Cla97C01G006590 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G006590
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	CLAVATA3/ESR (CLE)-related protein 17-like
Location	Cla97Chr01 : 6530810 .. 6531100 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGTACGAACCGAAACCTGCAGCCGCCACGGTGTCGGAGCCACCACCGCGCTTCTTCTCTTCTTCTGGGTCCTTCTCGTTTTACCTCCGGCTAGCCTCTGTCTTCACCTGCCACTGCCACCGCCGCCGCCACCGTCGAGGAAATTAGCCCGATTCTCCACGGCATCGTTTCGCCATGCACCGCCTGCAACTGAGCTTCTCGACCGCCGTCAGTCAGCCGCCGACGCCGCCGCTTACGGCGACGACAAACGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAA

mRNA sequence

ATGAGAGTACGAACCGAAACCTGCAGCCGCCACGGTGTCGGAGCCACCACCGCGCTTCTTCTCTTCTTCTGGGTCCTTCTCGTTTTACCTCCGGCTAGCCTCTGTCTTCACCTGCCACTGCCACCGCCGCCGCCACCGTCGAGGAAATTAGCCCGATTCTCCACGGCATCGTTTCGCCATGCACCGCCTGCAACTGAGCTTCTCGACCGCCGTCAGTCAGCCGCCGACGCCGCCGCTTACGGCGACGACAAACGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAA

Coding sequence (CDS)

ATGAGAGTACGAACCGAAACCTGCAGCCGCCACGGTGTCGGAGCCACCACCGCGCTTCTTCTCTTCTTCTGGGTCCTTCTCGTTTTACCTCCGGCTAGCCTCTGTCTTCACCTGCCACTGCCACCGCCGCCGCCACCGTCGAGGAAATTAGCCCGATTCTCCACGGCATCGTTTCGCCATGCACCGCCTGCAACTGAGCTTCTCGACCGCCGTCAGTCAGCCGCCGACGCCGCCGCTTACGGCGACGACAAACGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAA

Protein sequence

MRVRTETCSRHGVGATTALLLFFWVLLVLPPASLCLHLPLPPPPPPSRKLARFSTASFRHAPPATELLDRRQSAADAAAYGDDKRLIHTGPNPLHN

Homology

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BLAST of Cla97C01G006590 vs. NCBI nr
Match: XP_011656246.1 (PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis sativus] >KGN51492.1 hypothetical protein Csa_5G570370 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-04
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 0


Query: 67 LLDRRQSAADAAAYGDDKRLIHTGPNPLHN 97
          L DR QSAA AAAYG++KRLIHTGPNPLHN
Sbjct: 70 LFDRHQSAAVAAAYGENKRLIHTGPNPLHN 99

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BLAST of Cla97C01G006590 vs. TrEMBL
Match: tr|A0A0A0KSY2|A0A0A0KSY2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 7.9e-05
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 0


Query: 67 LLDRRQSAADAAAYGDDKRLIHTGPNPLHN 97
          L DR QSAA AAAYG++KRLIHTGPNPLHN
Sbjct: 70 LFDRHQSAAVAAAYGENKRLIHTGPNPLHN 99

[Close]

BLAST of Cla97C01G006590 vs. TAIR10
Match: AT1G70895.1 (CLAVATA3/ESR-RELATED 17)

HSP 1 Score: 42.7 bits (99), Expect = 1.4e-04
Identity = 21/45 (46.67%), Postives = 26/45 (57.78%), Query Frame = 0


Query: 52 RFSTASFRHAPPATELLDRRQSAADAAAYGDDKRLIHTGPNPLHN 97
          R+STA FR      ++            YGDDKR++HTGPNPLHN
Sbjct: 67 RYSTAPFRGPLSRDDI------------YGDDKRVVHTGPNPLHN 99

[Close]

BLAST of Cla97C01G006590 vs. TAIR10
Match: AT2G01505.1 (CLAVATA3/ESR-RELATED 16)

HSP 1 Score: 42.7 bits (99), Expect = 1.4e-04
Identity = 23/50 (46.00%), Postives = 26/50 (52.00%), Query Frame = 0


Query: 49  KLARFSTASFRHAPPATELL--DRRQSAADAAAYGDDKRLIHTGPNPLHN 97
           K   F   +   AP AT      RR+       Y DDKRL+HTGPNPLHN
Sbjct: 54  KAGHFHEMASFQAPKATVSFTGQRREEENRDEVYKDDKRLVHTGPNPLHN 103

The following BLAST results are available for this feature:

BLAST of Cla97C01G006590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656246.1	1.2e-04	83.33	PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis sativus] >KGN5149...	[more]

BLAST of Cla97C01G006590 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KSY2\|A0A0A0KSY2_CUCSA	7.9e-05	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1	[more]

BLAST of Cla97C01G006590 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G006590 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G70895.1	1.4e-04	46.67	CLAVATA3/ESR-RELATED 17	[more]
AT2G01505.1	1.4e-04	46.00	CLAVATA3/ESR-RELATED 16	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0048731	system development

Vocabulary: **INTERPRO**
Term	Definition
IPR033249	CLE_plant

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048731	system development
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G006590.1	Cla97C01G006590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..96
None	No IPR available	PANTHER	PTHR34545:SF2	CLAVATA3/ESR CLE -RELATED PROTEIN 16-RELATED	coord: 5..96
IPR033249	CLAVATA3/ESR (CLE)-related protein, plant	PANTHER	PTHR34545	FAMILY NOT NAMED	coord: 5..96

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G006590	Cla003929	Watermelon (97103) v1	wmwmbB236
Cla97C01G006590	Csa5G570370	Cucumber (Chinese Long) v2	cuwmbB344
Cla97C01G006590	MELO3C005302	Melon (DHL92) v3.5.1	mewmbB009
Cla97C01G006590	ClCG01G006280	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G006590	CSPI05G19540	Wild cucumber (PI 183967)	cpiwmbB358
Cla97C01G006590	Lsi09G006630	Bottle gourd (USVL1VR-Ls)	lsiwmbB007
Cla97C01G006590	MELO3C005302.2	Melon (DHL92) v3.6.1	medwmbB007
Cla97C01G006590	Carg26341	Silver-seed gourd	carwmbB0195
Cla97C01G006590	CsaV3_5G028390	Cucumber (Chinese Long) v3	cucwmbB359
Cla97C01G006590	Bhi12G000787	Wax gourd	wgowmbB054

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G006590	Silver-seed gourd	carwmbB0450
Cla97C01G006590	Silver-seed gourd	carwmbB0920
Cla97C01G006590	Cucumber (Gy14) v2	cgybwmbB323
Cla97C01G006590	Cucumber (Gy14) v2	cgybwmbB327
Cla97C01G006590	Cucumber (Gy14) v1	cgywmbB485
Cla97C01G006590	Cucurbita maxima (Rimu)	cmawmbB286
Cla97C01G006590	Cucurbita maxima (Rimu)	cmawmbB705
Cla97C01G006590	Cucurbita maxima (Rimu)	cmawmbB709
Cla97C01G006590	Cucurbita maxima (Rimu)	cmawmbB710
Cla97C01G006590	Cucurbita moschata (Rifu)	cmowmbB268
Cla97C01G006590	Cucurbita moschata (Rifu)	cmowmbB676
Cla97C01G006590	Cucurbita moschata (Rifu)	cmowmbB679
Cla97C01G006590	Cucurbita moschata (Rifu)	cmowmbB681
Cla97C01G006590	Cucumber (Chinese Long) v3	cucwmbB355