CsGy5G006210 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G006210
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Pentatricopeptide repeat-containing protein At2g16880
Location	Chr5 : 4155959 .. 4158310 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACTCCTTCAACTTCACACCAGGGACCAATCCAGGAAGAGAATCTAGAACAGCAACTGATTCAAACCATAACAACGATCCTCAATGCCACCAAACCATCTCTCAGTGCACTTGCCCCATATGCCGCACATCTTTCTCCTTCCTTGATATCCTCCATTTTCGCCTCCAAAGCTCTAAGTTCTCATCCCTCCGTTCTTTTAAATGTCTTCAAATGGGCTCAGAAACATGTCCCCTCTTTCTCTTCCCCACCCAATAATTCTCTCTCTTCTCTTCTTACCCTCTTACCTTCTCTGTTTCGCCATTACATGTTCTCCGATGCCAAATCCCTCCTTATTTCCTTCATTTCTTCCGATCGCCAACACGAACTCCATAAATTGATTCTCCATCCCACTCGTGATCTTCCCGAGCCGTCCAAAGAGCTACTGGATACCTCCATTGGCGCCTACGTGCAAATGGACCAGCCCCATCTTGCTACTCAGATCTTCAACAAGATGAAGCGGCTTAACTACCGGCCGAATTTGCTTACCTGCAACACATTGATGAATTCCTTGGTAAGATACCCGTCTTCGAGTTCTATTCTATTGGCTAGACAAGTATTAAAGGATTCGATTAAACTCGGCGTGGTACCGAATACTAATAGCTTCAATATTTTGATATATGGGTATTGCTTAGAGAGTAAAGTTAAGGATGCACTGGATTGGGTGAATAAAATGAGTGAGTTTGGTTGTGTACCGGATACTGTGAGTTATAATACGATATTGGATGCATTGTTAAAGAGGAGACTGTTACAAGAGGCCCGGGACTTGCTGTTGGACATGAAAAGTAAAGGGCTGTCGCCAAATAAGCATACGTATAATATGTTGGTTTGTGGATATTGCAGACTGGGGTTACTGAAGGAGGCTACCAAGGTGATCGAAATAATGACGCGTAATAATTTGTTGCCTACTGTTTGGACTTATAATATGTTGGTTAATGGGTTTTGTAATGATGGTAAGATTGATGAGGCTTTTAGGATAAGAGATGAGATGGAGAAAATGAATGTCTTGCCTGACGTGGTTACCTATAACACATTGATTGATGGGTGTTCCCAGTGGCGGGATAGTTCTGAGGTATATAGTTTGATTGAAGAAATGGATAAGAAAGGAGTGAAGTGTAATGCAGTTACTTACAATATAATACTGAAATGGATGTGTAAGAAAGGGAATATGACTGAAGCAACCACTACTCTTGATAAGATGGAAGAAAATGGACTCTCCCCTGATTGTGTGACGTACAATACTCTAATAGGTGCTTATTGTAAGGCTGGAAAAATGGGAAAAGCGTTTAGAATGATGGATGAAATGACTAGTAAAGGTTTGAAAATTGATACTTGGACCTTGAATACGATTCTCCATTGTCTCTGTGTGGAGAAAAAACTTGATGAGGCATACAACTTATTATGCAGTGCTAGTAAGCGGGGCTATATTCTTGATGAGGTTAGCTATGGTATTCTGATTTTGGGTTACTTCAAAGATGAAAAGGGAGACAGAGCCTTGAATCTTTGGGATGAAATGAAGGAAAGACAGATTATGCCAAGCACCATCACCTATAATTCTGTGATTGGAGGACTATGTCAGTCTAGGAAAGTTGATCAAGCTATAGATAAGCTGAATGAGATGCTTGAGAATGGATTAGTTCCTGATGAAACTACTTACAACATAATTATCCATGGCTTTTGTTTGGAAGGGAATGTGGAAAAAGCATTCCAATTCCACAACGAAATGATTGAGAATTTATTCAAGCCAGATGTCTATACTTGTAATATTCTTCTTCGTGGGTTATGCAGAGAGGGTATGCTAGAGAAGGCTCTTAAGCTGTTCAATACTTTGGTTTCTAAAGGCAAAGACATTGATGTAGTTACGTATAATACCATAATATCTAGTCTGTGCAAAGAAGGGAAATTCGAGAATGCTTATGATCTTCTTACTGAAATGGAAGCGAAAAAGTTAGGTCCTGATCAATATACTTACAAAGTGATTATTGCTGCTCTAACAGATGCGGGAAGGATTAAGGAGGCGGAGGAATTTACATTGAAAATGGTTGAATCGGGAATAGTGCATGATCAGAATTTGAAATTGGGCAAAGGGCAGAATGTGCTAACCTCTGAAGTTTCGGAACATTTTGATTTCAAGTCTATAGCTTACTCGGATCAGATCAATGAACTATGTAATCAACATAAGTATAAGGATGCAATGCACCTATTTGTCGAAGTTACAAAGGAAGGTGTTGCTTTAAACAAATACACTTATCTAAATTTGATGGAGGGGCTGATTAAGAGGCGTAAAAGCACATCAAAGGCCAGCCGGTGA

mRNA sequence

ATGGAAACTCCTTCAACTTCACACCAGGGACCAATCCAGGAAGAGAATCTAGAACAGCAACTGATTCAAACCATAACAACGATCCTCAATGCCACCAAACCATCTCTCAGTGCACTTGCCCCATATGCCGCACATCTTTCTCCTTCCTTGATATCCTCCATTTTCGCCTCCAAAGCTCTAAGTTCTCATCCCTCCGTTCTTTTAAATGTCTTCAAATGGGCTCAGAAACATGTCCCCTCTTTCTCTTCCCCACCCAATAATTCTCTCTCTTCTCTTCTTACCCTCTTACCTTCTCTGTTTCGCCATTACATGTTCTCCGATGCCAAATCCCTCCTTATTTCCTTCATTTCTTCCGATCGCCAACACGAACTCCATAAATTGATTCTCCATCCCACTCGTGATCTTCCCGAGCCGTCCAAAGAGCTACTGGATACCTCCATTGGCGCCTACGTGCAAATGGACCAGCCCCATCTTGCTACTCAGATCTTCAACAAGATGAAGCGGCTTAACTACCGGCCGAATTTGCTTACCTGCAACACATTGATGAATTCCTTGGTAAGATACCCGTCTTCGAGTTCTATTCTATTGGCTAGACAAGTATTAAAGGATTCGATTAAACTCGGCGTGGTACCGAATACTAATAGCTTCAATATTTTGATATATGGGTATTGCTTAGAGAGTAAAGTTAAGGATGCACTGGATTGGGTGAATAAAATGAGTGAGTTTGGTTGTGTACCGGATACTGTGAGTTATAATACGATATTGGATGCATTGTTAAAGAGGAGACTGTTACAAGAGGCCCGGGACTTGCTGTTGGACATGAAAAGTAAAGGGCTGTCGCCAAATAAGCATACGTATAATATGTTGGTTTGTGGATATTGCAGACTGGGGTTACTGAAGGAGGCTACCAAGGTGATCGAAATAATGACGCGTAATAATTTGTTGCCTACTGTTTGGACTTATAATATGTTGGTTAATGGGTTTTGTAATGATGGTAAGATTGATGAGGCTTTTAGGATAAGAGATGAGATGGAGAAAATGAATGTCTTGCCTGACGTGGTTACCTATAACACATTGATTGATGGGTGTTCCCAGTGGCGGGATAGTTCTGAGGTATATAGTTTGATTGAAGAAATGGATAAGAAAGGAGTGAAGTGTAATGCAGTTACTTACAATATAATACTGAAATGGATGTGTAAGAAAGGGAATATGACTGAAGCAACCACTACTCTTGATAAGATGGAAGAAAATGGACTCTCCCCTGATTGTGTGACGTACAATACTCTAATAGGTGCTTATTGTAAGGCTGGAAAAATGGGAAAAGCGTTTAGAATGATGGATGAAATGACTAGTAAAGGTTTGAAAATTGATACTTGGACCTTGAATACGATTCTCCATTGTCTCTGTGTGGAGAAAAAACTTGATGAGGCATACAACTTATTATGCAGTGCTAGTAAGCGGGGCTATATTCTTGATGAGGTTAGCTATGGTATTCTGATTTTGGGTTACTTCAAAGATGAAAAGGGAGACAGAGCCTTGAATCTTTGGGATGAAATGAAGGAAAGACAGATTATGCCAAGCACCATCACCTATAATTCTGTGATTGGAGGACTATGTCAGTCTAGGAAAGTTGATCAAGCTATAGATAAGCTGAATGAGATGCTTGAGAATGGATTAGTTCCTGATGAAACTACTTACAACATAATTATCCATGGCTTTTGTTTGGAAGGGAATGTGGAAAAAGCATTCCAATTCCACAACGAAATGATTGAGAATTTATTCAAGCCAGATGTCTATACTTGTAATATTCTTCTTCGTGGGTTATGCAGAGAGGGTATGCTAGAGAAGGCTCTTAAGCTGTTCAATACTTTGGTTTCTAAAGGCAAAGACATTGATGTAGTTACGTATAATACCATAATATCTAGTCTGTGCAAAGAAGGGAAATTCGAGAATGCTTATGATCTTCTTACTGAAATGGAAGCGAAAAAGTTAGGTCCTGATCAATATACTTACAAAGTGATTATTGCTGCTCTAACAGATGCGGGAAGGATTAAGGAGGCGGAGGAATTTACATTGAAAATGGTTGAATCGGGAATAGTGCATGATCAGAATTTGAAATTGGGCAAAGGGCAGAATGTGCTAACCTCTGAAGTTTCGGAACATTTTGATTTCAAGTCTATAGCTTACTCGGATCAGATCAATGAACTATGTAATCAACATAAGTATAAGGATGCAATGCACCTATTTGTCGAAGTTACAAAGGAAGGTGTTGCTTTAAACAAATACACTTATCTAAATTTGATGGAGGGGCTGATTAAGAGGCGTAAAAGCACATCAAAGGCCAGCCGGTGA

Coding sequence (CDS)

ATGGAAACTCCTTCAACTTCACACCAGGGACCAATCCAGGAAGAGAATCTAGAACAGCAACTGATTCAAACCATAACAACGATCCTCAATGCCACCAAACCATCTCTCAGTGCACTTGCCCCATATGCCGCACATCTTTCTCCTTCCTTGATATCCTCCATTTTCGCCTCCAAAGCTCTAAGTTCTCATCCCTCCGTTCTTTTAAATGTCTTCAAATGGGCTCAGAAACATGTCCCCTCTTTCTCTTCCCCACCCAATAATTCTCTCTCTTCTCTTCTTACCCTCTTACCTTCTCTGTTTCGCCATTACATGTTCTCCGATGCCAAATCCCTCCTTATTTCCTTCATTTCTTCCGATCGCCAACACGAACTCCATAAATTGATTCTCCATCCCACTCGTGATCTTCCCGAGCCGTCCAAAGAGCTACTGGATACCTCCATTGGCGCCTACGTGCAAATGGACCAGCCCCATCTTGCTACTCAGATCTTCAACAAGATGAAGCGGCTTAACTACCGGCCGAATTTGCTTACCTGCAACACATTGATGAATTCCTTGGTAAGATACCCGTCTTCGAGTTCTATTCTATTGGCTAGACAAGTATTAAAGGATTCGATTAAACTCGGCGTGGTACCGAATACTAATAGCTTCAATATTTTGATATATGGGTATTGCTTAGAGAGTAAAGTTAAGGATGCACTGGATTGGGTGAATAAAATGAGTGAGTTTGGTTGTGTACCGGATACTGTGAGTTATAATACGATATTGGATGCATTGTTAAAGAGGAGACTGTTACAAGAGGCCCGGGACTTGCTGTTGGACATGAAAAGTAAAGGGCTGTCGCCAAATAAGCATACGTATAATATGTTGGTTTGTGGATATTGCAGACTGGGGTTACTGAAGGAGGCTACCAAGGTGATCGAAATAATGACGCGTAATAATTTGTTGCCTACTGTTTGGACTTATAATATGTTGGTTAATGGGTTTTGTAATGATGGTAAGATTGATGAGGCTTTTAGGATAAGAGATGAGATGGAGAAAATGAATGTCTTGCCTGACGTGGTTACCTATAACACATTGATTGATGGGTGTTCCCAGTGGCGGGATAGTTCTGAGGTATATAGTTTGATTGAAGAAATGGATAAGAAAGGAGTGAAGTGTAATGCAGTTACTTACAATATAATACTGAAATGGATGTGTAAGAAAGGGAATATGACTGAAGCAACCACTACTCTTGATAAGATGGAAGAAAATGGACTCTCCCCTGATTGTGTGACGTACAATACTCTAATAGGTGCTTATTGTAAGGCTGGAAAAATGGGAAAAGCGTTTAGAATGATGGATGAAATGACTAGTAAAGGTTTGAAAATTGATACTTGGACCTTGAATACGATTCTCCATTGTCTCTGTGTGGAGAAAAAACTTGATGAGGCATACAACTTATTATGCAGTGCTAGTAAGCGGGGCTATATTCTTGATGAGGTTAGCTATGGTATTCTGATTTTGGGTTACTTCAAAGATGAAAAGGGAGACAGAGCCTTGAATCTTTGGGATGAAATGAAGGAAAGACAGATTATGCCAAGCACCATCACCTATAATTCTGTGATTGGAGGACTATGTCAGTCTAGGAAAGTTGATCAAGCTATAGATAAGCTGAATGAGATGCTTGAGAATGGATTAGTTCCTGATGAAACTACTTACAACATAATTATCCATGGCTTTTGTTTGGAAGGGAATGTGGAAAAAGCATTCCAATTCCACAACGAAATGATTGAGAATTTATTCAAGCCAGATGTCTATACTTGTAATATTCTTCTTCGTGGGTTATGCAGAGAGGGTATGCTAGAGAAGGCTCTTAAGCTGTTCAATACTTTGGTTTCTAAAGGCAAAGACATTGATGTAGTTACGTATAATACCATAATATCTAGTCTGTGCAAAGAAGGGAAATTCGAGAATGCTTATGATCTTCTTACTGAAATGGAAGCGAAAAAGTTAGGTCCTGATCAATATACTTACAAAGTGATTATTGCTGCTCTAACAGATGCGGGAAGGATTAAGGAGGCGGAGGAATTTACATTGAAAATGGTTGAATCGGGAATAGTGCATGATCAGAATTTGAAATTGGGCAAAGGGCAGAATGTGCTAACCTCTGAAGTTTCGGAACATTTTGATTTCAAGTCTATAGCTTACTCGGATCAGATCAATGAACTATGTAATCAACATAAGTATAAGGATGCAATGCACCTATTTGTCGAAGTTACAAAGGAAGGTGTTGCTTTAAACAAATACACTTATCTAAATTTGATGGAGGGGCTGATTAAGAGGCGTAAAAGCACATCAAAGGCCAGCCGGTGA

Protein sequence

METPSTSHQGPIQEENLEQQLIQTITTILNATKPSLSALAPYAAHLSPSLISSIFASKALSSHPSVLLNVFKWAQKHVPSFSSPPNNSLSSLLTLLPSLFRHYMFSDAKSLLISFISSDRQHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGIVHDQNLKLGKGQNVLTSEVSEHFDFKSIAYSDQINELCNQHKYKDAMHLFVEVTKEGVALNKYTYLNLMEGLIKRRKSTSKASR

Homology

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BLAST of CsGy5G006210 vs. NCBI nr
Match: XP_004143692.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g16880 [Cucumis sativus])

HSP 1 Score: 461.5 bits (1186), Expect = 5.9e-126
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0


Query: 1   METPSTSHQGPIQEENLEQQLIQTITTILNATKPSLSALAPYAAHLSPSLISSIFASKAL 60
           METPSTSHQGPIQEENLEQQLIQTITTILNATKPSLSALAPYAAHLSPSLISSIFASKAL
Sbjct: 1   METPSTSHQGPIQEENLEQQLIQTITTILNATKPSLSALAPYAAHLSPSLISSIFASKAL 60

Query: 61  SSHPSVLLNVFKWAQKHVPSFSSPPNNSLSSLLTLLPSLFRHYMFSDAKSLLISFISSDR 120
           SSHPSVLLNVFKWAQKHVPSFSSPPNNSLSSLLTLLPSLFRHYMFSDAKSLLISFISSDR
Sbjct: 61  SSHPSVLLNVFKWAQKHVPSFSSPPNNSLSSLLTLLPSLFRHYMFSDAKSLLISFISSDR 120

Query: 121 QHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNT 180
           QHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNT
Sbjct: 121 QHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNT 180

Query: 181 LMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNK 239
           LMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNK
Sbjct: 181 LMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNK 238

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BLAST of CsGy5G006210 vs. NCBI nr
Match: XP_008445857.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g16880 [Cucumis melo] >XP_008445858.1 PREDICTED: pentatricopeptide repeat-containing protein At2g16880 [Cucumis melo])

HSP 1 Score: 408.3 bits (1048), Expect = 5.9e-110
Identity = 212/234 (90.60%), Postives = 223/234 (95.30%), Query Frame = 0


Query: 1   METPSTSHQGPIQEENLEQQLIQTITTILNATKPSLSALAPYAAHLSPSLISSIFASKAL 60
           M+TPSTS++GP Q+EN EQQLIQTITTIL++TKPS SALAPYAAHLSPSLISSIFAS+AL
Sbjct: 1   MKTPSTSYKGPTQQENQEQQLIQTITTILSSTKPSFSALAPYAAHLSPSLISSIFASEAL 60

Query: 61  SSHPSVLLNVFKWAQKHVPSFSSPPNNSLSSLLTLLPSLFRHYMFSDAKSLLISFISSDR 120
           SS PSVL++VFKWAQKHVPSFSSPP NSLSSLLTLLPSLFRHYMF DAKSLLISFISSDR
Sbjct: 61  SSRPSVLIHVFKWAQKHVPSFSSPPINSLSSLLTLLPSLFRHYMFYDAKSLLISFISSDR 120

Query: 121 QHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNT 180
           QHELHKLILHPTRDLPEPSK L+DTSIGAYVQM QPHLATQIFNKMKRLNYRPNLLTC T
Sbjct: 121 QHELHKLILHPTRDLPEPSKALMDTSIGAYVQMRQPHLATQIFNKMKRLNYRPNLLTCKT 180

Query: 181 LMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALD 235
           LMNSLVRYPSSSSILLARQV KDSIKLGVVP+TNS NILIYGYCLESKVKDALD
Sbjct: 181 LMNSLVRYPSSSSILLARQVFKDSIKLGVVPDTNSVNILIYGYCLESKVKDALD 234

[Close]

BLAST of CsGy5G006210 vs. NCBI nr
Match: XP_023525433.1 (pentatricopeptide repeat-containing protein At2g16880 [Cucurbita pepo subsp. pepo] >XP_023525440.1 pentatricopeptide repeat-containing protein At2g16880 [Cucurbita pepo subsp. pepo] >XP_023525450.1 pentatricopeptide repeat-containing protein At2g16880 [Cucurbita pepo subsp. pepo] >XP_023525458.1 pentatricopeptide repeat-containing protein At2g16880 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 367.5 bits (942), Expect = 1.2e-97
Identity = 189/238 (79.41%), Postives = 211/238 (88.66%), Query Frame = 0


Query: 1   METPSTSHQGPIQEENLEQQLIQTITTILNATKPSLSALAPYAAHLSPSLISSIFASKAL 60
           METPS ++Q P        +LIQTITTIL +TK  L+ALAPYAAHLSPSL+SSI +SKAL
Sbjct: 1   METPSITNQRP-------SELIQTITTILTSTKAPLTALAPYAAHLSPSLVSSILSSKAL 60

Query: 61  SSHPSVLLNVFKWAQKHVPSFSSPPNNSLSSLLTLLPSLFRHYMFSDAKSLLISFISSDR 120
           SSHP++LL++FKWAQKHVPSFSSPPNNSLSSL T+LPSLF H  FSDAKSLL+SFI++DR
Sbjct: 61  SSHPTILLSLFKWAQKHVPSFSSPPNNSLSSLFTILPSLFSHNKFSDAKSLLVSFIANDR 120

Query: 121 QHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNT 180
           QHELHKLILHPTRDLP PSK L+DTSIGAYVQM +PHLA QIF KMKRLNYRPNLLTCNT
Sbjct: 121 QHELHKLILHPTRDLPRPSKALMDTSIGAYVQMGKPHLAAQIFKKMKRLNYRPNLLTCNT 180

Query: 181 LMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNK 239
           L+NSLVRYPSS+SILL+R+V KDS+KLGVV NTNSFNILIYGYCLESK KDALD VNK
Sbjct: 181 LLNSLVRYPSSNSILLSREVFKDSVKLGVVLNTNSFNILIYGYCLESKFKDALDLVNK 231

[Close]

BLAST of CsGy5G006210 vs. NCBI nr
Match: XP_022942538.1 (pentatricopeptide repeat-containing protein At2g16880 [Cucurbita moschata] >XP_022942539.1 pentatricopeptide repeat-containing protein At2g16880 [Cucurbita moschata] >XP_022942540.1 pentatricopeptide repeat-containing protein At2g16880 [Cucurbita moschata] >XP_022942542.1 pentatricopeptide repeat-containing protein At2g16880 [Cucurbita moschata])

HSP 1 Score: 366.3 bits (939), Expect = 2.6e-97
Identity = 189/238 (79.41%), Postives = 210/238 (88.24%), Query Frame = 0


Query: 1   METPSTSHQGPIQEENLEQQLIQTITTILNATKPSLSALAPYAAHLSPSLISSIFASKAL 60
           METPS S+Q P        +LIQTITTIL +TK  L+ALAPYAAHLSPSL+SSI +SKAL
Sbjct: 1   METPSISNQRP-------SELIQTITTILTSTKAPLTALAPYAAHLSPSLVSSILSSKAL 60

Query: 61  SSHPSVLLNVFKWAQKHVPSFSSPPNNSLSSLLTLLPSLFRHYMFSDAKSLLISFISSDR 120
           SSHP++LL++FKWAQKHVPSFSSPPNNSLSSL T+LPSLF H  FSDAKSLL+SFI++DR
Sbjct: 61  SSHPTILLSLFKWAQKHVPSFSSPPNNSLSSLFTILPSLFSHNKFSDAKSLLVSFIANDR 120

Query: 121 QHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNT 180
           QHELHKLILHPTRDLP PSK L+DTSIGAYVQM +PHLA QIF KMKRLNYRPNLLTCNT
Sbjct: 121 QHELHKLILHPTRDLPRPSKALMDTSIGAYVQMGKPHLAAQIFKKMKRLNYRPNLLTCNT 180

Query: 181 LMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNK 239
           L+NSLVRYPS +SILL+R+V KDS+KLGVV NTNSFNILIYGYCLESK KDALD VNK
Sbjct: 181 LLNSLVRYPSLNSILLSREVFKDSVKLGVVLNTNSFNILIYGYCLESKFKDALDLVNK 231

[Close]

BLAST of CsGy5G006210 vs. NCBI nr
Match: XP_022983777.1 (pentatricopeptide repeat-containing protein At2g16880 [Cucurbita maxima] >XP_022983785.1 pentatricopeptide repeat-containing protein At2g16880 [Cucurbita maxima] >XP_022983794.1 pentatricopeptide repeat-containing protein At2g16880 [Cucurbita maxima] >XP_022983803.1 pentatricopeptide repeat-containing protein At2g16880 [Cucurbita maxima] >XP_022983811.1 pentatricopeptide repeat-containing protein At2g16880 [Cucurbita maxima])

HSP 1 Score: 365.5 bits (937), Expect = 4.4e-97
Identity = 189/238 (79.41%), Postives = 209/238 (87.82%), Query Frame = 0


Query: 1   METPSTSHQGPIQEENLEQQLIQTITTILNATKPSLSALAPYAAHLSPSLISSIFASKAL 60
           METPS S+Q P        +LIQTITTIL +TK  L+ALAPYAAHLSPSL+SSI +SKAL
Sbjct: 1   METPSISNQRP-------PELIQTITTILTSTKAPLTALAPYAAHLSPSLVSSILSSKAL 60

Query: 61  SSHPSVLLNVFKWAQKHVPSFSSPPNNSLSSLLTLLPSLFRHYMFSDAKSLLISFISSDR 120
           SSHP++LL++FKWAQKHVPSFSSPPNNSLSSL T+LPSLF H  FSDAKSLL+SFI+ DR
Sbjct: 61  SSHPTILLSLFKWAQKHVPSFSSPPNNSLSSLFTILPSLFSHNKFSDAKSLLVSFIADDR 120

Query: 121 QHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNT 180
           QHELHKLILHPTRDLP PSK L+DTSIGAYVQM +PHLA QIF KMKRLNYRPNLLTCNT
Sbjct: 121 QHELHKLILHPTRDLPRPSKALMDTSIGAYVQMGKPHLAAQIFKKMKRLNYRPNLLTCNT 180

Query: 181 LMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNK 239
           L+NSLVRYPS +SILL+R+V KDS+KLGVV NTNSFNILIYGYCLESK KDALD VNK
Sbjct: 181 LLNSLVRYPSLNSILLSREVFKDSVKLGVVLNTNSFNILIYGYCLESKFKDALDLVNK 231

[Close]

BLAST of CsGy5G006210 vs. TAIR10
Match: AT2G16880.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 180.3 bits (456), Expect = 4.7e-45
Identity = 101/224 (45.09%), Postives = 148/224 (66.07%), Query Frame = 0


Query: 18  EQQLIQTITTILNATKPS-LSALAPYAAHLSPSLISSIFASKALSSHPSVLLNVFKWAQK 77
           E QL++T+T+IL + K   L  L PY   ++  L++S+ +S +L+  P  L++ F+WAQ 
Sbjct: 8   ESQLLKTLTSILTSEKTHFLETLNPYIPQITQPLLTSLLSSPSLAKKPETLVSFFQWAQT 67

Query: 78  HVPSFSSPPNNSLSSLLTLLPSLFRHYMFSDAKSLLISFI-SSDRQHELHKLILHPTRDL 137
            +P   + P++S   L++++ SL  H+ F+DAKSLL+S+I +SD    L   +LHP   L
Sbjct: 68  SIP--EAFPSDSPLPLISVVRSLLSHHKFADAKSLLVSYIRTSDASLSLCNSLLHPNLHL 127

Query: 138 -PEPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSI 197
            P PSK L D ++ AY+   +PH+A QIF KM RL  +PNLLTCNTL+  LVRYPSS SI
Sbjct: 128 SPPPSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSI 187

Query: 198 LLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNK 239
             AR+V  D +K+GV  N  +FN+L+ GYCLE K++DAL  + +
Sbjct: 188 SSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLER 229

[Close]

BLAST of CsGy5G006210 vs. TAIR10
Match: AT5G25630.2 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 46.2 bits (108), Expect = 1.1e-04
Identity = 30/94 (31.91%), Postives = 47/94 (50.00%), Query Frame = 0


Query: 147 IGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMN--SLVRYPSSSSILLARQVLKDS 206
           I A+ +      A Q   KMK L   P   T NTL+    +   P  SS LL   + + +
Sbjct: 122 INAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGN 181

Query: 207 IKLGVVPNTNSFNILIYGYCLESKVKDALDWVNK 239
           + +G  PN  +FN+L+  +C + KV++A + V K
Sbjct: 182 VDVG--PNIRTFNVLVQAWCKKKKVEEAWEVVKK 213

[Close]

BLAST of CsGy5G006210 vs. Swiss-Prot
Match: sp|Q9ZVX5|PP156_ARATH (Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana OX=3702 GN=At2g16880 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 8.5e-44
Identity = 101/224 (45.09%), Postives = 148/224 (66.07%), Query Frame = 0


Query: 18  EQQLIQTITTILNATKPS-LSALAPYAAHLSPSLISSIFASKALSSHPSVLLNVFKWAQK 77
           E QL++T+T+IL + K   L  L PY   ++  L++S+ +S +L+  P  L++ F+WAQ 
Sbjct: 8   ESQLLKTLTSILTSEKTHFLETLNPYIPQITQPLLTSLLSSPSLAKKPETLVSFFQWAQT 67

Query: 78  HVPSFSSPPNNSLSSLLTLLPSLFRHYMFSDAKSLLISFI-SSDRQHELHKLILHPTRDL 137
            +P   + P++S   L++++ SL  H+ F+DAKSLL+S+I +SD    L   +LHP   L
Sbjct: 68  SIP--EAFPSDSPLPLISVVRSLLSHHKFADAKSLLVSYIRTSDASLSLCNSLLHPNLHL 127

Query: 138 -PEPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSI 197
            P PSK L D ++ AY+   +PH+A QIF KM RL  +PNLLTCNTL+  LVRYPSS SI
Sbjct: 128 SPPPSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSI 187

Query: 198 LLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNK 239
             AR+V  D +K+GV  N  +FN+L+ GYCLE K++DAL  + +
Sbjct: 188 SSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLER 229

[Close]

BLAST of CsGy5G006210 vs. TrEMBL
Match: tr|A0A1S3BD66|A0A1S3BD66_CUCME (pentatricopeptide repeat-containing protein At2g16880 OS=Cucumis melo OX=3656 GN=LOC103488749 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 3.9e-110
Identity = 212/234 (90.60%), Postives = 223/234 (95.30%), Query Frame = 0


Query: 1   METPSTSHQGPIQEENLEQQLIQTITTILNATKPSLSALAPYAAHLSPSLISSIFASKAL 60
           M+TPSTS++GP Q+EN EQQLIQTITTIL++TKPS SALAPYAAHLSPSLISSIFAS+AL
Sbjct: 1   MKTPSTSYKGPTQQENQEQQLIQTITTILSSTKPSFSALAPYAAHLSPSLISSIFASEAL 60

Query: 61  SSHPSVLLNVFKWAQKHVPSFSSPPNNSLSSLLTLLPSLFRHYMFSDAKSLLISFISSDR 120
           SS PSVL++VFKWAQKHVPSFSSPP NSLSSLLTLLPSLFRHYMF DAKSLLISFISSDR
Sbjct: 61  SSRPSVLIHVFKWAQKHVPSFSSPPINSLSSLLTLLPSLFRHYMFYDAKSLLISFISSDR 120

Query: 121 QHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNT 180
           QHELHKLILHPTRDLPEPSK L+DTSIGAYVQM QPHLATQIFNKMKRLNYRPNLLTC T
Sbjct: 121 QHELHKLILHPTRDLPEPSKALMDTSIGAYVQMRQPHLATQIFNKMKRLNYRPNLLTCKT 180

Query: 181 LMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALD 235
           LMNSLVRYPSSSSILLARQV KDSIKLGVVP+TNS NILIYGYCLESKVKDALD
Sbjct: 181 LMNSLVRYPSSSSILLARQVFKDSIKLGVVPDTNSVNILIYGYCLESKVKDALD 234

[Close]

BLAST of CsGy5G006210 vs. TrEMBL
Match: tr|A0A0A0KLC8|A0A0A0KLC8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175880 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 3.5e-95
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   METPSTSHQGPIQEENLEQQLIQTITTILNATKPSLSALAPYAAHLSPSLISSIFASKAL 60
           METPSTSHQGPIQEENLEQQLIQTITTILNATKPSLSALAPYAAHLSPSLISSIFASKAL
Sbjct: 1   METPSTSHQGPIQEENLEQQLIQTITTILNATKPSLSALAPYAAHLSPSLISSIFASKAL 60

Query: 61  SSHPSVLLNVFKWAQKHVPSFSSPPNNSLSSLLTLLPSLFRHYMFSDAKSLLISFISSDR 120
           SSHPSVLLNVFKWAQKHVPSFSSPPNNSLSSLLTLLPSLFRHYMFSDAKSLLISFISSDR
Sbjct: 61  SSHPSVLLNVFKWAQKHVPSFSSPPNNSLSSLLTLLPSLFRHYMFSDAKSLLISFISSDR 120

Query: 121 QHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNT 180
           QHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNT
Sbjct: 121 QHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNT 180

Query: 181 LMNSLV 187
           LMNSLV
Sbjct: 181 LMNSLV 186

[Close]

BLAST of CsGy5G006210 vs. TrEMBL
Match: tr|A0A2N9IKA1|A0A2N9IKA1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52345 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 3.8e-65
Identity = 132/219 (60.27%), Postives = 170/219 (77.63%), Query Frame = 0


Query: 20  QLIQTITTILNATKPSLSALAPYAAHLSPSLISSIFASKALSSHPSVLLNVFKWAQKHVP 79
           QL++TIT IL  +   L +L PY  HL+  ++ S+ +S+ L+S P  L++ FK+ Q H P
Sbjct: 17  QLLETITKILTTSNTQLESLIPYLPHLTQPILLSLLSSETLASRPYTLISFFKFLQSHSP 76

Query: 80  SFSSPPNNSLSSLLTLLPSLFRHYMFSDAKSLLISFISSDRQHELHKLILHPTRDLPEPS 139
           S +S P+    SLL+LLP LF H  FSDAKSLL+SFI+SDRQH+LH+LILHP R++P+PS
Sbjct: 77  SLTSSPH----SLLSLLPPLFAHCKFSDAKSLLVSFIASDRQHQLHRLILHPIRNIPKPS 136

Query: 140 KELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQ 199
           K LLDTSIGAYVQ ++PHLA QIF KMKRL   PNLLTCNTL+N+LVR+PSS SI L R+
Sbjct: 137 KTLLDTSIGAYVQSNKPHLAAQIFTKMKRLRLAPNLLTCNTLLNALVRHPSSYSISLCRK 196

Query: 200 VLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNK 239
           + KDS+KLGV  NTNS NI+IYGYCLE+K ++AL+ +NK
Sbjct: 197 IFKDSVKLGVNLNTNSLNIMIYGYCLENKFREALELLNK 231

[Close]

BLAST of CsGy5G006210 vs. TrEMBL
Match: tr|A0A2I4FAP2|A0A2I4FAP2_9ROSI (pentatricopeptide repeat-containing protein At2g16880 OS=Juglans regia OX=51240 GN=LOC108997070 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 7.2e-64
Identity = 130/226 (57.52%), Postives = 171/226 (75.66%), Query Frame = 0


Query: 11  PIQEENLEQQLIQTITTILNATKPSLSALAPYAAHLSPSLISSIFASKALSSHPSVLLNV 70
           P + + ++ QL+QTI  IL ++   L +L PY  HL+  ++ S+ +SK L+S P  LL+ 
Sbjct: 6   PPKPQLIQPQLLQTIAQILTSSNAPLHSLTPYLPHLTQPILLSLLSSKTLASRPYTLLSF 65

Query: 71  FKWAQKHVPSFSSPPNNSLSSLLTLLPSLFRHYMFSDAKSLLISFISSDRQHELHKLILH 130
           F++ Q H PS ++ PN     +L++LPSLF H  FSDAKSLL+SFI+SDRQH+LH+LILH
Sbjct: 66  FRFLQSHSPSLTASPN----CVLSILPSLFSHSKFSDAKSLLVSFITSDRQHQLHRLILH 125

Query: 131 PTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPS 190
           P+ ++P+P + LLDTSIGAYVQ+ QPHLA QIF KMKRL   P LLTCNTL+N+LVR+PS
Sbjct: 126 PSPEVPKPCRALLDTSIGAYVQLKQPHLAAQIFKKMKRLRLPPKLLTCNTLLNALVRHPS 185

Query: 191 SSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWV 237
           S SI L ++V  D++KLGV PNTNSFNILIYGYCLE+K  +ALD V
Sbjct: 186 SYSIALCKEVFNDAVKLGVKPNTNSFNILIYGYCLENKFGEALDLV 227

[Close]

BLAST of CsGy5G006210 vs. TrEMBL
Match: tr|A0A2P4K7P8|A0A2P4K7P8_QUESU (Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_60436 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.0e-62
Identity = 134/219 (61.19%), Postives = 162/219 (73.97%), Query Frame = 0


Query: 20  QLIQTITTILNATKPSLSALAPYAAHLSPSLISSIFASKALSSHPSVLLNVFKWAQKHVP 79
           Q+++TIT IL      L  L P+  +L+  L  S+ +SK LSS PS LL+ FK+ Q H P
Sbjct: 8   QVLETITKILTTPNTPLETLTPHLPNLTQPLFLSLLSSKTLSSRPSTLLSFFKFLQSHSP 67

Query: 80  SFSSPPNNSLSSLLTLLPSLFRHYMFSDAKSLLISFISSDRQHELHKLILHPTRDLPEPS 139
           S +S P+    SLL+LLPSLF H  FSDAKSLL+SFI+SDR HELH+ +LHP R  P+PS
Sbjct: 68  SLTSSPH----SLLSLLPSLFGHGKFSDAKSLLVSFIASDRHHELHRFLLHPPRLAPKPS 127

Query: 140 KELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQ 199
           K +LDTSIGAYVQ  QPHLA QIF+KMKRL   P LLTCNTL+N+LVR+PS+ SI L R 
Sbjct: 128 KAVLDTSIGAYVQSKQPHLAAQIFHKMKRLRLAPKLLTCNTLLNALVRHPSTYSISLCRA 187

Query: 200 VLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNK 239
           V KD++KLGV  NTNSFNI+IYGYCLE+K  DAL  VNK
Sbjct: 188 VFKDAVKLGVNLNTNSFNIMIYGYCLENKFSDALGLVNK 222

The following BLAST results are available for this feature:

BLAST of CsGy5G006210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143692.1	5.9e-126	100.00	PREDICTED: pentatricopeptide repeat-containing protein At2g16880 [Cucumis sativu...	[more]
XP_008445857.1	5.9e-110	90.60	PREDICTED: pentatricopeptide repeat-containing protein At2g16880 [Cucumis melo] ...	[more]
XP_023525433.1	1.2e-97	79.41	pentatricopeptide repeat-containing protein At2g16880 [Cucurbita pepo subsp. pep...	[more]
XP_022942538.1	2.6e-97	79.41	pentatricopeptide repeat-containing protein At2g16880 [Cucurbita moschata] >XP_0...	[more]
XP_022983777.1	4.4e-97	79.41	pentatricopeptide repeat-containing protein At2g16880 [Cucurbita maxima] >XP_022...	[more]

BLAST of CsGy5G006210 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G16880.1	4.7e-45	45.09	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G25630.2	1.1e-04	31.91	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CsGy5G006210 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZVX5\|PP156_ARATH	8.5e-44	45.09	Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana OX...	[more]

BLAST of CsGy5G006210 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BD66\|A0A1S3BD66_CUCME	3.9e-110	90.60	pentatricopeptide repeat-containing protein At2g16880 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0KLC8\|A0A0A0KLC8_CUCSA	3.5e-95	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175880 PE=4 SV=1	[more]
tr\|A0A2N9IKA1\|A0A2N9IKA1_FAGSY	3.8e-65	60.27	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52345 PE=4 SV=1	[more]
tr\|A0A2I4FAP2\|A0A2I4FAP2_9ROSI	7.2e-64	57.52	pentatricopeptide repeat-containing protein At2g16880 OS=Juglans regia OX=51240 ...	[more]
tr\|A0A2P4K7P8\|A0A2P4K7P8_QUESU	1.0e-62	61.19	Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_6...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G006210.1	CsGy5G006210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 594..622 e-value: 3.3E-10 score: 39.4 coord: 208..239 e-value: 2.4E-7 score: 30.3 coord: 382..415 e-value: 5.7E-8 score: 32.2
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 148..184 e-value: 0.0015 score: 18.4
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 494..527 e-value: 1.7E-4 score: 19.6 coord: 460..492 e-value: 0.0015 score: 16.5 coord: 634..667 e-value: 4.3E-9 score: 34.0 coord: 354..388 e-value: 6.5E-8 score: 30.3 coord: 669..702 e-value: 8.7E-4 score: 17.3 coord: 565..598 e-value: 1.2E-8 score: 32.5 coord: 320..353 e-value: 7.0E-9 score: 33.3 coord: 249..282 e-value: 1.9E-7 score: 28.8 coord: 424..458 e-value: 1.1E-10 score: 39.1 coord: 599..628 e-value: 6.5E-8 score: 30.3 coord: 215..248 e-value: 8.6E-9 score: 33.0 coord: 529..563 e-value: 3.7E-9 score: 34.2 coord: 389..423 e-value: 1.3E-8 score: 32.5 coord: 284..317 e-value: 3.8E-6 score: 24.7
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 494..523 e-value: 5.7E-5 score: 23.0
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 316..364 e-value: 5.8E-17 score: 61.5 coord: 632..678 e-value: 1.2E-15 score: 57.3 coord: 421..469 e-value: 9.5E-16 score: 57.6 coord: 526..574 e-value: 1.3E-16 score: 60.4 coord: 246..295 e-value: 1.5E-16 score: 60.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 667..701 score: 9.942
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 174..211 score: 6.851
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 632..666 score: 13.143
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 457..491 score: 9.043
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 352..386 score: 11.312
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 317..351 score: 12.726
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 492..526 score: 10.972
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 422..456 score: 13.263
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 212..246 score: 11.027
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 760..783 score: 5.294
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 527..561 score: 12.364
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 247..281 score: 12.025
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 562..596 score: 12.452
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 597..631 score: 11.685
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 725..759 score: 7.706
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 282..316 score: 11.904
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 139..173 score: 7.837
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 387..421 score: 12.057
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 613..707 e-value: 2.9E-23 score: 84.1 coord: 19..191 e-value: 1.3E-7 score: 33.1 coord: 505..612 e-value: 6.8E-35 score: 122.1
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 192..275 e-value: 4.9E-19 score: 70.5 coord: 346..414 e-value: 2.2E-20 score: 74.9 coord: 415..486 e-value: 7.2E-20 score: 73.2 coord: 276..345 e-value: 8.2E-21 score: 76.3 coord: 708..782 e-value: 1.0E-5 score: 27.1
None	No IPR available	PANTHER	PTHR44149	FAMILY NOT NAMED	coord: 372..521 coord: 245..422
None	No IPR available	PANTHER	PTHR44149	FAMILY NOT NAMED	coord: 285..488
None	No IPR available	PANTHER	PTHR44149	FAMILY NOT NAMED	coord: 445..597
None	No IPR available	PANTHER	PTHR44149	FAMILY NOT NAMED	coord: 135..309 coord: 512..703
None	No IPR available	PANTHER	PTHR44149:SF3	SUBFAMILY NOT NAMED	coord: 135..309
None	No IPR available	PANTHER	PTHR44149:SF3	SUBFAMILY NOT NAMED	coord: 445..597 coord: 285..488 coord: 512..703
None	No IPR available	PANTHER	PTHR44149:SF3	SUBFAMILY NOT NAMED	coord: 245..422
None	No IPR available	PANTHER	PTHR44149:SF3	SUBFAMILY NOT NAMED	coord: 372..521
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 540..697

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G006210	Cla020075	Watermelon (97103) v1	cgybwmB401
CsGy5G006210	Csa5G175880	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G006210	MELO3C011729	Melon (DHL92) v3.5.1	cgybmeB310
CsGy5G006210	ClCG02G013900	Watermelon (Charleston Gray)	cgybwcgB347
CsGy5G006210	CSPI05G08820	Wild cucumber (PI 183967)	cgybcpiB226
CsGy5G006210	CmaCh04G002690	Cucurbita maxima (Rimu)	cgybcmaB674
CsGy5G006210	CmoCh04G002750	Cucurbita moschata (Rifu)	cgybcmoB652
CsGy5G006210	Lsi04G008130	Bottle gourd (USVL1VR-Ls)	cgyblsiB331
CsGy5G006210	Cp4.1LG01g04310	Cucurbita pepo (Zucchini)	cgybcpeB647
CsGy5G006210	MELO3C011729.2	Melon (DHL92) v3.6.1	cgybmedB310
CsGy5G006210	CsaV3_5G006270	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G006210	Cla97C02G039540	Watermelon (97103) v2	cgybwmbB351
CsGy5G006210	Bhi07G000879	Wax gourd	cgybwgoB488
CsGy5G006210	Carg25669	Silver-seed gourd	carcgybB0841

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G006210	Cucumber (Gy14) v2	cgybcgybB095
CsGy5G006210	Cucumber (Gy14) v2	cgybcgybB144
CsGy5G006210	Cucurbita maxima (Rimu)	cgybcmaB673
CsGy5G006210	Cucurbita moschata (Rifu)	cgybcmoB651
CsGy5G006210	Cucurbita pepo (Zucchini)	cgybcpeB646
CsGy5G006210	Cucumber (Chinese Long) v2	cgybcuB218
CsGy5G006210	Silver-seed gourd	carcgybB0832
CsGy5G006210	Cucumber (Chinese Long) v3	cgybcucB234