CsaV3_5G006270 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G006270
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionPentatricopeptide repeat-containing protein
Locationchr5 : 4146565 .. 4148607 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTCCGATGCCAAATCCCTCCTTATTTCCTTCATTTCTTCCGATCGCCAACACGAACTCCATAAATTGATTCTCCATCCCACTCGTGATCTTCCCGAGCCGTCCAAAGAGCTACTGGATACCTCCATTGGCGCCTACGTGCAAATGGACCAGCCCCATCTTGCTACTCAGATCTTCAACAAGATGAAGCGGCTTAACTACCGGCCGAATTTGCTTACCTGCAACACATTGATGAATTCCTTGGTAAGATACCCGTCTTCGAGTTCTATTCTATTGGCTAGACAAGTATTAAAGGATTCGATTAAACTCGGCGTGGTACCGAATACTAATAGCTTCAATATTTTGATATATGGGTATTGCTTAGAGAGTAAAGTTAAGGATGCACTGGATTGGGTGAATAAAATGAGTGAGTTTGGTTGTGTACCGGATACTGTGAGTTATAATACGATATTGGATGCATTGTTAAAGAGGAGACTGTTACAAGAGGCCCGGGACTTGCTGTTGGACATGAAAAGTAAAGGGCTGTCGCCAAATAAGCATACGTATAATATGTTGGTTTGTGGATATTGCAGACTGGGGTTACTGAAGGAGGCTACCAAGGTGATCGAAATAATGACGCGTAATAATTTGTTGCCTACTGTTTGGACTTATAATATGTTGGTTAATGGGTTTTGTAATGATGGTAAGATTGATGAGGCTTTTAGGATAAGAGATGAGATGGAGAAAATGAATGTCTTGCCTGACGTGGTTACCTATAACACATTGATTGATGGGTGTTCCCAGTGGCGGGATAGTTCTGAGGTATATAGTTTGATTGAAGAAATGGATAAGAAAGGAGTGAAGTGTAATGCAGTTACTTACAATATAATACTGAAATGGATGTGTAAGAAAGGGAATATGACTGAAGCAACCACTACTCTTGATAAGATGGAAGAAAATGGACTCTCCCCTGATTGTGTGACGTACAATACTCTAATAGGTGCTTATTGTAAGGCTGGAAAAATGGGAAAAGCGTTTAGAATGATGGATGAAATGACTAGTAAAGGTTTGAAAATTGATACTTGGACCTTGAATACGATTCTCCATTGTCTCTGTGTGGAGAAAAAACTTGATGAGGCATACAACTTATTATGCAGTGCTAGTAAGCGGGGCTATATTCTTGATGAGGTTAGCTATGGTATTCTGATTTTGGGTTACTTCAAAGATGAAAAGGGAGACAGAGCCTTGAATCTTTGGGATGAAATGAAGGAAAGACAGATTATGCCAAGCACCATCACCTATAATTCTGTGATTGGAGGACTATGTCAGTCTAGGAAAGTTGATCAAGCTATAGATAAGCTGAATGAGATGCTTGAGAATGGATTAGTTCCTGATGAAACTACTTACAACATAATTATCCATGGCTTTTGTTTGGAAGGGAATGTGGAAAAAGCATTCCAATTCCACAACGAAATGATTGAGAATTTATTCAAGCCAGATGTCTATACTTGTAATATTCTTCTTCGTGGGTTATGCAGAGAGGGTATGCTAGAGAAGGCTCTTAAGCTGTTCAATACTTTGGTTTCTAAAGGCAAAGACATTGATGTAGTTACGTATAATACCATAATATCTAGTCTGTGCAAAGAAGGGAAATTCGAGAATGCTTATGATCTTCTTACTGAAATGGAAGCGAAAAAGTTAGGTCCTGATCAATATACTTACAAAGTGATTATTGCTGCTCTAACAGATGCGGGAAGGATTAAGGAGGCGGAGGAATTTACATTGAAAATGGTTGAATCGGGAATAGTGCATGATCAGAATTTGAAATTGGGCAAAGGGCAGAATGTGCTAACCTCTGAAGTTTCGGAACATTTTGATTTCAAGTCTATAGCTTACTCGGATCAGATCAATGAACTATGTAATCAACATAAGTATAAGGATGCAATGCACCTATTTGTCGAAGTTACAAAGGAAGGTGTTGCTTTAAACAAATACACTTATCTAAATTTGATGGAGGGGCTGATTAAGAGGCGTAAAAGCACATCAAAGGCCAGCCGGTGA

mRNA sequence

ATGTTCTCCGATGCCAAATCCCTCCTTATTTCCTTCATTTCTTCCGATCGCCAACACGAACTCCATAAATTGATTCTCCATCCCACTCGTGATCTTCCCGAGCCGTCCAAAGAGCTACTGGATACCTCCATTGGCGCCTACGTGCAAATGGACCAGCCCCATCTTGCTACTCAGATCTTCAACAAGATGAAGCGGCTTAACTACCGGCCGAATTTGCTTACCTGCAACACATTGATGAATTCCTTGGTAAGATACCCGTCTTCGAGTTCTATTCTATTGGCTAGACAAGTATTAAAGGATTCGATTAAACTCGGCGTGGTACCGAATACTAATAGCTTCAATATTTTGATATATGGGTATTGCTTAGAGAGTAAAGTTAAGGATGCACTGGATTGGGTGAATAAAATGAGTGAGTTTGGTTGTGTACCGGATACTGTGAGTTATAATACGATATTGGATGCATTGTTAAAGAGGAGACTGTTACAAGAGGCCCGGGACTTGCTGTTGGACATGAAAAGTAAAGGGCTGTCGCCAAATAAGCATACGTATAATATGTTGGTTTGTGGATATTGCAGACTGGGGTTACTGAAGGAGGCTACCAAGGTGATCGAAATAATGACGCGTAATAATTTGTTGCCTACTGTTTGGACTTATAATATGTTGGTTAATGGGTTTTGTAATGATGGTAAGATTGATGAGGCTTTTAGGATAAGAGATGAGATGGAGAAAATGAATGTCTTGCCTGACGTGGTTACCTATAACACATTGATTGATGGGTGTTCCCAGTGGCGGGATAGTTCTGAGGTATATAGTTTGATTGAAGAAATGGATAAGAAAGGAGTGAAGTGTAATGCAGTTACTTACAATATAATACTGAAATGGATGTGTAAGAAAGGGAATATGACTGAAGCAACCACTACTCTTGATAAGATGGAAGAAAATGGACTCTCCCCTGATTGTGTGACGTACAATACTCTAATAGGTGCTTATTGTAAGGCTGGAAAAATGGGAAAAGCGTTTAGAATGATGGATGAAATGACTAGTAAAGGTTTGAAAATTGATACTTGGACCTTGAATACGATTCTCCATTGTCTCTGTGTGGAGAAAAAACTTGATGAGGCATACAACTTATTATGCAGTGCTAGTAAGCGGGGCTATATTCTTGATGAGGTTAGCTATGGTATTCTGATTTTGGGTTACTTCAAAGATGAAAAGGGAGACAGAGCCTTGAATCTTTGGGATGAAATGAAGGAAAGACAGATTATGCCAAGCACCATCACCTATAATTCTGTGATTGGAGGACTATGTCAGTCTAGGAAAGTTGATCAAGCTATAGATAAGCTGAATGAGATGCTTGAGAATGGATTAGTTCCTGATGAAACTACTTACAACATAATTATCCATGGCTTTTGTTTGGAAGGGAATGTGGAAAAAGCATTCCAATTCCACAACGAAATGATTGAGAATTTATTCAAGCCAGATGTCTATACTTGTAATATTCTTCTTCGTGGGTTATGCAGAGAGGGTATGCTAGAGAAGGCTCTTAAGCTGTTCAATACTTTGGTTTCTAAAGGCAAAGACATTGATGTAGTTACGTATAATACCATAATATCTAGTCTGTGCAAAGAAGGGAAATTCGAGAATGCTTATGATCTTCTTACTGAAATGGAAGCGAAAAAGTTAGGTCCTGATCAATATACTTACAAAGTGATTATTGCTGCTCTAACAGATGCGGGAAGGATTAAGGAGGCGGAGGAATTTACATTGAAAATGGTTGAATCGGGAATAGTGCATGATCAGAATTTGAAATTGGGCAAAGGGCAGAATGTGCTAACCTCTGAAGTTTCGGAACATTTTGATTTCAAGTCTATAGCTTACTCGGATCAGATCAATGAACTATGTAATCAACATAAGTATAAGGATGCAATGCACCTATTTGTCGAAGTTACAAAGGAAGGTGTTGCTTTAAACAAATACACTTATCTAAATTTGATGGAGGGGCTGATTAAGAGGCGTAAAAGCACATCAAAGGCCAGCCGGTGA

Coding sequence (CDS)

ATGTTCTCCGATGCCAAATCCCTCCTTATTTCCTTCATTTCTTCCGATCGCCAACACGAACTCCATAAATTGATTCTCCATCCCACTCGTGATCTTCCCGAGCCGTCCAAAGAGCTACTGGATACCTCCATTGGCGCCTACGTGCAAATGGACCAGCCCCATCTTGCTACTCAGATCTTCAACAAGATGAAGCGGCTTAACTACCGGCCGAATTTGCTTACCTGCAACACATTGATGAATTCCTTGGTAAGATACCCGTCTTCGAGTTCTATTCTATTGGCTAGACAAGTATTAAAGGATTCGATTAAACTCGGCGTGGTACCGAATACTAATAGCTTCAATATTTTGATATATGGGTATTGCTTAGAGAGTAAAGTTAAGGATGCACTGGATTGGGTGAATAAAATGAGTGAGTTTGGTTGTGTACCGGATACTGTGAGTTATAATACGATATTGGATGCATTGTTAAAGAGGAGACTGTTACAAGAGGCCCGGGACTTGCTGTTGGACATGAAAAGTAAAGGGCTGTCGCCAAATAAGCATACGTATAATATGTTGGTTTGTGGATATTGCAGACTGGGGTTACTGAAGGAGGCTACCAAGGTGATCGAAATAATGACGCGTAATAATTTGTTGCCTACTGTTTGGACTTATAATATGTTGGTTAATGGGTTTTGTAATGATGGTAAGATTGATGAGGCTTTTAGGATAAGAGATGAGATGGAGAAAATGAATGTCTTGCCTGACGTGGTTACCTATAACACATTGATTGATGGGTGTTCCCAGTGGCGGGATAGTTCTGAGGTATATAGTTTGATTGAAGAAATGGATAAGAAAGGAGTGAAGTGTAATGCAGTTACTTACAATATAATACTGAAATGGATGTGTAAGAAAGGGAATATGACTGAAGCAACCACTACTCTTGATAAGATGGAAGAAAATGGACTCTCCCCTGATTGTGTGACGTACAATACTCTAATAGGTGCTTATTGTAAGGCTGGAAAAATGGGAAAAGCGTTTAGAATGATGGATGAAATGACTAGTAAAGGTTTGAAAATTGATACTTGGACCTTGAATACGATTCTCCATTGTCTCTGTGTGGAGAAAAAACTTGATGAGGCATACAACTTATTATGCAGTGCTAGTAAGCGGGGCTATATTCTTGATGAGGTTAGCTATGGTATTCTGATTTTGGGTTACTTCAAAGATGAAAAGGGAGACAGAGCCTTGAATCTTTGGGATGAAATGAAGGAAAGACAGATTATGCCAAGCACCATCACCTATAATTCTGTGATTGGAGGACTATGTCAGTCTAGGAAAGTTGATCAAGCTATAGATAAGCTGAATGAGATGCTTGAGAATGGATTAGTTCCTGATGAAACTACTTACAACATAATTATCCATGGCTTTTGTTTGGAAGGGAATGTGGAAAAAGCATTCCAATTCCACAACGAAATGATTGAGAATTTATTCAAGCCAGATGTCTATACTTGTAATATTCTTCTTCGTGGGTTATGCAGAGAGGGTATGCTAGAGAAGGCTCTTAAGCTGTTCAATACTTTGGTTTCTAAAGGCAAAGACATTGATGTAGTTACGTATAATACCATAATATCTAGTCTGTGCAAAGAAGGGAAATTCGAGAATGCTTATGATCTTCTTACTGAAATGGAAGCGAAAAAGTTAGGTCCTGATCAATATACTTACAAAGTGATTATTGCTGCTCTAACAGATGCGGGAAGGATTAAGGAGGCGGAGGAATTTACATTGAAAATGGTTGAATCGGGAATAGTGCATGATCAGAATTTGAAATTGGGCAAAGGGCAGAATGTGCTAACCTCTGAAGTTTCGGAACATTTTGATTTCAAGTCTATAGCTTACTCGGATCAGATCAATGAACTATGTAATCAACATAAGTATAAGGATGCAATGCACCTATTTGTCGAAGTTACAAAGGAAGGTGTTGCTTTAAACAAATACACTTATCTAAATTTGATGGAGGGGCTGATTAAGAGGCGTAAAAGCACATCAAAGGCCAGCCGGTGA

Protein sequence

MFSDAKSLLISFISSDRQHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGIVHDQNLKLGKGQNVLTSEVSEHFDFKSIAYSDQINELCNQHKYKDAMHLFVEVTKEGVALNKYTYLNLMEGLIKRRKSTSKASR
Homology
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BLAST of CsaV3_5G006270 vs. NCBI nr
Match: XP_004143692.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g16880 [Cucumis sativus])

HSP 1 Score: 269.2 bits (687), Expect = 3.7e-68
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MFSDAKSLLISFISSDRQHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIF 60
           MFSDAKSLLISFISSDRQHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIF
Sbjct: 104 MFSDAKSLLISFISSDRQHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIF 163

Query: 61  NKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGY 120
           NKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGY
Sbjct: 164 NKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGY 223

Query: 121 CLESKVKDALDWVNK 136
           CLESKVKDALDWVNK
Sbjct: 224 CLESKVKDALDWVNK 238

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BLAST of CsaV3_5G006270 vs. NCBI nr
Match: XP_008445857.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g16880 [Cucumis melo] >XP_008445858.1 PREDICTED: pentatricopeptide repeat-containing protein At2g16880 [Cucumis melo])

HSP 1 Score: 242.3 bits (617), Expect = 4.9e-60
Identity = 123/131 (93.89%), Postives = 125/131 (95.42%), Query Frame = 0 

Query: 1   MFSDAKSLLISFISSDRQHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIF 60
           MF DAKSLLISFISSDRQHELHKLILHPTRDLPEPSK L+DTSIGAYVQM QPHLATQIF
Sbjct: 104 MFYDAKSLLISFISSDRQHELHKLILHPTRDLPEPSKALMDTSIGAYVQMRQPHLATQIF 163

Query: 61  NKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGY 120
           NKMKRLNYRPNLLTC TLMNSLVRYPSSSSILLARQV KDSIKLGVVP+TNS NILIYGY
Sbjct: 164 NKMKRLNYRPNLLTCKTLMNSLVRYPSSSSILLARQVFKDSIKLGVVPDTNSVNILIYGY 223

Query: 121 CLESKVKDALD 132
           CLESKVKDALD
Sbjct: 224 CLESKVKDALD 234

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BLAST of CsaV3_5G006270 vs. NCBI nr
Match: XP_023525433.1 (pentatricopeptide repeat-containing protein At2g16880 [Cucurbita pepo subsp. pepo] >XP_023525440.1 pentatricopeptide repeat-containing protein At2g16880 [Cucurbita pepo subsp. pepo] >XP_023525450.1 pentatricopeptide repeat-containing protein At2g16880 [Cucurbita pepo subsp. pepo] >XP_023525458.1 pentatricopeptide repeat-containing protein At2g16880 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.8 bits (595), Expect = 1.7e-57
Identity = 115/134 (85.82%), Postives = 125/134 (93.28%), Query Frame = 0 

Query: 2   FSDAKSLLISFISSDRQHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFN 61
           FSDAKSLL+SFI++DRQHELHKLILHPTRDLP PSK L+DTSIGAYVQM +PHLA QIF 
Sbjct: 98  FSDAKSLLVSFIANDRQHELHKLILHPTRDLPRPSKALMDTSIGAYVQMGKPHLAAQIFK 157

Query: 62  KMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYC 121
           KMKRLNYRPNLLTCNTL+NSLVRYPSS+SILL+R+V KDS+KLGVV NTNSFNILIYGYC
Sbjct: 158 KMKRLNYRPNLLTCNTLLNSLVRYPSSNSILLSREVFKDSVKLGVVLNTNSFNILIYGYC 217

Query: 122 LESKVKDALDWVNK 136
           LESK KDALD VNK
Sbjct: 218 LESKFKDALDLVNK 231

[Close]
BLAST of CsaV3_5G006270 vs. NCBI nr
Match: XP_022942538.1 (pentatricopeptide repeat-containing protein At2g16880 [Cucurbita moschata] >XP_022942539.1 pentatricopeptide repeat-containing protein At2g16880 [Cucurbita moschata] >XP_022942540.1 pentatricopeptide repeat-containing protein At2g16880 [Cucurbita moschata] >XP_022942542.1 pentatricopeptide repeat-containing protein At2g16880 [Cucurbita moschata])

HSP 1 Score: 231.5 bits (589), Expect = 8.6e-57
Identity = 114/134 (85.07%), Postives = 124/134 (92.54%), Query Frame = 0 

Query: 2   FSDAKSLLISFISSDRQHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFN 61
           FSDAKSLL+SFI++DRQHELHKLILHPTRDLP PSK L+DTSIGAYVQM +PHLA QIF 
Sbjct: 98  FSDAKSLLVSFIANDRQHELHKLILHPTRDLPRPSKALMDTSIGAYVQMGKPHLAAQIFK 157

Query: 62  KMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYC 121
           KMKRLNYRPNLLTCNTL+NSLVRYPS +SILL+R+V KDS+KLGVV NTNSFNILIYGYC
Sbjct: 158 KMKRLNYRPNLLTCNTLLNSLVRYPSLNSILLSREVFKDSVKLGVVLNTNSFNILIYGYC 217

Query: 122 LESKVKDALDWVNK 136
           LESK KDALD VNK
Sbjct: 218 LESKFKDALDLVNK 231

[Close]
BLAST of CsaV3_5G006270 vs. NCBI nr
Match: XP_022983777.1 (pentatricopeptide repeat-containing protein At2g16880 [Cucurbita maxima] >XP_022983785.1 pentatricopeptide repeat-containing protein At2g16880 [Cucurbita maxima] >XP_022983794.1 pentatricopeptide repeat-containing protein At2g16880 [Cucurbita maxima] >XP_022983803.1 pentatricopeptide repeat-containing protein At2g16880 [Cucurbita maxima] >XP_022983811.1 pentatricopeptide repeat-containing protein At2g16880 [Cucurbita maxima])

HSP 1 Score: 231.1 bits (588), Expect = 1.1e-56
Identity = 114/134 (85.07%), Postives = 123/134 (91.79%), Query Frame = 0 

Query: 2   FSDAKSLLISFISSDRQHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFN 61
           FSDAKSLL+SFI+ DRQHELHKLILHPTRDLP PSK L+DTSIGAYVQM +PHLA QIF 
Sbjct: 98  FSDAKSLLVSFIADDRQHELHKLILHPTRDLPRPSKALMDTSIGAYVQMGKPHLAAQIFK 157

Query: 62  KMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYC 121
           KMKRLNYRPNLLTCNTL+NSLVRYPS +SILL+R+V KDS+KLGVV NTNSFNILIYGYC
Sbjct: 158 KMKRLNYRPNLLTCNTLLNSLVRYPSLNSILLSREVFKDSVKLGVVLNTNSFNILIYGYC 217

Query: 122 LESKVKDALDWVNK 136
           LESK KDALD VNK
Sbjct: 218 LESKFKDALDLVNK 231

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BLAST of CsaV3_5G006270 vs. TAIR10
Match: AT2G16880.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 136.0 bits (341), Expect = 8.9e-32
Identity = 72/136 (52.94%), Postives = 94/136 (69.12%), Query Frame = 0 

Query: 2   FSDAKSLLISFI-SSDRQHELHKLILHPTRDL-PEPSKELLDTSIGAYVQMDQPHLATQI 61
           F+DAKSLL+S+I +SD    L   +LHP   L P PSK L D ++ AY+   +PH+A QI
Sbjct: 94  FADAKSLLVSYIRTSDASLSLCNSLLHPNLHLSPPPSKALFDIALSAYLHEGKPHVALQI 153

Query: 62  FNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYG 121
           F KM RL  +PNLLTCNTL+  LVRYPSS SI  AR+V  D +K+GV  N  +FN+L+ G
Sbjct: 154 FQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLNVQTFNVLVNG 213

Query: 122 YCLESKVKDALDWVNK 136
           YCLE K++DAL  + +
Sbjct: 214 YCLEGKLEDALGMLER 229

[Close]
BLAST of CsaV3_5G006270 vs. TAIR10
Match: AT5G25630.2 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 46.2 bits (108), Expect = 9.3e-05
Identity = 30/94 (31.91%), Postives = 47/94 (50.00%), Query Frame = 0 

Query: 44  IGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMN--SLVRYPSSSSILLARQVLKDS 103
           I A+ +      A Q   KMK L   P   T NTL+    +   P  SS LL   + + +
Sbjct: 122 INAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGN 181

Query: 104 IKLGVVPNTNSFNILIYGYCLESKVKDALDWVNK 136
           + +G  PN  +FN+L+  +C + KV++A + V K
Sbjct: 182 VDVG--PNIRTFNVLVQAWCKKKKVEEAWEVVKK 213

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BLAST of CsaV3_5G006270 vs. Swiss-Prot
Match: sp|Q9ZVX5|PP156_ARATH (Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana OX=3702 GN=At2g16880 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.6e-30
Identity = 72/136 (52.94%), Postives = 94/136 (69.12%), Query Frame = 0 

Query: 2   FSDAKSLLISFI-SSDRQHELHKLILHPTRDL-PEPSKELLDTSIGAYVQMDQPHLATQI 61
           F+DAKSLL+S+I +SD    L   +LHP   L P PSK L D ++ AY+   +PH+A QI
Sbjct: 94  FADAKSLLVSYIRTSDASLSLCNSLLHPNLHLSPPPSKALFDIALSAYLHEGKPHVALQI 153

Query: 62  FNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYG 121
           F KM RL  +PNLLTCNTL+  LVRYPSS SI  AR+V  D +K+GV  N  +FN+L+ G
Sbjct: 154 FQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLNVQTFNVLVNG 213

Query: 122 YCLESKVKDALDWVNK 136
           YCLE K++DAL  + +
Sbjct: 214 YCLEGKLEDALGMLER 229

[Close]
BLAST of CsaV3_5G006270 vs. TrEMBL
Match: tr|A0A1S3BD66|A0A1S3BD66_CUCME (pentatricopeptide repeat-containing protein At2g16880 OS=Cucumis melo OX=3656 GN=LOC103488749 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.2e-60
Identity = 123/131 (93.89%), Postives = 125/131 (95.42%), Query Frame = 0 

Query: 1   MFSDAKSLLISFISSDRQHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIF 60
           MF DAKSLLISFISSDRQHELHKLILHPTRDLPEPSK L+DTSIGAYVQM QPHLATQIF
Sbjct: 104 MFYDAKSLLISFISSDRQHELHKLILHPTRDLPEPSKALMDTSIGAYVQMRQPHLATQIF 163

Query: 61  NKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGY 120
           NKMKRLNYRPNLLTC TLMNSLVRYPSSSSILLARQV KDSIKLGVVP+TNS NILIYGY
Sbjct: 164 NKMKRLNYRPNLLTCKTLMNSLVRYPSSSSILLARQVFKDSIKLGVVPDTNSVNILIYGY 223

Query: 121 CLESKVKDALD 132
           CLESKVKDALD
Sbjct: 224 CLESKVKDALD 234

[Close]
BLAST of CsaV3_5G006270 vs. TrEMBL
Match: tr|A0A2N9IKA1|A0A2N9IKA1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52345 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.4e-47
Identity = 96/134 (71.64%), Postives = 117/134 (87.31%), Query Frame = 0 

Query: 2   FSDAKSLLISFISSDRQHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFN 61
           FSDAKSLL+SFI+SDRQH+LH+LILHP R++P+PSK LLDTSIGAYVQ ++PHLA QIF 
Sbjct: 98  FSDAKSLLVSFIASDRQHQLHRLILHPIRNIPKPSKTLLDTSIGAYVQSNKPHLAAQIFT 157

Query: 62  KMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYC 121
           KMKRL   PNLLTCNTL+N+LVR+PSS SI L R++ KDS+KLGV  NTNS NI+IYGYC
Sbjct: 158 KMKRLRLAPNLLTCNTLLNALVRHPSSYSISLCRKIFKDSVKLGVNLNTNSLNIMIYGYC 217

Query: 122 LESKVKDALDWVNK 136
           LE+K ++AL+ +NK
Sbjct: 218 LENKFREALELLNK 231

[Close]
BLAST of CsaV3_5G006270 vs. TrEMBL
Match: tr|A0A2I4FAP2|A0A2I4FAP2_9ROSI (pentatricopeptide repeat-containing protein At2g16880 OS=Juglans regia OX=51240 GN=LOC108997070 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 5.9e-46
Identity = 94/132 (71.21%), Postives = 113/132 (85.61%), Query Frame = 0 

Query: 2   FSDAKSLLISFISSDRQHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFN 61
           FSDAKSLL+SFI+SDRQH+LH+LILHP+ ++P+P + LLDTSIGAYVQ+ QPHLA QIF 
Sbjct: 96  FSDAKSLLVSFITSDRQHQLHRLILHPSPEVPKPCRALLDTSIGAYVQLKQPHLAAQIFK 155

Query: 62  KMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYC 121
           KMKRL   P LLTCNTL+N+LVR+PSS SI L ++V  D++KLGV PNTNSFNILIYGYC
Sbjct: 156 KMKRLRLPPKLLTCNTLLNALVRHPSSYSIALCKEVFNDAVKLGVKPNTNSFNILIYGYC 215

Query: 122 LESKVKDALDWV 134
           LE+K  +ALD V
Sbjct: 216 LENKFGEALDLV 227

[Close]
BLAST of CsaV3_5G006270 vs. TrEMBL
Match: tr|A0A2P4K7P8|A0A2P4K7P8_QUESU (Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_60436 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 6.5e-45
Identity = 95/134 (70.90%), Postives = 110/134 (82.09%), Query Frame = 0 

Query: 2   FSDAKSLLISFISSDRQHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFN 61
           FSDAKSLL+SFI+SDR HELH+ +LHP R  P+PSK +LDTSIGAYVQ  QPHLA QIF+
Sbjct: 89  FSDAKSLLVSFIASDRHHELHRFLLHPPRLAPKPSKAVLDTSIGAYVQSKQPHLAAQIFH 148

Query: 62  KMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYC 121
           KMKRL   P LLTCNTL+N+LVR+PS+ SI L R V KD++KLGV  NTNSFNI+IYGYC
Sbjct: 149 KMKRLRLAPKLLTCNTLLNALVRHPSTYSISLCRAVFKDAVKLGVNLNTNSFNIMIYGYC 208

Query: 122 LESKVKDALDWVNK 136
           LE+K  DAL  VNK
Sbjct: 209 LENKFSDALGLVNK 222

[Close]
BLAST of CsaV3_5G006270 vs. TrEMBL
Match: tr|A0A1U8B8H9|A0A1U8B8H9_NELNU (pentatricopeptide repeat-containing protein At2g16880 OS=Nelumbo nucifera OX=4432 GN=LOC104608342 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.0e-41
Identity = 84/134 (62.69%), Postives = 109/134 (81.34%), Query Frame = 0 

Query: 2   FSDAKSLLISFISSDRQHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFN 61
           FSDAKSLL+SFI+SDR H+LH  +LHP R  P P+K LLDT++GAYVQ  + HLA QIF 
Sbjct: 103 FSDAKSLLLSFIASDRFHQLHHSLLHPPRSFPPPTKALLDTAVGAYVQSQKVHLAVQIFK 162

Query: 62  KMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYC 121
           KMKRL+ RP+LLTCNTL+NSLVRYPSS SI +++++  D+I+LGV PNT +FNI+IYGYC
Sbjct: 163 KMKRLHLRPSLLTCNTLLNSLVRYPSSHSIPMSQEIFNDAIRLGVTPNTKTFNIMIYGYC 222

Query: 122 LESKVKDALDWVNK 136
            + + KDA++  N+
Sbjct: 223 SQFRFKDAMELFNR 236

The following BLAST results are available for this feature:
BLAST of CsaV3_5G006270 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004143692.13.7e-68100.00PREDICTED: pentatricopeptide repeat-containing protein At2g16880 [Cucumis sativu... [more]
XP_008445857.14.9e-6093.89PREDICTED: pentatricopeptide repeat-containing protein At2g16880 [Cucumis melo] ... [more]
XP_023525433.11.7e-5785.82pentatricopeptide repeat-containing protein At2g16880 [Cucurbita pepo subsp. pep... [more]
XP_022942538.18.6e-5785.07pentatricopeptide repeat-containing protein At2g16880 [Cucurbita moschata] >XP_0... [more]
XP_022983777.11.1e-5685.07pentatricopeptide repeat-containing protein At2g16880 [Cucurbita maxima] >XP_022... [more]
BLAST of CsaV3_5G006270 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G16880.18.9e-3252.94Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G25630.29.3e-0531.91Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of CsaV3_5G006270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9ZVX5|PP156_ARATH1.6e-3052.94Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana OX... [more]
BLAST of CsaV3_5G006270 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BD66|A0A1S3BD66_CUCME3.2e-6093.89pentatricopeptide repeat-containing protein At2g16880 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A2N9IKA1|A0A2N9IKA1_FAGSY2.4e-4771.64Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52345 PE=4 SV=1[more]
tr|A0A2I4FAP2|A0A2I4FAP2_9ROSI5.9e-4671.21pentatricopeptide repeat-containing protein At2g16880 OS=Juglans regia OX=51240 ... [more]
tr|A0A2P4K7P8|A0A2P4K7P8_QUESU6.5e-4570.90Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_6... [more]
tr|A0A1U8B8H9|A0A1U8B8H9_NELNU2.0e-4162.69pentatricopeptide repeat-containing protein At2g16880 OS=Nelumbo nucifera OX=443... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G006270.1CsaV3_5G006270.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 105..136
e-value: 2.0E-7
score: 30.5
coord: 279..312
e-value: 4.8E-8
score: 32.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 391..424
e-value: 1.4E-4
score: 19.8
coord: 286..320
e-value: 1.1E-8
score: 32.7
coord: 112..145
e-value: 7.3E-9
score: 33.3
coord: 321..355
e-value: 8.9E-11
score: 39.3
coord: 566..599
e-value: 7.4E-4
score: 17.5
coord: 251..285
e-value: 5.4E-8
score: 30.5
coord: 496..525
e-value: 5.5E-8
score: 30.5
coord: 357..389
e-value: 0.0013
score: 16.8
coord: 531..564
e-value: 3.6E-9
score: 34.2
coord: 146..179
e-value: 1.6E-7
score: 29.1
coord: 426..460
e-value: 3.1E-9
score: 34.4
coord: 181..214
e-value: 3.2E-6
score: 25.0
coord: 217..250
e-value: 5.9E-9
score: 33.5
coord: 462..495
e-value: 1.1E-8
score: 32.8
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 389..437
e-value: 7.5E-14
score: 51.6
coord: 318..366
e-value: 8.1E-16
score: 57.8
coord: 213..261
e-value: 4.8E-17
score: 61.8
coord: 458..507
e-value: 3.3E-17
score: 62.3
coord: 529..575
e-value: 1.0E-15
score: 57.5
coord: 143..192
e-value: 1.3E-16
score: 60.4
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 45..81
e-value: 0.0013
score: 18.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 389..423
score: 10.972
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 71..108
score: 6.851
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 109..143
score: 11.027
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 459..493
score: 12.452
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 622..656
score: 7.706
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 179..213
score: 11.904
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 319..353
score: 13.263
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 657..680
score: 5.294
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 424..458
score: 12.364
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 284..318
score: 12.057
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 354..388
score: 9.043
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 214..248
score: 12.726
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 249..283
score: 11.312
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 529..563
score: 13.143
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 564..598
score: 9.942
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 494..528
score: 11.685
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 36..70
score: 7.837
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 144..178
score: 12.025
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 264..386
e-value: 6.1E-34
score: 119.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 402..509
e-value: 5.5E-35
score: 122.3
coord: 510..603
e-value: 2.4E-23
score: 84.4
coord: 17..158
e-value: 2.3E-25
score: 90.9
coord: 159..263
e-value: 3.3E-32
score: 113.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 604..679
e-value: 8.6E-6
score: 27.3
NoneNo IPR availablePANTHERPTHR44149FAMILY NOT NAMEDcoord: 182..385
coord: 141..316
NoneNo IPR availablePANTHERPTHR44149:SF3SUBFAMILY NOT NAMEDcoord: 182..385
coord: 141..316
NoneNo IPR availablePANTHERPTHR44149:SF3SUBFAMILY NOT NAMEDcoord: 40..210
coord: 269..416
coord: 350..495
coord: 405..600
NoneNo IPR availablePANTHERPTHR44149FAMILY NOT NAMEDcoord: 350..495
coord: 269..416
coord: 405..600
NoneNo IPR availablePANTHERPTHR44149FAMILY NOT NAMEDcoord: 40..210
NoneNo IPR availableSUPERFAMILYSSF81901HCP-likecoord: 437..594

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G006270CSPI05G08820Wild cucumber (PI 183967)cpicucB285
CsaV3_5G006270Cucsa.166010Cucumber (Gy14) v1cgycucB264
CsaV3_5G006270CmaCh04G002690Cucurbita maxima (Rimu)cmacucB0883
CsaV3_5G006270CmoCh04G002750Cucurbita moschata (Rifu)cmocucB0873
CsaV3_5G006270Cp4.1LG01g04310Cucurbita pepo (Zucchini)cpecucB0542
CsaV3_5G006270CsGy5G006210Cucumber (Gy14) v2cgybcucB232
CsaV3_5G006270Carg25669Silver-seed gourdcarcucB0892
CsaV3_5G006270Cla020075Watermelon (97103) v1cucwmB454
CsaV3_5G006270MELO3C011729Melon (DHL92) v3.5.1cucmeB370
CsaV3_5G006270ClCG02G013900Watermelon (Charleston Gray)cucwcgB402
CsaV3_5G006270Lsi04G008130Bottle gourd (USVL1VR-Ls)cuclsiB387
CsaV3_5G006270MELO3C011729.2Melon (DHL92) v3.6.1cucmedB362
CsaV3_5G006270Cla97C02G039540Watermelon (97103) v2cucwmbB383
CsaV3_5G006270Bhi07G000879Wax gourdcucwgoB525
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G006270Cucumber (Chinese Long) v3cuccucB127
CsaV3_5G006270Cucumber (Chinese Long) v3cuccucB196
CsaV3_5G006270Cucumber (Chinese Long) v3cuccucB202
CsaV3_5G006270Silver-seed gourdcarcucB0185
CsaV3_5G006270Silver-seed gourdcarcucB0882
CsaV3_5G006270Cucumber (Gy14) v1cgycucB474
CsaV3_5G006270Cucurbita maxima (Rimu)cmacucB0360
CsaV3_5G006270Cucurbita maxima (Rimu)cmacucB0884
CsaV3_5G006270Cucurbita maxima (Rimu)cmacucB0993
CsaV3_5G006270Cucurbita moschata (Rifu)cmocucB0357
CsaV3_5G006270Cucurbita moschata (Rifu)cmocucB0872
CsaV3_5G006270Cucurbita moschata (Rifu)cmocucB0978
CsaV3_5G006270Cucurbita pepo (Zucchini)cpecucB0223
CsaV3_5G006270Cucurbita pepo (Zucchini)cpecucB0541
CsaV3_5G006270Cucurbita pepo (Zucchini)cpecucB1069
CsaV3_5G006270Wild cucumber (PI 183967)cpicucB293
CsaV3_5G006270Bottle gourd (USVL1VR-Ls)cuclsiB374
CsaV3_5G006270Melon (DHL92) v3.5.1cucmeB365
CsaV3_5G006270Melon (DHL92) v3.6.1cucmedB359
CsaV3_5G006270Watermelon (97103) v1cucwmB391