CsaV3_5G014350 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G014350
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	pentatricopeptide repeat-containing protein isoform X3
Location	chr5 : 11350467 .. 11352092 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAAAGAAGCCCTCCAATACTTGGCTCACCTCCGACGAACCTTCCGCTTTCCCACCCCTTTCACCTGCAACAAGCTTCTCCACTCTCTCATCAATTCCGGCTGCGGCCACCTCTCCGCCAAATTGCTTTTCCACTTTCTCTCCAAAGGGTACACTCCTCATCCATCTTCTTTCAATTCCATCATCTCCTTTTTCTGTAGATCAGGAAATGTGAAATTTGCCGAACATATTTTCATTTCTATGTCTAGGTTTGGGTGCTCGCCTGATATTGTGTCCTACAATTCTTTGTTAGATGGGTATTGTTCGAGTTATCAAATTCAGAAAGCCTGCTTTCTTGTGAATAGAGTTCGTGGGTGTGAGTTAAATAGGCCTGATTTGGTGATGTTTAATATACTGTTTAATGGGTTTGCTAAAGTTTATATGAAGAATGAGGCATTTATGTATTTCGGTTTGATGTGGAAATACTGTTTGCCTAGTATTGTTACTTACGGTACGTTTGTTGATATGTTCTGTAAGATGGGGGATATGAAGATGGGTAATAGAATGTTTTTGGATATGATGAAGGTTGGTATTGTGCCTAATTTGGTTGTTTTTAGCTCCTTGATTGATGGCTATTGCAAGGCTGGGAGTTTGGATGTTGCATTTGAATACTTTGAGAGAATGAAAGAATGTTCGGTTCGGCCGAATGAGTTTACATATTCCACGTTGATTGATGGTTGCTCCAAGCATGGGATGTTGGCAAGAGCCGACTCTTTGTTTGAAAAGATGTTGAGTGCTAGTATTCTGCCTAATTGTACGGTTTACACTTCAATAATAGATGGTCATTTTAAGAAGGGAAATGTAGATGATGCGATAAAGTATATTAATCAGATGTTTGATCGAGATATAAAACTAGATTTAACAGCATATACGGTAATTATCTCAGGCTTTCATAGAGTTGGTAGGTTTGATAAATCAATGGAAGCTGCAGAATATGTGGCGAAGAATGGATTACTTCCTGATAGGATAATATTGACAGCTATTATGGATGTCCATTTCAAGGCTGGAAACATAAAAGAAGCTTTGAATGCATACAAAATATTACTCGCAAAGGGTTTTGAGGCTGATGTTGTGACTCTTTCCGCCCTAATGGATGGCCTATCCAAGCATGGGTATTTGCAGGAGGCTAGACGGTATTTGGTCAAAGAAAATGCCAATGAAATTTTATATACAGTGTTTATAGATGCACTATGCAAGGAGGGTAATTTAGATGACGCTGAGAAAATGATTAAGGAGATGTCTGAGGCAGGGTTTGTTCCAGATAAATTTGTGTACACTTCGTGGATTGCTGAACTTTGCAAGCAAGGGAATTTGCTGAAAGCTTTCATGGTTAAGAAAAGGATGGTTCAAGAGCATGTGGAACCTGATTTATTAACTTATAGCTCCCTCATTGGTGGTTTGGCTGAGAAGGGACTAATGATAGAAGCCAAACAGGTTTTTGATGATATGTTAAATAAAGGAATCACTCCAGATTTTGTATCTTATGACATCCTTATTAGAGGATATCATAATCAGGGTAACGGAGCTGCAATTTCAGGTTTACATGACGAAATGAGAAAGAGAGGAATCATTGTTGAAGATTAG

mRNA sequence

ATGGTCAAAGAAGCCCTCCAATACTTGGCTCACCTCCGACGAACCTTCCGCTTTCCCACCCCTTTCACCTGCAACAAGCTTCTCCACTCTCTCATCAATTCCGGCTGCGGCCACCTCTCCGCCAAATTGCTTTTCCACTTTCTCTCCAAAGGGTACACTCCTCATCCATCTTCTTTCAATTCCATCATCTCCTTTTTCTGTAGATCAGGAAATGTGAAATTTGCCGAACATATTTTCATTTCTATGTCTAGGTTTGGGTGCTCGCCTGATATTGTGTCCTACAATTCTTTGTTAGATGGGTATTGTTCGAGTTATCAAATTCAGAAAGCCTGCTTTCTTGTGAATAGAGTTCGTGGGTGTGAGTTAAATAGGCCTGATTTGGTGATGTTTAATATACTGTTTAATGGGTTTGCTAAAGTTTATATGAAGAATGAGGCATTTATGTATTTCGGTTTGATGTGGAAATACTGTTTGCCTAGTATTGTTACTTACGGTACGTTTGTTGATATGTTCTGTAAGATGGGGGATATGAAGATGGGTAATAGAATGTTTTTGGATATGATGAAGGTTGGTATTGTGCCTAATTTGGTTGTTTTTAGCTCCTTGATTGATGGCTATTGCAAGGCTGGGAGTTTGGATGTTGCATTTGAATACTTTGAGAGAATGAAAGAATGTTCGGTTCGGCCGAATGAGTTTACATATTCCACGTTGATTGATGGTTGCTCCAAGCATGGGATGTTGGCAAGAGCCGACTCTTTGTTTGAAAAGATGTTGAGTGCTAGTATTCTGCCTAATTGTACGGTTTACACTTCAATAATAGATGGTCATTTTAAGAAGGGAAATGTAGATGATGCGATAAAGTATATTAATCAGATGTTTGATCGAGATATAAAACTAGATTTAACAGCATATACGGTAATTATCTCAGGCTTTCATAGAGTTGGTAGGTTTGATAAATCAATGGAAGCTGCAGAATATGTGGCGAAGAATGGATTACTTCCTGATAGGATAATATTGACAGCTATTATGGATGTCCATTTCAAGGCTGGAAACATAAAAGAAGCTTTGAATGCATACAAAATATTACTCGCAAAGGGTTTTGAGGCTGATGTTGTGACTCTTTCCGCCCTAATGGATGGCCTATCCAAGCATGGGTATTTGCAGGAGGCTAGACGGTATTTGGTCAAAGAAAATGCCAATGAAATTTTATATACAGTGTTTATAGATGCACTATGCAAGGAGGGTAATTTAGATGACGCTGAGAAAATGATTAAGGAGATGTCTGAGGCAGGGTTTGTTCCAGATAAATTTGTGTACACTTCGTGGATTGCTGAACTTTGCAAGCAAGGGAATTTGCTGAAAGCTTTCATGGTTAAGAAAAGGATGGTTCAAGAGCATGTGGAACCTGATTTATTAACTTATAGCTCCCTCATTGGTGGTTTGGCTGAGAAGGGACTAATGATAGAAGCCAAACAGGTTTTTGATGATATGTTAAATAAAGGAATCACTCCAGATTTTGTATCTTATGACATCCTTATTAGAGGATATCATAATCAGGGTAACGGAGCTGCAATTTCAGGTTTACATGACGAAATGAGAAAGAGAGGAATCATTGTTGAAGATTAG

Coding sequence (CDS)

ATGGTCAAAGAAGCCCTCCAATACTTGGCTCACCTCCGACGAACCTTCCGCTTTCCCACCCCTTTCACCTGCAACAAGCTTCTCCACTCTCTCATCAATTCCGGCTGCGGCCACCTCTCCGCCAAATTGCTTTTCCACTTTCTCTCCAAAGGGTACACTCCTCATCCATCTTCTTTCAATTCCATCATCTCCTTTTTCTGTAGATCAGGAAATGTGAAATTTGCCGAACATATTTTCATTTCTATGTCTAGGTTTGGGTGCTCGCCTGATATTGTGTCCTACAATTCTTTGTTAGATGGGTATTGTTCGAGTTATCAAATTCAGAAAGCCTGCTTTCTTGTGAATAGAGTTCGTGGGTGTGAGTTAAATAGGCCTGATTTGGTGATGTTTAATATACTGTTTAATGGGTTTGCTAAAGTTTATATGAAGAATGAGGCATTTATGTATTTCGGTTTGATGTGGAAATACTGTTTGCCTAGTATTGTTACTTACGGTACGTTTGTTGATATGTTCTGTAAGATGGGGGATATGAAGATGGGTAATAGAATGTTTTTGGATATGATGAAGGTTGGTATTGTGCCTAATTTGGTTGTTTTTAGCTCCTTGATTGATGGCTATTGCAAGGCTGGGAGTTTGGATGTTGCATTTGAATACTTTGAGAGAATGAAAGAATGTTCGGTTCGGCCGAATGAGTTTACATATTCCACGTTGATTGATGGTTGCTCCAAGCATGGGATGTTGGCAAGAGCCGACTCTTTGTTTGAAAAGATGTTGAGTGCTAGTATTCTGCCTAATTGTACGGTTTACACTTCAATAATAGATGGTCATTTTAAGAAGGGAAATGTAGATGATGCGATAAAGTATATTAATCAGATGTTTGATCGAGATATAAAACTAGATTTAACAGCATATACGGTAATTATCTCAGGCTTTCATAGAGTTGGTAGGTTTGATAAATCAATGGAAGCTGCAGAATATGTGGCGAAGAATGGATTACTTCCTGATAGGATAATATTGACAGCTATTATGGATGTCCATTTCAAGGCTGGAAACATAAAAGAAGCTTTGAATGCATACAAAATATTACTCGCAAAGGGTTTTGAGGCTGATGTTGTGACTCTTTCCGCCCTAATGGATGGCCTATCCAAGCATGGGTATTTGCAGGAGGCTAGACGGTATTTGGTCAAAGAAAATGCCAATGAAATTTTATATACAGTGTTTATAGATGCACTATGCAAGGAGGGTAATTTAGATGACGCTGAGAAAATGATTAAGGAGATGTCTGAGGCAGGGTTTGTTCCAGATAAATTTGTGTACACTTCGTGGATTGCTGAACTTTGCAAGCAAGGGAATTTGCTGAAAGCTTTCATGGTTAAGAAAAGGATGGTTCAAGAGCATGTGGAACCTGATTTATTAACTTATAGCTCCCTCATTGGTGGTTTGGCTGAGAAGGGACTAATGATAGAAGCCAAACAGGTTTTTGATGATATGTTAAATAAAGGAATCACTCCAGATTTTGTATCTTATGACATCCTTATTAGAGGATATCATAATCAGGGTAACGGAGCTGCAATTTCAGGTTTACATGACGAAATGAGAAAGAGAGGAATCATTGTTGAAGATTAG

Protein sequence

MVKEALQYLAHLRRTFRFPTPFTCNKLLHSLINSGCGHLSAKLLFHFLSKGYTPHPSSFNSIISFFCRSGNVKFAEHIFISMSRFGCSPDIVSYNSLLDGYCSSYQIQKACFLVNRVRGCELNRPDLVMFNILFNGFAKVYMKNEAFMYFGLMWKYCLPSIVTYGTFVDMFCKMGDMKMGNRMFLDMMKVGIVPNLVVFSSLIDGYCKAGSLDVAFEYFERMKECSVRPNEFTYSTLIDGCSKHGMLARADSLFEKMLSASILPNCTVYTSIIDGHFKKGNVDDAIKYINQMFDRDIKLDLTAYTVIISGFHRVGRFDKSMEAAEYVAKNGLLPDRIILTAIMDVHFKAGNIKEALNAYKILLAKGFEADVVTLSALMDGLSKHGYLQEARRYLVKENANEILYTVFIDALCKEGNLDDAEKMIKEMSEAGFVPDKFVYTSWIAELCKQGNLLKAFMVKKRMVQEHVEPDLLTYSSLIGGLAEKGLMIEAKQVFDDMLNKGITPDFVSYDILIRGYHNQGNGAAISGLHDEMRKRGIIVED

Homology

[Close]

BLAST of CsaV3_5G014350 vs. NCBI nr
Match: XP_011654465.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g01740 isoform X1 [Cucumis sativus])

HSP 1 Score: 259.6 bits (662), Expect = 2.3e-65
Identity = 435/435 (100.00%), Postives = 435/435 (100.00%), Query Frame = 0


Query: 1   MVKEALQYLAHLRRTFRFPTPFTCNKLLHSLINSGCGHLSAKLLFHFLSKGYTXXXXXXX 60
           MVKEALQYLAHLRRTFRFPTPFTCNKLLHSLINSGCGHLSAKLLFHFLSKGYTXXXXXXX
Sbjct: 1   MVKEALQYLAHLRRTFRFPTPFTCNKLLHSLINSGCGHLSAKLLFHFLSKGYTXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKACFLVNRVRGC 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKACFLVNRVRGC
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKACFLVNRVRGC 120

Query: 121 ELNRPDLVMFNILFNGFAKVYMKNEAFMYFGLMWKYCLPSIVTYGTFVDMFCKMGDMKMG 180
           ELNRPDLVMFNILFNGFAKVYMKNEAFMYFGLMWKYCLPSIVTYGTFVDMFCKMGDMKMG
Sbjct: 121 ELNRPDLVMFNILFNGFAKVYMKNEAFMYFGLMWKYCLPSIVTYGTFVDMFCKMGDMKMG 180

Query: 181 NRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           NRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 NRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYLVKENANEILYTVFIDALCKEGNLDDA 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYLVKENANEILYTVFIDALCKEGNLDDA
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYLVKENANEILYTVFIDALCKEGNLDDA 420

Query: 421 EKMIKEMSEAGFVPD 436
           EKMIKEMSEAGFVPD
Sbjct: 421 EKMIKEMSEAGFVPD 435

[Close]

BLAST of CsaV3_5G014350 vs. NCBI nr
Match: XP_011654466.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g01740 isoform X2 [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 6.4e-63
Identity = 379/435 (87.13%), Postives = 380/435 (87.36%), Query Frame = 0


Query: 1   MVKEALQYLAHLRRTFRFPTPFTCNKLLHSLINSGCGHLSAKLLFHFLSKGYTXXXXXXX 60
           MVKEALQYLAHLRRTFRFPTPFTCNKLLHSLINSGCGHLSAKLLFHFLSKG+        
Sbjct: 1   MVKEALQYLAHLRRTFRFPTPFTCNKLLHSLINSGCGHLSAKLLFHFLSKGF-------- 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKACFLVNRVRGC 120
                                                          QKACFLVNRVRGC
Sbjct: 61  -------------------------GCSPDIVSYNSLLDGYCSSYQIQKACFLVNRVRGC 120

Query: 121 ELNRPDLVMFNILFNGFAKVYMKNEAFMYFGLMWKYCLPSIVTYGTFVDMFCKMGDMKMG 180
           ELNRPDLVMFNILFNGFAKVYMKNEAFMYFGLMWKYCLPSIVTYGTFVDMFCKMGDMKMG
Sbjct: 121 ELNRPDLVMFNILFNGFAKVYMKNEAFMYFGLMWKYCLPSIVTYGTFVDMFCKMGDMKMG 180

Query: 181 NRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           NRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 NRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYLVKENANEILYTVFIDALCKEGNLDDA 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYLVKENANEILYTVFIDALCKEGNLDDA
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYLVKENANEILYTVFIDALCKEGNLDDA 402

Query: 421 EKMIKEMSEAGFVPD 436
           EKMIKEMSEAGFVPD
Sbjct: 421 EKMIKEMSEAGFVPD 402

[Close]

BLAST of CsaV3_5G014350 vs. NCBI nr
Match: XP_016901353.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g01740 isoform X3 [Cucumis melo])

HSP 1 Score: 220.7 bits (561), Expect = 1.2e-53
Identity = 116/182 (63.74%), Postives = 120/182 (65.93%), Query Frame = 0


Query: 1   MVKEALQYLAHLRRTFRFPTPFTCNKLLHSLINSGCGHLSAKLLFHFLSKGYTXXXXXXX 60
           MVKEALQ+LAHLRR  RFP+PFTCNKLLHSLINSGCGHLSAKLL H LSKG+        
Sbjct: 1   MVKEALQFLAHLRRISRFPSPFTCNKLLHSLINSGCGHLSAKLLIHLLSKGF-------- 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKACFLVNRVRGC 120
                                                          QKACFLVNRVRGC
Sbjct: 61  -------------------------GCSPDIVSYNSLLDGYCSSCQIQKACFLVNRVRGC 120

Query: 121 ELNRPDLVMFNILFNGFAKVYMKNEAFMYFGLMWKYCLPSIVTYGTFVDMFCKMGDMKMG 180
           ELNRPDLVMFNILF GFAKVYMKNEAFMY GLMWKY LPSIVTYGTFVDMFCKMGDM+MG
Sbjct: 121 ELNRPDLVMFNILFKGFAKVYMKNEAFMYLGLMWKYYLPSIVTYGTFVDMFCKMGDMEMG 149

Query: 181 NR 183
           NR
Sbjct: 181 NR 149

[Close]

BLAST of CsaV3_5G014350 vs. NCBI nr
Match: XP_008452406.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g01740 isoform X2 [Cucumis melo])

HSP 1 Score: 204.5 bits (519), Expect = 9.0e-49
Identity = 162/182 (89.01%), Postives = 165/182 (90.66%), Query Frame = 0


Query: 1   MVKEALQYLAHLRRTFRFPTPFTCNKLLHSLINSGCGHLSAKLLFHFLSKGYTXXXXXXX 60
           MVKEALQ+LAHLRR  RFP+PFTCNKLLHSLINSGCGHLSAK           XXXXXXX
Sbjct: 1   MVKEALQFLAHLRRISRFPSPFTCNKLLHSLINSGCGHLSAKXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKACFLVNRVRGC 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KACFLVNRVRGC
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKACFLVNRVRGC 120

Query: 121 ELNRPDLVMFNILFNGFAKVYMKNEAFMYFGLMWKYCLPSIVTYGTFVDMFCKMGDMKMG 180
           ELNRPDLVMFNILF GFAKVYMKNEAFMY GLMWKY LPSIVTYGTFVDMFCKMGDM+MG
Sbjct: 121 ELNRPDLVMFNILFKGFAKVYMKNEAFMYLGLMWKYYLPSIVTYGTFVDMFCKMGDMEMG 180

Query: 181 NR 183
           NR
Sbjct: 181 NR 182

[Close]

BLAST of CsaV3_5G014350 vs. NCBI nr
Match: XP_008452408.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g01740 isoform X1 [Cucumis melo])

HSP 1 Score: 204.5 bits (519), Expect = 9.0e-49
Identity = 162/182 (89.01%), Postives = 165/182 (90.66%), Query Frame = 0


Query: 1   MVKEALQYLAHLRRTFRFPTPFTCNKLLHSLINSGCGHLSAKLLFHFLSKGYTXXXXXXX 60
           MVKEALQ+LAHLRR  RFP+PFTCNKLLHSLINSGCGHLSAK           XXXXXXX
Sbjct: 1   MVKEALQFLAHLRRISRFPSPFTCNKLLHSLINSGCGHLSAKXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKACFLVNRVRGC 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KACFLVNRVRGC
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKACFLVNRVRGC 120

Query: 121 ELNRPDLVMFNILFNGFAKVYMKNEAFMYFGLMWKYCLPSIVTYGTFVDMFCKMGDMKMG 180
           ELNRPDLVMFNILF GFAKVYMKNEAFMY GLMWKY LPSIVTYGTFVDMFCKMGDM+MG
Sbjct: 121 ELNRPDLVMFNILFKGFAKVYMKNEAFMYLGLMWKYYLPSIVTYGTFVDMFCKMGDMEMG 180

Query: 181 NR 183
           NR
Sbjct: 181 NR 182

[Close]

BLAST of CsaV3_5G014350 vs. TAIR10
Match: AT2G01740.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 87.0 bits (214), Expect = 3.8e-17
Identity = 52/181 (28.73%), Postives = 77/181 (42.54%), Query Frame = 0


Query: 1   MVKEALQYLAHLRRTFRFPTPFTCNKLLHSLINSGCGHLSAKLLFHFLSKGYTXXXXXXX 60
           MV+EALQ+L+ LR++   P PFTCNK +H LINS CG LS K L + +S+GYT       
Sbjct: 1   MVREALQFLSRLRKSSNLPDPFTCNKHIHQLINSNCGILSLKFLAYLVSRGYTPHRSSFN 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKACFLVNRVRGC 120
                                                          + A  ++  +R  
Sbjct: 61  SVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLRAS 120

Query: 121 E--LNRPDLVMFNILFNGFAKVYMKNEAFMYFGLMWKYCLPSIVTYGTFVDMFCKMGDMK 180
                               K+ M +E F+Y G+M K C P++VTY T++D FCK G+++
Sbjct: 121 HXXXXXXXXXXXXXXXXXXXKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDTFCKSGELQ 180

[Close]

BLAST of CsaV3_5G014350 vs. Swiss-Prot
Match: sp|Q9ZUA2|PP141_ARATH (Pentatricopeptide repeat-containing protein At2g01740 OS=Arabidopsis thaliana OX=3702 GN=At2g01740 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 6.8e-16
Identity = 52/181 (28.73%), Postives = 77/181 (42.54%), Query Frame = 0


Query: 1   MVKEALQYLAHLRRTFRFPTPFTCNKLLHSLINSGCGHLSAKLLFHFLSKGYTXXXXXXX 60
           MV+EALQ+L+ LR++   P PFTCNK +H LINS CG LS K L + +S+GYT       
Sbjct: 1   MVREALQFLSRLRKSSNLPDPFTCNKHIHQLINSNCGILSLKFLAYLVSRGYTPHRSSFN 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKACFLVNRVRGC 120
                                                          + A  ++  +R  
Sbjct: 61  SVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLRAS 120

Query: 121 E--LNRPDLVMFNILFNGFAKVYMKNEAFMYFGLMWKYCLPSIVTYGTFVDMFCKMGDMK 180
                               K+ M +E F+Y G+M K C P++VTY T++D FCK G+++
Sbjct: 121 HXXXXXXXXXXXXXXXXXXXKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDTFCKSGELQ 180

[Close]

BLAST of CsaV3_5G014350 vs. TrEMBL
Match: tr|A0A1S4DZF8|A0A1S4DZF8_CUCME (pentatricopeptide repeat-containing protein At2g01740 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103493450 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 8.0e-54
Identity = 116/182 (63.74%), Postives = 120/182 (65.93%), Query Frame = 0


Query: 1   MVKEALQYLAHLRRTFRFPTPFTCNKLLHSLINSGCGHLSAKLLFHFLSKGYTXXXXXXX 60
           MVKEALQ+LAHLRR  RFP+PFTCNKLLHSLINSGCGHLSAKLL H LSKG+        
Sbjct: 1   MVKEALQFLAHLRRISRFPSPFTCNKLLHSLINSGCGHLSAKLLIHLLSKGF-------- 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKACFLVNRVRGC 120
                                                          QKACFLVNRVRGC
Sbjct: 61  -------------------------GCSPDIVSYNSLLDGYCSSCQIQKACFLVNRVRGC 120

Query: 121 ELNRPDLVMFNILFNGFAKVYMKNEAFMYFGLMWKYCLPSIVTYGTFVDMFCKMGDMKMG 180
           ELNRPDLVMFNILF GFAKVYMKNEAFMY GLMWKY LPSIVTYGTFVDMFCKMGDM+MG
Sbjct: 121 ELNRPDLVMFNILFKGFAKVYMKNEAFMYLGLMWKYYLPSIVTYGTFVDMFCKMGDMEMG 149

Query: 181 NR 183
           NR
Sbjct: 181 NR 149

[Close]

BLAST of CsaV3_5G014350 vs. TrEMBL
Match: tr|A0A1S3BTQ4|A0A1S3BTQ4_CUCME (pentatricopeptide repeat-containing protein At2g01740 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493450 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 5.9e-49
Identity = 162/182 (89.01%), Postives = 165/182 (90.66%), Query Frame = 0


Query: 1   MVKEALQYLAHLRRTFRFPTPFTCNKLLHSLINSGCGHLSAKLLFHFLSKGYTXXXXXXX 60
           MVKEALQ+LAHLRR  RFP+PFTCNKLLHSLINSGCGHLSAK           XXXXXXX
Sbjct: 1   MVKEALQFLAHLRRISRFPSPFTCNKLLHSLINSGCGHLSAKXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKACFLVNRVRGC 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KACFLVNRVRGC
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKACFLVNRVRGC 120

Query: 121 ELNRPDLVMFNILFNGFAKVYMKNEAFMYFGLMWKYCLPSIVTYGTFVDMFCKMGDMKMG 180
           ELNRPDLVMFNILF GFAKVYMKNEAFMY GLMWKY LPSIVTYGTFVDMFCKMGDM+MG
Sbjct: 121 ELNRPDLVMFNILFKGFAKVYMKNEAFMYLGLMWKYYLPSIVTYGTFVDMFCKMGDMEMG 180

Query: 181 NR 183
           NR
Sbjct: 181 NR 182

[Close]

BLAST of CsaV3_5G014350 vs. TrEMBL
Match: tr|A0A1S3BUK0|A0A1S3BUK0_CUCME (pentatricopeptide repeat-containing protein At2g01740 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493450 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 5.9e-49
Identity = 162/182 (89.01%), Postives = 165/182 (90.66%), Query Frame = 0


Query: 1   MVKEALQYLAHLRRTFRFPTPFTCNKLLHSLINSGCGHLSAKLLFHFLSKGYTXXXXXXX 60
           MVKEALQ+LAHLRR  RFP+PFTCNKLLHSLINSGCGHLSAK           XXXXXXX
Sbjct: 1   MVKEALQFLAHLRRISRFPSPFTCNKLLHSLINSGCGHLSAKXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKACFLVNRVRGC 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KACFLVNRVRGC
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKACFLVNRVRGC 120

Query: 121 ELNRPDLVMFNILFNGFAKVYMKNEAFMYFGLMWKYCLPSIVTYGTFVDMFCKMGDMKMG 180
           ELNRPDLVMFNILF GFAKVYMKNEAFMY GLMWKY LPSIVTYGTFVDMFCKMGDM+MG
Sbjct: 121 ELNRPDLVMFNILFKGFAKVYMKNEAFMYLGLMWKYYLPSIVTYGTFVDMFCKMGDMEMG 180

Query: 181 NR 183
           NR
Sbjct: 181 NR 182

[Close]

BLAST of CsaV3_5G014350 vs. TrEMBL
Match: tr|A0A1S3BUW7|A0A1S3BUW7_CUCME (pentatricopeptide repeat-containing protein At2g01740 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103493450 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 5.9e-49
Identity = 162/182 (89.01%), Postives = 165/182 (90.66%), Query Frame = 0


Query: 1   MVKEALQYLAHLRRTFRFPTPFTCNKLLHSLINSGCGHLSAKLLFHFLSKGYTXXXXXXX 60
           MVKEALQ+LAHLRR  RFP+PFTCNKLLHSLINSGCGHLSAK           XXXXXXX
Sbjct: 1   MVKEALQFLAHLRRISRFPSPFTCNKLLHSLINSGCGHLSAKXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKACFLVNRVRGC 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KACFLVNRVRGC
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKACFLVNRVRGC 120

Query: 121 ELNRPDLVMFNILFNGFAKVYMKNEAFMYFGLMWKYCLPSIVTYGTFVDMFCKMGDMKMG 180
           ELNRPDLVMFNILF GFAKVYMKNEAFMY GLMWKY LPSIVTYGTFVDMFCKMGDM+MG
Sbjct: 121 ELNRPDLVMFNILFKGFAKVYMKNEAFMYLGLMWKYYLPSIVTYGTFVDMFCKMGDMEMG 180

Query: 181 NR 183
           NR
Sbjct: 181 NR 182

[Close]

BLAST of CsaV3_5G014350 vs. TrEMBL
Match: tr|A0A0A0KPG7|A0A0A0KPG7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G021290 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-25
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 0


Query: 129 MFNILFNGFAKVYMKNEAFMYFGLMWKYCLPSIVTYGTFVDMFCKMGDMKMGNRXXXXXX 188
           MFNILFNGFAKVYMKNEAFMYFGLMWKYCLPSIVTYGTFVDMFCKMGDMKMGNRXXXXXX
Sbjct: 1   MFNILFNGFAKVYMKNEAFMYFGLMWKYCLPSIVTYGTFVDMFCKMGDMKMGNRXXXXXX 60

Query: 189 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 248
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 249 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 308
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 309 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 368
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 369 XXXXXXXXXXXXXXXXXXXXXXXRYLVKENANEILYTVFIDALCKEGNLDDAEKMIKEMS 428
           XXXXXXXXXXXXXXXXXXXXXXXRYLVKENANEILYTVFIDALCKEGNLDDAEKMIKEMS
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXRYLVKENANEILYTVFIDALCKEGNLDDAEKMIKEMS 300

Query: 429 EAGFVPD 436
           EAGFVPD
Sbjct: 301 EAGFVPD 307

The following BLAST results are available for this feature:

BLAST of CsaV3_5G014350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654465.1	2.3e-65	100.00	PREDICTED: pentatricopeptide repeat-containing protein At2g01740 isoform X1 [Cuc...	[more]
XP_011654466.1	6.4e-63	87.13	PREDICTED: pentatricopeptide repeat-containing protein At2g01740 isoform X2 [Cuc...	[more]
XP_016901353.1	1.2e-53	63.74	PREDICTED: pentatricopeptide repeat-containing protein At2g01740 isoform X3 [Cuc...	[more]
XP_008452406.1	9.0e-49	89.01	PREDICTED: pentatricopeptide repeat-containing protein At2g01740 isoform X2 [Cuc...	[more]
XP_008452408.1	9.0e-49	89.01	PREDICTED: pentatricopeptide repeat-containing protein At2g01740 isoform X1 [Cuc...	[more]

BLAST of CsaV3_5G014350 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01740.1	3.8e-17	28.73	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CsaV3_5G014350 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZUA2\|PP141_ARATH	6.8e-16	28.73	Pentatricopeptide repeat-containing protein At2g01740 OS=Arabidopsis thaliana OX...	[more]

BLAST of CsaV3_5G014350 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DZF8\|A0A1S4DZF8_CUCME	8.0e-54	63.74	pentatricopeptide repeat-containing protein At2g01740 isoform X3 OS=Cucumis melo...	[more]
tr\|A0A1S3BTQ4\|A0A1S3BTQ4_CUCME	5.9e-49	89.01	pentatricopeptide repeat-containing protein At2g01740 isoform X2 OS=Cucumis melo...	[more]
tr\|A0A1S3BUK0\|A0A1S3BUK0_CUCME	5.9e-49	89.01	pentatricopeptide repeat-containing protein At2g01740 isoform X1 OS=Cucumis melo...	[more]
tr\|A0A1S3BUW7\|A0A1S3BUW7_CUCME	5.9e-49	89.01	pentatricopeptide repeat-containing protein At2g01740 isoform X4 OS=Cucumis melo...	[more]
tr\|A0A0A0KPG7\|A0A0A0KPG7_CUCSA	1.6e-25	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G021290 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G014350.1	CsaV3_5G014350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 156..258 e-value: 4.8E-32 score: 113.7
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 397..463 e-value: 6.2E-16 score: 60.4 coord: 324..396 e-value: 3.0E-12 score: 48.4 coord: 259..323 e-value: 1.5E-11 score: 46.1 coord: 464..537 e-value: 6.0E-16 score: 60.5
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 1..155 e-value: 7.6E-27 score: 96.5
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 372..394 e-value: 0.061 score: 13.5 coord: 128..155 e-value: 0.79 score: 10.0 coord: 162..192 e-value: 0.0043 score: 17.1 coord: 339..367 e-value: 0.93 score: 9.8
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 58..103 e-value: 2.8E-11 score: 43.3 coord: 473..516 e-value: 1.4E-10 score: 41.1 coord: 400..448 e-value: 9.3E-10 score: 38.4 coord: 194..243 e-value: 1.4E-16 score: 60.3 coord: 264..312 e-value: 1.2E-9 score: 38.0
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 58..91 e-value: 2.7E-7 score: 28.3 coord: 403..435 e-value: 2.4E-10 score: 37.9 coord: 268..300 e-value: 6.6E-7 score: 27.1 coord: 438..470 e-value: 3.0E-5 score: 21.9 coord: 162..195 e-value: 2.1E-6 score: 25.6 coord: 232..266 e-value: 6.2E-9 score: 33.5 coord: 197..231 e-value: 1.1E-9 score: 35.9 coord: 473..505 e-value: 2.7E-7 score: 28.3
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 435..469 score: 9.536
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 370..397 score: 5.853
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 300..334 score: 9.493
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 20..54 score: 7.278
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 400..434 score: 12.923
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 195..229 score: 12.803
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 230..264 score: 12.222
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 126..156 score: 6.314
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 265..299 score: 9.778
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 160..194 score: 10.83
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 55..89 score: 11.027
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 505..539 score: 9.153
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 90..124 score: 8.221
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 335..369 score: 8.079
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 470..504 score: 12.364
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 10..525
None	No IPR available	PANTHER	PTHR24015:SF329	SUBFAMILY NOT NAMED	coord: 10..525
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 202..396

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G014350	CSPI05G00530	Wild cucumber (PI 183967)	cpicucB286
CsaV3_5G014350	Cucsa.392750	Cucumber (Gy14) v1	cgycucB594
CsaV3_5G014350	CmaCh04G000780	Cucurbita maxima (Rimu)	cmacucB0873
CsaV3_5G014350	CmoCh04G000750	Cucurbita moschata (Rifu)	cmocucB0859
CsaV3_5G014350	Cp4.1LG01g06140	Cucurbita pepo (Zucchini)	cpecucB0528
CsaV3_5G014350	CsGy5G010770	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G014350	Carg27443	Silver-seed gourd	carcucB1014
CsaV3_5G014350	Cla002193	Watermelon (97103) v1	cucwmB411
CsaV3_5G014350	MELO3C016659	Melon (DHL92) v3.5.1	cucmeB419
CsaV3_5G014350	ClCG07G005540	Watermelon (Charleston Gray)	cucwcgB428
CsaV3_5G014350	MELO3C016659.2	Melon (DHL92) v3.6.1	cucmedB412
CsaV3_5G014350	Cla97C07G133860	Watermelon (97103) v2	cucwmbB414
CsaV3_5G014350	Bhi07G000365	Wax gourd	cucwgoB517

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G014350	Silver-seed gourd	carcucB0705
CsaV3_5G014350	Cucurbita maxima (Rimu)	cmacucB0870
CsaV3_5G014350	Cucurbita pepo (Zucchini)	cpecucB0529