Cla97C07G133860 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C07G133860
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Pentatricopeptide repeat
Location	Cla97Chr07 : 7622458 .. 7624083 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAAAGAAGCCCTCCAGTTCTTGGCTCACCTTCGACGAATCTCCCGCCTTCCCACCCCTTTCACCTGCAACAGGATTCTGCACTCTCTCATCAACTCCGGCTGTGGCGACCTCTCCGCCAAATTGTTTTTCCACTTGCTCTCCAAAGGGTATACTCCTCATTCATCTTCTTTCAATTCGATCATCTCCTTTTTCTGTAGATTAGGGAATGTGAAATTTGCCGAACGGATTTTGAATTCTATGCCCAGGTTTGGGTGCTCCCCTGATATTGTATCCTACAATTCTTTGTTAGATGGTTATTGTGGGAGTTATCAAATTCAGAAAGCTTGTTTTCTTGTGAATAGAGTTCGTGGGTGTGAGTTGATTAGGCCTGATTTGGTTATGTTTAATATACTGTTTAATGGGTTTGCTAAAGTTTATATGAAGAATGAGGCATTTGTATATCTGGGTTTGATGTGGAAATGCTGTTTGCCTAGTGTTGTTACTTATGGTACGTTTGTTGATATGTTCTGTAAGATGGGGGATATGGAGATGGGTAACAGAATGTTTTTAGATATGATGAAGGTTGGGGTTGTGCCTAATTTGGTTGTTTTTAGCTCCTTGATTGATGGCTATTGCAAGGCTGGGAATTTGGATGTTGCGTTTGGATACTTTGAGAGAATGGAGGAATGTTCCGTTCAGCCAAATGAGTTCACATACTCGACATTGATTGATGGTTGCTGCAAGCATGGGATGTTGGGAAGAGCTGACTCTTTGTTTGAAAAGATGTTGAGTGCCGGTATTCTGCCTAACTGTACTGTTTACACTTCAATAATAGATGGTCATTTTAAGAAGGGAAATGTAGACAATGCGATAAAGTATATAAATGGGATGTTTTATCGAGAGATAAAACTAGATTTAGCAGCATATACGGTAGTTATCTCAGGCTTTCATAAAGTTGGTAGGTTGGATAAATCAATGGAAGCTGCAGCATATGTGGTGAAGAATGGATTACTTCCTGATAGGATTATATTGACAGCTATTATGGATGTGCATTTCAAAGCCGGAAACGTAAAAGAAGCTTTGAATGCATACAAAATATTACTTGCAAGGGGTTTCGAGCCTGATGTCGTGACTCTTTCCGCCCTAATGGATGGCCTATGCAAGCATGGGTATTTGCAGGAGGCTAGACAGTATTTGGATAAAGAAAAGGCCAATGAAATTCTATATACAGTGTTTATAGATGCACTCTGCAAGGAGGGTAATTTAGATGAAGCTGAGAGAACGATTAAGGAGATGTCTGAAGCAGGGTTTGTTCCAGATAAATATGTGTACACTTCTTGGATTGCTGAACTTTGCAAGCAAGGAAATTTGCTGAAGGCTTTCGTGGTCAAGAAAAGGATGGTTCAAGAGCACATTGAACCCGATTTATTAACTTATAGCTCCCTCATTGGTGGTTTGGCTGAGAAGGGACTAATGATAGAAGCCAAACAGGTTTTTGATGACATGTTAAATAAAGGAATCACTCCAGATTCTGTTTCTTATGACATCCTTATAAGAGGGTATCATAATCAGGGTAACGGAGCTGCGATTTCAGGTCTACATGACGAAATGAGAAAGAGAGGAATCACTATTGAAGATTAG

mRNA sequence

ATGGTCAAAGAAGCCCTCCAGTTCTTGGCTCACCTTCGACGAATCTCCCGCCTTCCCACCCCTTTCACCTGCAACAGGATTCTGCACTCTCTCATCAACTCCGGCTGTGGCGACCTCTCCGCCAAATTGTTTTTCCACTTGCTCTCCAAAGGGTATACTCCTCATTCATCTTCTTTCAATTCGATCATCTCCTTTTTCTGTAGATTAGGGAATGTGAAATTTGCCGAACGGATTTTGAATTCTATGCCCAGGTTTGGGTGCTCCCCTGATATTGTATCCTACAATTCTTTGTTAGATGGTTATTGTGGGAGTTATCAAATTCAGAAAGCTTGTTTTCTTGTGAATAGAGTTCGTGGGTGTGAGTTGATTAGGCCTGATTTGGTTATGTTTAATATACTGTTTAATGGGTTTGCTAAAGTTTATATGAAGAATGAGGCATTTGTATATCTGGGTTTGATGTGGAAATGCTGTTTGCCTAGTGTTGTTACTTATGGTACGTTTGTTGATATGTTCTGTAAGATGGGGGATATGGAGATGGGTAACAGAATGTTTTTAGATATGATGAAGGTTGGGGTTGTGCCTAATTTGGTTGTTTTTAGCTCCTTGATTGATGGCTATTGCAAGGCTGGGAATTTGGATGTTGCGTTTGGATACTTTGAGAGAATGGAGGAATGTTCCGTTCAGCCAAATGAGTTCACATACTCGACATTGATTGATGGTTGCTGCAAGCATGGGATGTTGGGAAGAGCTGACTCTTTGTTTGAAAAGATGTTGAGTGCCGGTATTCTGCCTAACTGTACTGTTTACACTTCAATAATAGATGGTCATTTTAAGAAGGGAAATGTAGACAATGCGATAAAGTATATAAATGGGATGTTTTATCGAGAGATAAAACTAGATTTAGCAGCATATACGGTAGTTATCTCAGGCTTTCATAAAGTTGGTAGGTTGGATAAATCAATGGAAGCTGCAGCATATGTGGTGAAGAATGGATTACTTCCTGATAGGATTATATTGACAGCTATTATGGATGTGCATTTCAAAGCCGGAAACGTAAAAGAAGCTTTGAATGCATACAAAATATTACTTGCAAGGGGTTTCGAGCCTGATGTCGTGACTCTTTCCGCCCTAATGGATGGCCTATGCAAGCATGGGTATTTGCAGGAGGCTAGACAGTATTTGGATAAAGAAAAGGCCAATGAAATTCTATATACAGTGTTTATAGATGCACTCTGCAAGGAGGGTAATTTAGATGAAGCTGAGAGAACGATTAAGGAGATGTCTGAAGCAGGGTTTGTTCCAGATAAATATGTGTACACTTCTTGGATTGCTGAACTTTGCAAGCAAGGAAATTTGCTGAAGGCTTTCGTGGTCAAGAAAAGGATGGTTCAAGAGCACATTGAACCCGATTTATTAACTTATAGCTCCCTCATTGGTGGTTTGGCTGAGAAGGGACTAATGATAGAAGCCAAACAGGTTTTTGATGACATGTTAAATAAAGGAATCACTCCAGATTCTGTTTCTTATGACATCCTTATAAGAGGGTATCATAATCAGGGTAACGGAGCTGCGATTTCAGGTCTACATGACGAAATGAGAAAGAGAGGAATCACTATTGAAGATTAG

Coding sequence (CDS)

ATGGTCAAAGAAGCCCTCCAGTTCTTGGCTCACCTTCGACGAATCTCCCGCCTTCCCACCCCTTTCACCTGCAACAGGATTCTGCACTCTCTCATCAACTCCGGCTGTGGCGACCTCTCCGCCAAATTGTTTTTCCACTTGCTCTCCAAAGGGTATACTCCTCATTCATCTTCTTTCAATTCGATCATCTCCTTTTTCTGTAGATTAGGGAATGTGAAATTTGCCGAACGGATTTTGAATTCTATGCCCAGGTTTGGGTGCTCCCCTGATATTGTATCCTACAATTCTTTGTTAGATGGTTATTGTGGGAGTTATCAAATTCAGAAAGCTTGTTTTCTTGTGAATAGAGTTCGTGGGTGTGAGTTGATTAGGCCTGATTTGGTTATGTTTAATATACTGTTTAATGGGTTTGCTAAAGTTTATATGAAGAATGAGGCATTTGTATATCTGGGTTTGATGTGGAAATGCTGTTTGCCTAGTGTTGTTACTTATGGTACGTTTGTTGATATGTTCTGTAAGATGGGGGATATGGAGATGGGTAACAGAATGTTTTTAGATATGATGAAGGTTGGGGTTGTGCCTAATTTGGTTGTTTTTAGCTCCTTGATTGATGGCTATTGCAAGGCTGGGAATTTGGATGTTGCGTTTGGATACTTTGAGAGAATGGAGGAATGTTCCGTTCAGCCAAATGAGTTCACATACTCGACATTGATTGATGGTTGCTGCAAGCATGGGATGTTGGGAAGAGCTGACTCTTTGTTTGAAAAGATGTTGAGTGCCGGTATTCTGCCTAACTGTACTGTTTACACTTCAATAATAGATGGTCATTTTAAGAAGGGAAATGTAGACAATGCGATAAAGTATATAAATGGGATGTTTTATCGAGAGATAAAACTAGATTTAGCAGCATATACGGTAGTTATCTCAGGCTTTCATAAAGTTGGTAGGTTGGATAAATCAATGGAAGCTGCAGCATATGTGGTGAAGAATGGATTACTTCCTGATAGGATTATATTGACAGCTATTATGGATGTGCATTTCAAAGCCGGAAACGTAAAAGAAGCTTTGAATGCATACAAAATATTACTTGCAAGGGGTTTCGAGCCTGATGTCGTGACTCTTTCCGCCCTAATGGATGGCCTATGCAAGCATGGGTATTTGCAGGAGGCTAGACAGTATTTGGATAAAGAAAAGGCCAATGAAATTCTATATACAGTGTTTATAGATGCACTCTGCAAGGAGGGTAATTTAGATGAAGCTGAGAGAACGATTAAGGAGATGTCTGAAGCAGGGTTTGTTCCAGATAAATATGTGTACACTTCTTGGATTGCTGAACTTTGCAAGCAAGGAAATTTGCTGAAGGCTTTCGTGGTCAAGAAAAGGATGGTTCAAGAGCACATTGAACCCGATTTATTAACTTATAGCTCCCTCATTGGTGGTTTGGCTGAGAAGGGACTAATGATAGAAGCCAAACAGGTTTTTGATGACATGTTAAATAAAGGAATCACTCCAGATTCTGTTTCTTATGACATCCTTATAAGAGGGTATCATAATCAGGGTAACGGAGCTGCGATTTCAGGTCTACATGACGAAATGAGAAAGAGAGGAATCACTATTGAAGATTAG

Protein sequence

MVKEALQFLAHLRRISRLPTPFTCNRILHSLINSGCGDLSAKLFFHLLSKGYTPHSSSFNSIISFFCRLGNVKFAERILNSMPRFGCSPDIVSYNSLLDGYCGSYQIQKACFLVNRVRGCELIRPDLVMFNILFNGFAKVYMKNEAFVYLGLMWKCCLPSVVTYGTFVDMFCKMGDMEMGNRMFLDMMKVGVVPNLVVFSSLIDGYCKAGNLDVAFGYFERMEECSVQPNEFTYSTLIDGCCKHGMLGRADSLFEKMLSAGILPNCTVYTSIIDGHFKKGNVDNAIKYINGMFYREIKLDLAAYTVVISGFHKVGRLDKSMEAAAYVVKNGLLPDRIILTAIMDVHFKAGNVKEALNAYKILLARGFEPDVVTLSALMDGLCKHGYLQEARQYLDKEKANEILYTVFIDALCKEGNLDEAERTIKEMSEAGFVPDKYVYTSWIAELCKQGNLLKAFVVKKRMVQEHIEPDLLTYSSLIGGLAEKGLMIEAKQVFDDMLNKGITPDSVSYDILIRGYHNQGNGAAISGLHDEMRKRGITIED

Homology

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BLAST of Cla97C07G133860 vs. NCBI nr
Match: XP_011654466.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g01740 isoform X2 [Cucumis sativus])

HSP 1 Score: 268.5 bits (685), Expect = 5.0e-68
Identity = 133/182 (73.08%), Postives = 139/182 (76.37%), Query Frame = 0


Query: 1   MVKEALQFLAHLRRISRLPTPFTCNRILHSLINSGCGDLSAKLFFHLLSKGYTPHSSSFN 60
           MVKEALQ+LAHLRR  R PTPFTCN++LHSLINSGCG LSAKL FH LSKG         
Sbjct: 1   MVKEALQYLAHLRRTFRFPTPFTCNKLLHSLINSGCGHLSAKLLFHFLSKG--------- 60

Query: 61  SIISFFCRLGNVKFAERILNSMPRFGCSPDIVSYNSLLDGYCGSYQIQKACFLVNRVRGC 120
                                   FGCSPDIVSYNSLLDGYC SYQIQKACFLVNRVRGC
Sbjct: 61  ------------------------FGCSPDIVSYNSLLDGYCSSYQIQKACFLVNRVRGC 120

Query: 121 ELIRPDLVMFNILFNGFAKVYMKNEAFVYLGLMWKCCLPSVVTYGTFVDMFCKMGDMEMG 180
           EL RPDLVMFNILFNGFAKVYMKNEAF+Y GLMWK CLPS+VTYGTFVDMFCKMGDM+MG
Sbjct: 121 ELNRPDLVMFNILFNGFAKVYMKNEAFMYFGLMWKYCLPSIVTYGTFVDMFCKMGDMKMG 149

Query: 181 NR 183
           NR
Sbjct: 181 NR 149

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BLAST of Cla97C07G133860 vs. NCBI nr
Match: XP_016901353.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g01740 isoform X3 [Cucumis melo])

HSP 1 Score: 264.6 bits (675), Expect = 7.3e-67
Identity = 134/182 (73.63%), Postives = 139/182 (76.37%), Query Frame = 0


Query: 1   MVKEALQFLAHLRRISRLPTPFTCNRILHSLINSGCGDLSAKLFFHLLSKGYTPHSSSFN 60
           MVKEALQFLAHLRRISR P+PFTCN++LHSLINSGCG LSAKL  HLLSKG         
Sbjct: 1   MVKEALQFLAHLRRISRFPSPFTCNKLLHSLINSGCGHLSAKLLIHLLSKG--------- 60

Query: 61  SIISFFCRLGNVKFAERILNSMPRFGCSPDIVSYNSLLDGYCGSYQIQKACFLVNRVRGC 120
                                   FGCSPDIVSYNSLLDGYC S QIQKACFLVNRVRGC
Sbjct: 61  ------------------------FGCSPDIVSYNSLLDGYCSSCQIQKACFLVNRVRGC 120

Query: 121 ELIRPDLVMFNILFNGFAKVYMKNEAFVYLGLMWKCCLPSVVTYGTFVDMFCKMGDMEMG 180
           EL RPDLVMFNILF GFAKVYMKNEAF+YLGLMWK  LPS+VTYGTFVDMFCKMGDMEMG
Sbjct: 121 ELNRPDLVMFNILFKGFAKVYMKNEAFMYLGLMWKYYLPSIVTYGTFVDMFCKMGDMEMG 149

Query: 181 NR 183
           NR
Sbjct: 181 NR 149

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BLAST of Cla97C07G133860 vs. NCBI nr
Match: XP_011654465.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g01740 isoform X1 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 4.1e-54
Identity = 113/182 (62.09%), Postives = 119/182 (65.38%), Query Frame = 0


Query: 1   MVKEALQFLAHLRRISRLPTPFTCNRILHSLINSGCGDLSAKLFFHLLSKGYTPHSSSFN 60
           MVKEALQ+LAHLRR  R PTPFTCN++LHSLINSGCG LSAKL FH LSKGYT       
Sbjct: 1   MVKEALQYLAHLRRTFRFPTPFTCNKLLHSLINSGCGHLSAKLLFHFLSKGYTXXXXXXX 60

Query: 61  SIISFFCRLGNVKFAERILNSMPRFGCSPDIVSYNSLLDGYCGSYQIQKACFLVNRVRGC 120
                                                          QKACFLVNRVRGC
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKACFLVNRVRGC 120

Query: 121 ELIRPDLVMFNILFNGFAKVYMKNEAFVYLGLMWKCCLPSVVTYGTFVDMFCKMGDMEMG 180
           EL RPDLVMFNILFNGFAKVYMKNEAF+Y GLMWK CLPS+VTYGTFVDMFCKMGDM+MG
Sbjct: 121 ELNRPDLVMFNILFNGFAKVYMKNEAFMYFGLMWKYCLPSIVTYGTFVDMFCKMGDMKMG 180

Query: 181 NR 183
           NR
Sbjct: 181 NR 182

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BLAST of Cla97C07G133860 vs. NCBI nr
Match: XP_010424946.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g01740-like [Camelina sativa])

HSP 1 Score: 200.7 bits (509), Expect = 1.3e-47
Identity = 91/181 (50.28%), Postives = 126/181 (69.61%), Query Frame = 0


Query: 1   MVKEALQFLAHLRRISRLPTPFTCNRILHSLINSGCGDLSAKLFFHLLSKGYTPHSSSFN 60
           MV+EALQF++ LR+ S  P PFTCN+ +H LINS CG LS K   +L+S+GYTPH S FN
Sbjct: 1   MVREALQFISRLRKSSNFPDPFTCNKHIHQLINSNCGVLSLKFLAYLVSRGYTPHRSYFN 60

Query: 61  SIISFFCRLGNVKFAERILNSMPRFGCSPDIVSYNSLLDGYCGSYQIQKACFLVNRVRGC 120
           S++SF CRLG V+FA+ I++SMPR+GC PD++SYNSL+DGYC +  I+ AC ++ R+R  
Sbjct: 61  SVVSFVCRLGQVQFAQDIVHSMPRYGCEPDVISYNSLIDGYCRNGDIRSACLVLERLRAS 120

Query: 121 ELIRPDLVMFNILFNGFAKVYMK--NEAFVYLGLMWKCCLPSVVTYGTFVDMFCKMGDME 180
                                MK  +E FVY+G+M+KCC P+VVTY T++D FCK G+++
Sbjct: 121 HGXXXXXXXXXXXXXXXXXXXMKMLDEVFVYMGVMFKCCSPNVVTYSTWIDTFCKSGELK 180

[Close]

BLAST of Cla97C07G133860 vs. NCBI nr
Match: NP_178283.1 (Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana] >Q9ZUA2.1 RecName: Full=Pentatricopeptide repeat-containing protein At2g01740 >AAD12698.1 hypothetical protein [Arabidopsis thaliana] >AEC05491.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana] >OAP08106.1 hypothetical protein AXX17_AT2G00730 [Arabidopsis thaliana])

HSP 1 Score: 200.3 bits (508), Expect = 1.7e-47
Identity = 93/181 (51.38%), Postives = 126/181 (69.61%), Query Frame = 0


Query: 1   MVKEALQFLAHLRRISRLPTPFTCNRILHSLINSGCGDLSAKLFFHLLSKGYTPHSSSFN 60
           MV+EALQFL+ LR+ S LP PFTCN+ +H LINS CG LS K   +L+S+GYTPH SSFN
Sbjct: 1   MVREALQFLSRLRKSSNLPDPFTCNKHIHQLINSNCGILSLKFLAYLVSRGYTPHRSSFN 60

Query: 61  SIISFFCRLGNVKFAERILNSMPRFGCSPDIVSYNSLLDGYCGSYQIQKACFLVNRVRGC 120
           S++SF C+LG VKFAE I++SMPRFGC PD++SYNSL+DG+C +  I+ A  ++  +R  
Sbjct: 61  SVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLRAS 120

Query: 121 E--LIRPDLVMFNILFNGFAKVYMKNEAFVYLGLMWKCCLPSVVTYGTFVDMFCKMGDME 180
                               K+ M +E FVY+G+M KCC P+VVTY T++D FCK G+++
Sbjct: 121 HXXXXXXXXXXXXXXXXXXXKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDTFCKSGELQ 180

[Close]

BLAST of Cla97C07G133860 vs. TrEMBL
Match: tr|A0A1S4DZF8|A0A1S4DZF8_CUCME (pentatricopeptide repeat-containing protein At2g01740 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103493450 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 4.8e-67
Identity = 134/182 (73.63%), Postives = 139/182 (76.37%), Query Frame = 0


Query: 1   MVKEALQFLAHLRRISRLPTPFTCNRILHSLINSGCGDLSAKLFFHLLSKGYTPHSSSFN 60
           MVKEALQFLAHLRRISR P+PFTCN++LHSLINSGCG LSAKL  HLLSKG         
Sbjct: 1   MVKEALQFLAHLRRISRFPSPFTCNKLLHSLINSGCGHLSAKLLIHLLSKG--------- 60

Query: 61  SIISFFCRLGNVKFAERILNSMPRFGCSPDIVSYNSLLDGYCGSYQIQKACFLVNRVRGC 120
                                   FGCSPDIVSYNSLLDGYC S QIQKACFLVNRVRGC
Sbjct: 61  ------------------------FGCSPDIVSYNSLLDGYCSSCQIQKACFLVNRVRGC 120

Query: 121 ELIRPDLVMFNILFNGFAKVYMKNEAFVYLGLMWKCCLPSVVTYGTFVDMFCKMGDMEMG 180
           EL RPDLVMFNILF GFAKVYMKNEAF+YLGLMWK  LPS+VTYGTFVDMFCKMGDMEMG
Sbjct: 121 ELNRPDLVMFNILFKGFAKVYMKNEAFMYLGLMWKYYLPSIVTYGTFVDMFCKMGDMEMG 149

Query: 181 NR 183
           NR
Sbjct: 181 NR 149

[Close]

BLAST of Cla97C07G133860 vs. TrEMBL
Match: tr|A0A178VQM4|A0A178VQM4_ARATH (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At2g00730 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-47
Identity = 93/181 (51.38%), Postives = 126/181 (69.61%), Query Frame = 0


Query: 1   MVKEALQFLAHLRRISRLPTPFTCNRILHSLINSGCGDLSAKLFFHLLSKGYTPHSSSFN 60
           MV+EALQFL+ LR+ S LP PFTCN+ +H LINS CG LS K   +L+S+GYTPH SSFN
Sbjct: 1   MVREALQFLSRLRKSSNLPDPFTCNKHIHQLINSNCGILSLKFLAYLVSRGYTPHRSSFN 60

Query: 61  SIISFFCRLGNVKFAERILNSMPRFGCSPDIVSYNSLLDGYCGSYQIQKACFLVNRVRGC 120
           S++SF C+LG VKFAE I++SMPRFGC PD++SYNSL+DG+C +  I+ A  ++  +R  
Sbjct: 61  SVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLRAS 120

Query: 121 E--LIRPDLVMFNILFNGFAKVYMKNEAFVYLGLMWKCCLPSVVTYGTFVDMFCKMGDME 180
                               K+ M +E FVY+G+M KCC P+VVTY T++D FCK G+++
Sbjct: 121 HXXXXXXXXXXXXXXXXXXXKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDTFCKSGELQ 180

[Close]

BLAST of Cla97C07G133860 vs. TrEMBL
Match: tr|V4KT02|V4KT02_EUTSA (Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003932mg PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.5e-47
Identity = 94/181 (51.93%), Postives = 124/181 (68.51%), Query Frame = 0


Query: 1   MVKEALQFLAHLRRISRLPTPFTCNRILHSLINSGCGDLSAKLFFHLLSKGYTPHSSSFN 60
           MV+EALQF++ LR+ S LP P TCN+ +H LINS CG LS K   +LLS+GYTPH SSFN
Sbjct: 1   MVREALQFISRLRKSSNLPDPITCNKYIHQLINSNCGVLSLKFLAYLLSRGYTPHRSSFN 60

Query: 61  SIISFFCRLGNVKFAERILNSMPRFGCSPDIVSYNSLLDGYCGSYQIQKACFLVNRVRGC 120
           S+ SF C+LG VKFAE I++SMPRFGC PD+VSYNSL+DG+C + +I+ A  ++ R+R  
Sbjct: 61  SVASFVCKLGQVKFAEYIVHSMPRFGCLPDVVSYNSLIDGHCRNGEIRSASLVLKRLRAS 120

Query: 121 ELIRPDLVMFNILFNGFAKVYMK--NEAFVYLGLMWKCCLPSVVTYGTFVDMFCKMGDME 180
                                MK   E FVY+G+M KCC P+VVTY T++D FCK G+++
Sbjct: 121 HXXXXXXXXXXXXXXXXXXXXMKMLKEVFVYMGVMLKCCSPNVVTYSTWIDTFCKSGELQ 180

[Close]

BLAST of Cla97C07G133860 vs. TrEMBL
Match: tr|D7LLV1|D7LLV1_ARALL (Pentatricopeptide repeat-containing protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_904382 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.5e-47
Identity = 93/181 (51.38%), Postives = 125/181 (69.06%), Query Frame = 0


Query: 1   MVKEALQFLAHLRRISRLPTPFTCNRILHSLINSGCGDLSAKLFFHLLSKGYTPHSSSFN 60
           MVKEALQFL+ LR+ S LP P TCN+ +H LINS CG LS K   +L+S+GY PH SSFN
Sbjct: 1   MVKEALQFLSRLRKSSNLPDPVTCNKHIHQLINSNCGALSLKFLAYLVSRGYAPHRSSFN 60

Query: 61  SIISFFCRLGNVKFAERILNSMPRFGCSPDIVSYNSLLDGYCGSYQIQKACFLVNRVRG- 120
           S++SF C+LG VKFA  I++SMPRFGC PD++SYNSL+DG+C +  I+ AC ++  +R  
Sbjct: 61  SVVSFVCKLGQVKFAVDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSACLVLESLRAS 120

Query: 121 -CELIRPDLVMFNILFNGFAKVYMKNEAFVYLGLMWKCCLPSVVTYGTFVDMFCKMGDME 180
                               K+ M +E FVY+G+M KCC P+VVTY T++DMFCK G+++
Sbjct: 121 YXXXXXXXXXXXXXXXXXXXKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDMFCKSGELK 180

[Close]

BLAST of Cla97C07G133860 vs. TrEMBL
Match: tr|A0A1S3BTQ4|A0A1S3BTQ4_CUCME (pentatricopeptide repeat-containing protein At2g01740 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493450 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 9.4e-47
Identity = 105/182 (57.69%), Postives = 110/182 (60.44%), Query Frame = 0


Query: 1   MVKEALQFLAHLRRISRLPTPFTCNRILHSLINSGCGDLSAKLFFHLLSKGYTPHSSSFN 60
           MVKEALQFLAHLRRISR P+PFTCN++LHSLINSGCG LSAK                  
Sbjct: 1   MVKEALQFLAHLRRISRFPSPFTCNKLLHSLINSGCGHLSAKXXXXXXXXXXXXXXXXXX 60

Query: 61  SIISFFCRLGNVKFAERILNSMPRFGCSPDIVSYNSLLDGYCGSYQIQKACFLVNRVRGC 120
                                                           KACFLVNRVRGC
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKACFLVNRVRGC 120

Query: 121 ELIRPDLVMFNILFNGFAKVYMKNEAFVYLGLMWKCCLPSVVTYGTFVDMFCKMGDMEMG 180
           EL RPDLVMFNILF GFAKVYMKNEAF+YLGLMWK  LPS+VTYGTFVDMFCKMGDMEMG
Sbjct: 121 ELNRPDLVMFNILFKGFAKVYMKNEAFMYLGLMWKYYLPSIVTYGTFVDMFCKMGDMEMG 180

Query: 181 NR 183
           NR
Sbjct: 181 NR 182

[Close]

BLAST of Cla97C07G133860 vs. Swiss-Prot
Match: sp|Q9ZUA2|PP141_ARATH (Pentatricopeptide repeat-containing protein At2g01740 OS=Arabidopsis thaliana OX=3702 GN=At2g01740 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 5.5e-50
Identity = 93/181 (51.38%), Postives = 126/181 (69.61%), Query Frame = 0


Query: 1   MVKEALQFLAHLRRISRLPTPFTCNRILHSLINSGCGDLSAKLFFHLLSKGYTPHSSSFN 60
           MV+EALQFL+ LR+ S LP PFTCN+ +H LINS CG LS K   +L+S+GYTPH SSFN
Sbjct: 1   MVREALQFLSRLRKSSNLPDPFTCNKHIHQLINSNCGILSLKFLAYLVSRGYTPHRSSFN 60

Query: 61  SIISFFCRLGNVKFAERILNSMPRFGCSPDIVSYNSLLDGYCGSYQIQKACFLVNRVRGC 120
           S++SF C+LG VKFAE I++SMPRFGC PD++SYNSL+DG+C +  I+ A  ++  +R  
Sbjct: 61  SVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLRAS 120

Query: 121 E--LIRPDLVMFNILFNGFAKVYMKNEAFVYLGLMWKCCLPSVVTYGTFVDMFCKMGDME 180
                               K+ M +E FVY+G+M KCC P+VVTY T++D FCK G+++
Sbjct: 121 HXXXXXXXXXXXXXXXXXXXKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDTFCKSGELQ 180

[Close]

BLAST of Cla97C07G133860 vs. Swiss-Prot
Match: sp|Q9SF38|PP222_ARATH (Pentatricopeptide repeat-containing protein At3g09650, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HCF152 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.4e-08
Identity = 36/131 (27.48%), Postives = 64/131 (48.85%), Query Frame = 0


Query: 54  PHSSSFNSIISFFCRLGNVKFAERILNSMPRFGCSPDIVSYNSLLDGYCGSYQIQKACFL 113
           P   ++ +++S F   G +  A ++L  M R G   + ++YN LL GYC   QI +A  L
Sbjct: 450 PDEVTYTTVVSAFVNAGLMDRARQVLAEMARMGVPANRITYNVLLKGYCKQLQIDRAEDL 509

Query: 114 VNRVRGCELIRPDLVMFNILFNGFAKVYMKNEAFVYLGLM-WKCCLPSVVTYGTFVDMFC 173
           +  +     I PD+V +NI+ +G   +     A  +   M  +   P+ ++Y T +  F 
Sbjct: 510 LREMTEDAGIEPDVVSYNIIIDGCILIDDSAGALAFFNEMRTRGIAPTKISYTTLMKAFA 569

Query: 174 KMGDMEMGNRM 184
             G  ++ NR+
Sbjct: 570 MSGQPKLANRV 580

[Close]

BLAST of Cla97C07G133860 vs. Swiss-Prot
Match: sp|Q3E9F0|PP392_ARATH (Pentatricopeptide repeat-containing protein At5g18475 OS=Arabidopsis thaliana OX=3702 GN=At5g18475 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-08
Identity = 41/140 (29.29%), Postives = 73/140 (52.14%), Query Frame = 0


Query: 2   VKEALQFLAHLRRISRLPTPFTCNRILHSLINSGCGDLSAKLFFHLL-SKGYTPHSSSFN 61
           V E    +  + R+   P+    +  L+ LI+SG  +LS KL  +   + G  P++  FN
Sbjct: 143 VMEMFNLIQVIARVK--PSLNAISTCLNLLIDSGEVNLSRKLLLYAKHNLGLQPNTCIFN 202

Query: 62  SIISFFCRLGNVKFAERILNSMPRFGCS-PDIVSYNSLLDGYCGSYQIQKACFLVNRVRG 121
            ++   C+ G++ FA  ++  M R G S P+ ++Y++L+D      + ++A  L   +  
Sbjct: 203 ILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMIS 262

Query: 122 CELIRPDLVMFNILFNGFAK 140
            E I PD V FN++ NGF +
Sbjct: 263 KEGISPDPVTFNVMINGFCR 280

[Close]

BLAST of Cla97C07G133860 vs. Swiss-Prot
Match: sp|Q9MA50|PPR13_ARATH (Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PDE247 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 8.3e-06
Identity = 39/147 (26.53%), Postives = 72/147 (48.98%), Query Frame = 0


Query: 37  GDLSAKLFFH--LLSKGYTPHSSSFNSIISFFCRLGNVKFAERILNSMPRFGCSPDIVSY 96
           G LS  L+ H  +LS+ +  +    NS+I  +CR G V+FA ++  +M +      +VS+
Sbjct: 220 GALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEK----RTVVSW 279

Query: 97  NSLLDGYCGSYQIQKACFLVNRVRGCELIRPDLVMFNILFNGFAKVYMKNEAFVYLGLMW 156
           NS++ G+  +    ++     +++  +  +PD V F       + V +  E   Y  +M 
Sbjct: 280 NSVIVGFAANGNAHESLVYFRKMQE-KGFKPDAVTFTGALTACSHVGLVEEGLRYFQIM- 339

Query: 157 KC---CLPSVVTYGTFVDMFCKMGDME 179
           KC     P +  YG  VD++ + G +E
Sbjct: 340 KCDYRISPRIEHYGCLVDLYSRAGRLE 360

[Close]

BLAST of Cla97C07G133860 vs. Swiss-Prot
Match: sp|Q9M302|PP270_ARATH (Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX=3702 GN=At3g48810 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.4e-05
Identity = 31/117 (26.50%), Postives = 60/117 (51.28%), Query Frame = 0


Query: 23  TCNRILHSLINSGCGDLSAKLFFHLLSKGYTPHSSSFNSIISFFCRLGNVKFAERILN-- 82
           T N +LH   N+G   ++ +L   ++  G +P   + N II  +C+ G  + A ++L+  
Sbjct: 530 TYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLV 589

Query: 83  SMPRFGCSPDIVSYNSLLDGYCGSYQIQKACFLVNRVRGCELIRPDLVMFNILFNGF 138
           S  R    PD++SY +++ G C S   +    L+ R+    ++ P +  +++L N F
Sbjct: 590 SCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIV-PSIATWSVLINCF 645

[Close]

BLAST of Cla97C07G133860 vs. TAIR10
Match: AT2G01740.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 200.3 bits (508), Expect = 3.1e-51
Identity = 93/181 (51.38%), Postives = 126/181 (69.61%), Query Frame = 0


Query: 1   MVKEALQFLAHLRRISRLPTPFTCNRILHSLINSGCGDLSAKLFFHLLSKGYTPHSSSFN 60
           MV+EALQFL+ LR+ S LP PFTCN+ +H LINS CG LS K   +L+S+GYTPH SSFN
Sbjct: 1   MVREALQFLSRLRKSSNLPDPFTCNKHIHQLINSNCGILSLKFLAYLVSRGYTPHRSSFN 60

Query: 61  SIISFFCRLGNVKFAERILNSMPRFGCSPDIVSYNSLLDGYCGSYQIQKACFLVNRVRGC 120
           S++SF C+LG VKFAE I++SMPRFGC PD++SYNSL+DG+C +  I+ A  ++  +R  
Sbjct: 61  SVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLRAS 120

Query: 121 E--LIRPDLVMFNILFNGFAKVYMKNEAFVYLGLMWKCCLPSVVTYGTFVDMFCKMGDME 180
                               K+ M +E FVY+G+M KCC P+VVTY T++D FCK G+++
Sbjct: 121 HXXXXXXXXXXXXXXXXXXXKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDTFCKSGELQ 180

[Close]

BLAST of Cla97C07G133860 vs. TAIR10
Match: AT3G09650.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 62.8 bits (151), Expect = 7.6e-10
Identity = 36/131 (27.48%), Postives = 64/131 (48.85%), Query Frame = 0


Query: 54  PHSSSFNSIISFFCRLGNVKFAERILNSMPRFGCSPDIVSYNSLLDGYCGSYQIQKACFL 113
           P   ++ +++S F   G +  A ++L  M R G   + ++YN LL GYC   QI +A  L
Sbjct: 450 PDEVTYTTVVSAFVNAGLMDRARQVLAEMARMGVPANRITYNVLLKGYCKQLQIDRAEDL 509

Query: 114 VNRVRGCELIRPDLVMFNILFNGFAKVYMKNEAFVYLGLM-WKCCLPSVVTYGTFVDMFC 173
           +  +     I PD+V +NI+ +G   +     A  +   M  +   P+ ++Y T +  F 
Sbjct: 510 LREMTEDAGIEPDVVSYNIIIDGCILIDDSAGALAFFNEMRTRGIAPTKISYTTLMKAFA 569

Query: 174 KMGDMEMGNRM 184
             G  ++ NR+
Sbjct: 570 MSGQPKLANRV 580

[Close]

BLAST of Cla97C07G133860 vs. TAIR10
Match: AT5G18475.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-09
Identity = 41/140 (29.29%), Postives = 73/140 (52.14%), Query Frame = 0


Query: 2   VKEALQFLAHLRRISRLPTPFTCNRILHSLINSGCGDLSAKLFFHLL-SKGYTPHSSSFN 61
           V E    +  + R+   P+    +  L+ LI+SG  +LS KL  +   + G  P++  FN
Sbjct: 143 VMEMFNLIQVIARVK--PSLNAISTCLNLLIDSGEVNLSRKLLLYAKHNLGLQPNTCIFN 202

Query: 62  SIISFFCRLGNVKFAERILNSMPRFGCS-PDIVSYNSLLDGYCGSYQIQKACFLVNRVRG 121
            ++   C+ G++ FA  ++  M R G S P+ ++Y++L+D      + ++A  L   +  
Sbjct: 203 ILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMIS 262

Query: 122 CELIRPDLVMFNILFNGFAK 140
            E I PD V FN++ NGF +
Sbjct: 263 KEGISPDPVTFNVMINGFCR 280

[Close]

BLAST of Cla97C07G133860 vs. TAIR10
Match: AT1G05750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 4.6e-07
Identity = 39/147 (26.53%), Postives = 72/147 (48.98%), Query Frame = 0


Query: 37  GDLSAKLFFH--LLSKGYTPHSSSFNSIISFFCRLGNVKFAERILNSMPRFGCSPDIVSY 96
           G LS  L+ H  +LS+ +  +    NS+I  +CR G V+FA ++  +M +      +VS+
Sbjct: 220 GALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEK----RTVVSW 279

Query: 97  NSLLDGYCGSYQIQKACFLVNRVRGCELIRPDLVMFNILFNGFAKVYMKNEAFVYLGLMW 156
           NS++ G+  +    ++     +++  +  +PD V F       + V +  E   Y  +M 
Sbjct: 280 NSVIVGFAANGNAHESLVYFRKMQE-KGFKPDAVTFTGALTACSHVGLVEEGLRYFQIM- 339

Query: 157 KC---CLPSVVTYGTFVDMFCKMGDME 179
           KC     P +  YG  VD++ + G +E
Sbjct: 340 KCDYRISPRIEHYGCLVDLYSRAGRLE 360

[Close]

BLAST of Cla97C07G133860 vs. TAIR10
Match: AT3G48810.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 52.8 bits (125), Expect = 7.9e-07
Identity = 31/117 (26.50%), Postives = 60/117 (51.28%), Query Frame = 0


Query: 23  TCNRILHSLINSGCGDLSAKLFFHLLSKGYTPHSSSFNSIISFFCRLGNVKFAERILN-- 82
           T N +LH   N+G   ++ +L   ++  G +P   + N II  +C+ G  + A ++L+  
Sbjct: 530 TYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLV 589

Query: 83  SMPRFGCSPDIVSYNSLLDGYCGSYQIQKACFLVNRVRGCELIRPDLVMFNILFNGF 138
           S  R    PD++SY +++ G C S   +    L+ R+    ++ P +  +++L N F
Sbjct: 590 SCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIV-PSIATWSVLINCF 645

The following BLAST results are available for this feature:

BLAST of Cla97C07G133860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654466.1	5.0e-68	73.08	PREDICTED: pentatricopeptide repeat-containing protein At2g01740 isoform X2 [Cuc...	[more]
XP_016901353.1	7.3e-67	73.63	PREDICTED: pentatricopeptide repeat-containing protein At2g01740 isoform X3 [Cuc...	[more]
XP_011654465.1	4.1e-54	62.09	PREDICTED: pentatricopeptide repeat-containing protein At2g01740 isoform X1 [Cuc...	[more]
XP_010424946.1	1.3e-47	50.28	PREDICTED: pentatricopeptide repeat-containing protein At2g01740-like [Camelina ...	[more]
NP_178283.1	1.7e-47	51.38	Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana] >...	[more]

BLAST of Cla97C07G133860 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DZF8\|A0A1S4DZF8_CUCME	4.8e-67	73.63	pentatricopeptide repeat-containing protein At2g01740 isoform X3 OS=Cucumis melo...	[more]
tr\|A0A178VQM4\|A0A178VQM4_ARATH	1.1e-47	51.38	Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At2g00730 PE=4 ...	[more]
tr\|V4KT02\|V4KT02_EUTSA	1.5e-47	51.93	Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003932mg PE=...	[more]
tr\|D7LLV1\|D7LLV1_ARALL	1.5e-47	51.38	Pentatricopeptide repeat-containing protein OS=Arabidopsis lyrata subsp. lyrata ...	[more]
tr\|A0A1S3BTQ4\|A0A1S3BTQ4_CUCME	9.4e-47	57.69	pentatricopeptide repeat-containing protein At2g01740 isoform X2 OS=Cucumis melo...	[more]

BLAST of Cla97C07G133860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZUA2\|PP141_ARATH	5.5e-50	51.38	Pentatricopeptide repeat-containing protein At2g01740 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9SF38\|PP222_ARATH	1.4e-08	27.48	Pentatricopeptide repeat-containing protein At3g09650, chloroplastic OS=Arabidop...	[more]
sp\|Q3E9F0\|PP392_ARATH	2.3e-08	29.29	Pentatricopeptide repeat-containing protein At5g18475 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9MA50\|PPR13_ARATH	8.3e-06	26.53	Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidop...	[more]
sp\|Q9M302\|PP270_ARATH	1.4e-05	26.50	Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cla97C07G133860 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01740.1	3.1e-51	51.38	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G09650.1	7.6e-10	27.48	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G18475.1	1.3e-09	29.29	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G05750.1	4.6e-07	26.53	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G48810.1	7.9e-07	26.50	Pentatricopeptide repeat (PPR) superfamily protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C07G133860.1	Cla97C07G133860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 410..430
None	No IPR available	PANTHER	PTHR44149	FAMILY NOT NAMED	coord: 4..117 coord: 399..537
None	No IPR available	PANTHER	PTHR44149:SF3	SUBFAMILY NOT NAMED	coord: 272..396 coord: 399..537
None	No IPR available	PANTHER	PTHR44149:SF3	SUBFAMILY NOT NAMED	coord: 4..117
None	No IPR available	PANTHER	PTHR44149	FAMILY NOT NAMED	coord: 157..338
None	No IPR available	PANTHER	PTHR44149:SF3	SUBFAMILY NOT NAMED	coord: 157..338
None	No IPR available	PANTHER	PTHR44149	FAMILY NOT NAMED	coord: 272..396
None	No IPR available	PANTHER	PTHR44149:SF3	SUBFAMILY NOT NAMED	coord: 116..296
None	No IPR available	PANTHER	PTHR44149	FAMILY NOT NAMED	coord: 116..296
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 464..537 e-value: 1.8E-16 score: 62.2 coord: 398..463 e-value: 1.7E-15 score: 59.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 277..397 e-value: 9.8E-22 score: 79.1
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 156..259 e-value: 3.8E-33 score: 117.3
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 1..155 e-value: 1.8E-28 score: 101.8
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 162..192 e-value: 0.0015 score: 18.5
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 58..91 e-value: 7.2E-8 score: 30.1 coord: 197..231 e-value: 3.7E-9 score: 34.2 coord: 232..266 e-value: 5.1E-11 score: 40.0 coord: 339..371 e-value: 2.1E-4 score: 19.2 coord: 437..470 e-value: 3.4E-5 score: 21.7 coord: 403..435 e-value: 1.2E-9 score: 35.8 coord: 162..195 e-value: 1.0E-6 score: 26.5 coord: 473..506 e-value: 1.9E-7 score: 28.8
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 55..102 e-value: 1.4E-11 score: 44.3 coord: 264..313 e-value: 7.0E-8 score: 32.4 coord: 334..383 e-value: 2.7E-9 score: 37.0 coord: 400..448 e-value: 1.2E-9 score: 38.1 coord: 194..243 e-value: 1.8E-17 score: 63.1 coord: 476..516 e-value: 7.7E-10 score: 38.7
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 400..434 score: 12.781
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 370..396 score: 7.004
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 160..194 score: 11.159
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 126..156 score: 5.788
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 55..89 score: 11.093
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 435..469 score: 9.471
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 90..124 score: 7.925
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 470..504 score: 12.364
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 505..539 score: 9.536
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 230..264 score: 13.581
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 20..54 score: 8.166
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 265..299 score: 8.21
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 335..369 score: 9.131
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 195..229 score: 12.299
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 300..334 score: 9.109

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C07G133860	Cla002193	Watermelon (97103) v1	wmwmbB179
Cla97C07G133860	Csa5G021290	Cucumber (Chinese Long) v2	cuwmbB396
Cla97C07G133860	MELO3C016659	Melon (DHL92) v3.5.1	mewmbB496
Cla97C07G133860	ClCG07G005540	Watermelon (Charleston Gray)	wcgwmbB307
Cla97C07G133860	CSPI05G00530	Wild cucumber (PI 183967)	cpiwmbB417
Cla97C07G133860	CmaCh04G000780	Cucurbita maxima (Rimu)	cmawmbB781
Cla97C07G133860	CmoCh04G000750	Cucurbita moschata (Rifu)	cmowmbB755
Cla97C07G133860	Lsi04G010990	Bottle gourd (USVL1VR-Ls)	lsiwmbB297
Cla97C07G133860	CsGy5G010770	Cucumber (Gy14) v2	cgybwmbB379
Cla97C07G133860	MELO3C016659.2	Melon (DHL92) v3.6.1	medwmbB489
Cla97C07G133860	Carg22022	Silver-seed gourd	carwmbB0183
Cla97C07G133860	Carg27443	Silver-seed gourd	carwmbB1026
Cla97C07G133860	CsaV3_5G014350	Cucumber (Chinese Long) v3	cucwmbB414
Cla97C07G133860	Bhi07G000365	Wax gourd	wgowmbB538

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C07G133860	Silver-seed gourd	carwmbB0700
Cla97C07G133860	Cucurbita maxima (Rimu)	cmawmbB780
Cla97C07G133860	Cucurbita moschata (Rifu)	cmowmbB754
Cla97C07G133860	Melon (DHL92) v3.6.1	medwmbB029
Cla97C07G133860	Melon (DHL92) v3.5.1	mewmbB032
Cla97C07G133860	Watermelon (Charleston Gray)	wcgwmbB120
Cla97C07G133860	Watermelon (97103) v1	wmwmbB278
Cla97C07G133860	Watermelon (97103) v1	wmwmbB167
Cla97C07G133860	Wax gourd	wgowmbB105