01g18520Cucumber (Gy14) v2cgybcpeB634
Cp4.1LG01g18520Cucumber (Gy14) v2cgybcpeB651
Cp4.1LG01g18520Melon (DHL92) v3.6.1cpemedB412