CsaV3_4G023230 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G023230
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Description50S ribosomal protein L11
Locationchr4 : 13509068 .. 13509535 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCTTGAAAGAGATTCTGACCAGACGACCCGTCGCTGCCACCATCAGGCTCACCGTCCCTGCTGGTGGAGCTCGCCCTGCGCCACCGGTGGGTCCAGCGCTTGGTCAATACCGGCTGAATCTGATGGCTTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAACCCGAGACACCCATGGCCGTAACCATTACAGCTTTCAAGGACAACACCTTCGAGTTCACCGTCAAATCACCGTCAGTTACTTGGTACTTGAAGAAAGCTGCTGGGATCGAATCTGGGAGCAGCCGCCCAGGCCACGTAGTCGCCTCCACGCTCTCAGTCAAGCACATTTATGAGATCGCTAAAGTCAAGCAGTCTGATCCTTATTGCCAGTACATGCCACTAGAATCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAAGTCCTTAACGAATTGGAGTAA

mRNA sequence

ATGGCCACCTTGAAAGAGATTCTGACCAGACGACCCGTCGCTGCCACCATCAGGCTCACCGTCCCTGCTGGTGGAGCTCGCCCTGCGCCACCGGTGGGTCCAGCGCTTGGTCAATACCGGCTGAATCTGATGGCTTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAACCCGAGACACCCATGGCCGTAACCATTACAGCTTTCAAGGACAACACCTTCGAGTTCACCGTCAAATCACCGTCAGTTACTTGGTACTTGAAGAAAGCTGCTGGGATCGAATCTGGGAGCAGCCGCCCAGGCCACGTAGTCGCCTCCACGCTCTCAGTCAAGCACATTTATGAGATCGCTAAAGTCAAGCAGTCTGATCCTTATTGCCAGTACATGCCACTAGAATCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAAGTCCTTAACGAATTGGAGTAA

Coding sequence (CDS)

ATGGCCACCTTGAAAGAGATTCTGACCAGACGACCCGTCGCTGCCACCATCAGGCTCACCGTCCCTGCTGGTGGAGCTCGCCCTGCGCCACCGGTGGGTCCAGCGCTTGGTCAATACCGGCTGAATCTGATGGCTTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAACCCGAGACACCCATGGCCGTAACCATTACAGCTTTCAAGGACAACACCTTCGAGTTCACCGTCAAATCACCGTCAGTTACTTGGTACTTGAAGAAAGCTGCTGGGATCGAATCTGGGAGCAGCCGCCCAGGCCACGTAGTCGCCTCCACGCTCTCAGTCAAGCACATTTATGAGATCGCTAAAGTCAAGCAGTCTGATCCTTATTGCCAGTACATGCCACTAGAATCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAAGTCCTTAACGAATTGGAGTAA

Protein sequence

MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE
Homology
[Close]
BLAST of CsaV3_4G023230 vs. NCBI nr
Match: XP_004142176.1 (PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis sativus] >KGN54055.1 hypothetical protein Csa_4G279840 [Cucumis sativus])

HSP 1 Score: 311.2 bits (796), Expect = 2.0e-81
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of CsaV3_4G023230 vs. NCBI nr
Match: XP_008449842.1 (PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis melo])

HSP 1 Score: 308.9 bits (790), Expect = 9.7e-81
Identity = 153/155 (98.71%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of CsaV3_4G023230 vs. NCBI nr
Match: XP_022132985.1 (54S ribosomal protein L19, mitochondrial [Momordica charantia])

HSP 1 Score: 302.0 bits (772), Expect = 1.2e-78
Identity = 148/155 (95.48%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGI+SGSSRPGHVVASTLS+KHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIDSGSSRPGHVVASTLSLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKV+ EL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]
BLAST of CsaV3_4G023230 vs. NCBI nr
Match: XP_022977323.1 (54S ribosomal protein L19, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 300.4 bits (768), Expect = 3.5e-78
Identity = 147/155 (94.84%), Postives = 153/155 (98.71%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVASTL++KHIY+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKV+ EL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]
BLAST of CsaV3_4G023230 vs. NCBI nr
Match: XP_022950615.1 (54S ribosomal protein L19, mitochondrial-like [Cucurbita moschata] >XP_023544347.1 54S ribosomal protein L19, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300.1 bits (767), Expect = 4.5e-78
Identity = 147/155 (94.84%), Postives = 153/155 (98.71%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVASTL+VKHIY+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDP+CQYMPLESICKSIIGTANSMGIKV+ EL+
Sbjct: 121 KQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]
BLAST of CsaV3_4G023230 vs. TAIR10
Match: AT4G35490.1 (mitochondrial ribosomal protein L11)

HSP 1 Score: 273.5 bits (698), Expect = 8.2e-74
Identity = 130/154 (84.42%), Postives = 147/154 (95.45%), Query Frame = 0 

Query: 2   ATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPET 61
           A  KEIL RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+T
Sbjct: 3   AAAKEIL-RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT 62

Query: 62  PMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVK 121
           PMAVTITAFKDN+FEFTVKSP+V+WY+KKAAG++ GS+RPGH+  +TLSV+H+YEIAKVK
Sbjct: 63  PMAVTITAFKDNSFEFTVKSPTVSWYIKKAAGVDKGSTRPGHLSVTTLSVRHVYEIAKVK 122

Query: 122 QSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           Q+DP+CQYMPLESICKSIIGTANSMGIK++ +LE
Sbjct: 123 QTDPFCQYMPLESICKSIIGTANSMGIKIVQDLE 155

[Close]
BLAST of CsaV3_4G023230 vs. TAIR10
Match: AT1G32990.1 (plastid ribosomal protein l11)

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-22
Identity = 60/140 (42.86%), Postives = 80/140 (57.14%), Query Frame = 0 

Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMAVTITAF 70
           + V   I+L + AG A PAPPVGPALG   +N+MAFCKD+NART   K    + V IT F
Sbjct: 72  KKVVGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTAD-KAGYIIPVEITVF 131

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYM 130
            D +F F +K+P  +  L KAAG+E GS  P       +++  +  IA  K  D  C   
Sbjct: 132 DDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNC--T 191

Query: 131 PLESICKSIIGTANSMGIKV 151
            +ES  + I GTA +MGI +
Sbjct: 192 TIESAMRIIAGTAANMGIDI 208

[Close]
BLAST of CsaV3_4G023230 vs. TAIR10
Match: AT5G51610.1 (Ribosomal protein L11 family protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.3e-07
Identity = 26/79 (32.91%), Postives = 46/79 (58.23%), Query Frame = 0 

Query: 72  DNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYMP 131
           D +F F +K+P  ++ L KAAG++ GS  P  +    +++  + +IA+VK  +  C    
Sbjct: 92  DQSFTFILKTPPTSFLLLKAAGVKKGSKDPKQIKVGMITIDQVRKIAEVKLPELNC--TT 151

Query: 132 LESICKSIIGTANSMGIKV 151
           + S  ++I GTA +MGI +
Sbjct: 152 IVSTMRTIAGTAGNMGIDI 168

[Close]
BLAST of CsaV3_4G023230 vs. Swiss-Prot
Match: sp|Q9UTK2|RM19_SCHPO (54S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl19 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.6e-34
Identity = 70/135 (51.85%), Postives = 90/135 (66.67%), Query Frame = 0 

Query: 17  IRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMAVTITAFKDNTFE 76
           I+L VPAG A P PP+GPALG   L  + FCK+FNART  + P TP+   IT     TF 
Sbjct: 9   IKLIVPAGKATPTPPIGPALGARGLKSIDFCKEFNARTAGWMPNTPVPCKITVTPQRTFT 68

Query: 77  FTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYMPLESIC 136
           FT+ +P  +W + K   +E GSS P H +   LS+KHIYEIAK+K +DP  Q + L S+C
Sbjct: 69  FTIHTPPTSWLISKTLDLEKGSSSPLHDIKGQLSLKHIYEIAKLKSTDPSLQGIELLSLC 128

Query: 137 KSIIGTANSMGIKVL 152
           KS+IGTA SMG+KV+
Sbjct: 129 KSVIGTAKSMGVKVV 143

[Close]
BLAST of CsaV3_4G023230 vs. Swiss-Prot
Match: sp|O67758|RL11_AQUAE (50S ribosomal protein L11 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rplK PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.6e-29
Identity = 66/140 (47.14%), Postives = 94/140 (67.14%), Query Frame = 0 

Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMAVTITAF 70
           + V ATI L +PA  A PAPPVGPALGQ+ +N+M F K FNA ++ Y+P T + V IT +
Sbjct: 3   KKVVATIELMLPAQQASPAPPVGPALGQHGVNIMEFVKQFNAASRDYEPGTILPVVITVY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYM 130
           +D +F F +K+P V++ LKKAAG+E GSS P  V    ++VK + EIAK+K  D      
Sbjct: 63  QDRSFTFIMKTPPVSYLLKKAAGVEKGSSDPKRVKVGKITVKQLEEIAKMKMKD--MNTR 122

Query: 131 PLESICKSIIGTANSMGIKV 151
            L++  +++ GTA SMGI++
Sbjct: 123 DLKAAMRTVAGTAKSMGIEI 140

[Close]
BLAST of CsaV3_4G023230 vs. Swiss-Prot
Match: sp|Q07KJ7|RL11_RHOP5 (50S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain BisA53) OX=316055 GN=rplK PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.6e-29
Identity = 65/140 (46.43%), Postives = 94/140 (67.14%), Query Frame = 0 

Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMAVTITAF 70
           + V   ++L VPAG A P+PP+GPALGQ  LN+M FCK+FNA+TQK +  TP+ V IT +
Sbjct: 3   KKVTGYLKLQVPAGAANPSPPIGPALGQRGLNIMEFCKNFNAQTQKEEKNTPIPVVITIY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYM 130
            D +F F +K+P ++++LK+AA I+SGS  PG  VA  +S   + EIA+ K  D  C   
Sbjct: 63  ADRSFTFEMKTPPMSFFLKQAAKIQSGSKLPGRDVAGKVSSAQVREIAERKMKDLNCD-- 122

Query: 131 PLESICKSIIGTANSMGIKV 151
            +ES  + + G+A SMG++V
Sbjct: 123 SIESAMRMVEGSARSMGLQV 140

[Close]
BLAST of CsaV3_4G023230 vs. Swiss-Prot
Match: sp|A7HWQ0|RL11_PARL1 (50S ribosomal protein L11 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) OX=402881 GN=rplK PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.7e-29
Identity = 66/141 (46.81%), Postives = 90/141 (63.83%), Query Frame = 0 

Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMAVTITAF 70
           + +   I+L VPAG A P+PP+GPALGQ  LN+M FCK FNA TQK +   P+ V ITAF
Sbjct: 3   KKIEGYIKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAATQKMEQGMPIPVVITAF 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYM 130
            D +F F +K+P  +++LKKAA + SGS  PG   A T++V    EIA+ K +D      
Sbjct: 63  SDRSFTFAMKTPPASYFLKKAAKVTSGSKTPGRASAGTVTVAQCREIAEAKMAD--LNAN 122

Query: 131 PLESICKSIIGTANSMGIKVL 152
            L+   K I G+A SMG++V+
Sbjct: 123 DLDQATKIIAGSARSMGLQVV 141

[Close]
BLAST of CsaV3_4G023230 vs. Swiss-Prot
Match: sp|Q7VRP3|RL11_BLOFL (50S ribosomal protein L11 OS=Blochmannia floridanus OX=203907 GN=rplK PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-28
Identity = 65/148 (43.92%), Postives = 96/148 (64.86%), Query Frame = 0 

Query: 7   ILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMAVT 66
           ++ ++ V + I+L + A  A P+PP+GPALGQ  +N+M FCKDFN RT  ++    + V 
Sbjct: 1   MIVKKKVQSCIKLQIEARSATPSPPIGPALGQQGINIMKFCKDFNTRTADFEMGLILPVV 60

Query: 67  ITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPY 126
           IT + D +F F +K+P+  + LKKAAGI+SGS +P  V    + +  IYEIAK+K  D  
Sbjct: 61  ITVYVDRSFSFVIKTPTAVFLLKKAAGIKSGSEKPKCVSVGKVLISQIYEIAKIKLID-- 120

Query: 127 CQYMPLESICKSIIGTANSMGIKVLNEL 155
              + LES  KSI+GTA S+G++V + L
Sbjct: 121 MTSLNLESASKSIMGTARSIGLEVEDNL 146

[Close]
BLAST of CsaV3_4G023230 vs. TrEMBL
Match: tr|A0A0A0KWT6|A0A0A0KWT6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G279840 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.3e-81
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of CsaV3_4G023230 vs. TrEMBL
Match: tr|A0A1S3BMZ5|A0A1S3BMZ5_CUCME (54S ribosomal protein L19, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491602 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 6.4e-81
Identity = 153/155 (98.71%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of CsaV3_4G023230 vs. TrEMBL
Match: tr|A0A067G7I7|A0A067G7I7_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g031693mg PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.9e-77
Identity = 146/155 (94.19%), Postives = 152/155 (98.06%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPM+VTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHV AST+++KHIYEIAKV
Sbjct: 61  TPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYMPLESICKSIIGTA +MGIKV+ ELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTAATMGIKVVKELE 155

[Close]
BLAST of CsaV3_4G023230 vs. TrEMBL
Match: tr|A0A061DFE6|A0A061DFE6_THECC (Mitochondrial ribosomal protein L11 OS=Theobroma cacao OX=3641 GN=TCM_000052 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 2.5e-77
Identity = 144/155 (92.90%), Postives = 153/155 (98.71%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60
           M+TLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+
Sbjct: 1   MSTLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEF VKSPSVTWYLKKAAGIESGSSRPGHV+A+TLSV+HIYEIAK+
Sbjct: 61  TPMAVTITAFKDNTFEFIVKSPSVTWYLKKAAGIESGSSRPGHVIATTLSVRHIYEIAKI 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYM LESICKSIIGTAN+MGIKV+NEL+
Sbjct: 121 KQSDPYCQYMSLESICKSIIGTANTMGIKVVNELD 155

[Close]
BLAST of CsaV3_4G023230 vs. TrEMBL
Match: tr|A0A2P6RLB1|A0A2P6RLB1_ROSCH (Putative ribosomal protein L11/L12 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0097051 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 2.5e-77
Identity = 144/155 (92.90%), Postives = 152/155 (98.06%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGH VASTLSV+H+YEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHAVASTLSVRHVYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYMPLESICKSIIGTAN+MGI+V+ +L+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANTMGIQVVKDLQ 155

The following BLAST results are available for this feature:
BLAST of CsaV3_4G023230 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004142176.12.0e-81100.00PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis sativus] >KGN54055.... [more]
XP_008449842.19.7e-8198.71PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis melo][more]
XP_022132985.11.2e-7895.4854S ribosomal protein L19, mitochondrial [Momordica charantia][more]
XP_022977323.13.5e-7894.8454S ribosomal protein L19, mitochondrial-like [Cucurbita maxima][more]
XP_022950615.14.5e-7894.8454S ribosomal protein L19, mitochondrial-like [Cucurbita moschata] >XP_023544347... [more]
BLAST of CsaV3_4G023230 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G35490.18.2e-7484.42mitochondrial ribosomal protein L11[more]
AT1G32990.11.1e-2242.86plastid ribosomal protein l11[more]
AT5G51610.12.3e-0732.91Ribosomal protein L11 family protein[more]
BLAST of CsaV3_4G023230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9UTK2|RM19_SCHPO3.6e-3451.8554S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 97... [more]
sp|O67758|RL11_AQUAE2.6e-2947.1450S ribosomal protein L11 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rplK PE=... [more]
sp|Q07KJ7|RL11_RHOP52.6e-2946.4350S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain BisA53) OX=31605... [more]
sp|A7HWQ0|RL11_PARL17.7e-2946.8150S ribosomal protein L11 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 130... [more]
sp|Q7VRP3|RL11_BLOFL1.0e-2843.9250S ribosomal protein L11 OS=Blochmannia floridanus OX=203907 GN=rplK PE=3 SV=1[more]
BLAST of CsaV3_4G023230 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KWT6|A0A0A0KWT6_CUCSA1.3e-81100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G279840 PE=3 SV=1[more]
tr|A0A1S3BMZ5|A0A1S3BMZ5_CUCME6.4e-8198.7154S ribosomal protein L19, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491602... [more]
tr|A0A067G7I7|A0A067G7I7_CITSI1.9e-7794.19Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g031693mg PE=3 SV=1[more]
tr|A0A061DFE6|A0A061DFE6_THECC2.5e-7792.90Mitochondrial ribosomal protein L11 OS=Theobroma cacao OX=3641 GN=TCM_000052 PE=... [more]
tr|A0A2P6RLB1|A0A2P6RLB1_ROSCH2.5e-7792.90Putative ribosomal protein L11/L12 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR020785Ribosomal_L11_CS
IPR006519Ribosomal_L11_bac-typ
IPR020783Ribosomal_L11_C
IPR036769Ribosomal_L11_C_sf
IPR036796Ribosomal_L11/L12_N_sf
IPR020784Ribosomal_L11_N
IPR000911Ribosomal_L11/L12
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0006626 protein targeting to mitochondrion
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G023230.1CsaV3_4G023230.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000911Ribosomal protein L11/L12SMARTSM00649rl11ccoord: 17..151
e-value: 3.1E-69
score: 246.0
IPR000911Ribosomal protein L11/L12PANTHERPTHR1166160S RIBOSOMAL PROTEIN L12coord: 11..154
IPR000911Ribosomal protein L11/L12HAMAPMF_00736Ribosomal_L11coord: 13..152
score: 25.745
IPR000911Ribosomal protein L11/L12CDDcd00349Ribosomal_L11coord: 17..150
e-value: 2.62396E-63
score: 191.895
IPR020784Ribosomal protein L11, N-terminalPFAMPF03946Ribosomal_L11_Ncoord: 17..75
e-value: 1.8E-22
score: 78.7
IPR036796Ribosomal protein L11/L12, N-terminal domain superfamilyGENE3DG3DSA:3.30.1550.10coord: 11..77
e-value: 2.3E-29
score: 102.9
IPR036796Ribosomal protein L11/L12, N-terminal domain superfamilySUPERFAMILYSSF54747Ribosomal L11/L12e N-terminal domaincoord: 13..80
IPR036769Ribosomal protein L11, C-terminal domain superfamilyGENE3DG3DSA:1.10.10.250coord: 78..151
e-value: 2.5E-31
score: 109.6
IPR036769Ribosomal protein L11, C-terminal domain superfamilySUPERFAMILYSSF46906Ribosomal protein L11, C-terminal domaincoord: 76..150
IPR020783Ribosomal protein L11, C-terminalPFAMPF00298Ribosomal_L11coord: 80..150
e-value: 5.7E-27
score: 93.9
IPR006519Ribosomal protein L11, bacterial-typeTIGRFAMTIGR01632TIGR01632coord: 13..150
e-value: 1.8E-55
score: 184.7
NoneNo IPR availablePANTHERPTHR11661:SF139S RIBOSOMAL PROTEIN L11, MITOCHONDRIALcoord: 11..154
NoneNo IPR availablePRODOMPD001367coord: 44..82
e-value: 6.0E-16
score: 202.0
IPR020785Ribosomal protein L11, conserved sitePROSITEPS00359RIBOSOMAL_L11coord: 137..152

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G023230CSPI04G12860Wild cucumber (PI 183967)cpicucB212
CsaV3_4G023230Cucsa.153060Cucumber (Gy14) v1cgycucB231
CsaV3_4G023230CsGy4G012430Cucumber (Gy14) v2cgybcucB171
CsaV3_4G023230Cla003155Watermelon (97103) v1cucwmB364
CsaV3_4G023230MELO3C014694Melon (DHL92) v3.5.1cucmeB294
CsaV3_4G023230ClCG02G024110Watermelon (Charleston Gray)cucwcgB305
CsaV3_4G023230Lsi10G009550Bottle gourd (USVL1VR-Ls)cuclsiB269
CsaV3_4G023230MELO3C014694.2Melon (DHL92) v3.6.1cucmedB286
CsaV3_4G023230Cla97C02G050330Watermelon (97103) v2cucwmbB293
CsaV3_4G023230Bhi10G000360Wax gourdcucwgoB396
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G023230Silver-seed gourdcarcucB0559
CsaV3_4G023230Silver-seed gourdcarcucB0960
CsaV3_4G023230Cucurbita maxima (Rimu)cmacucB0660
CsaV3_4G023230Cucurbita maxima (Rimu)cmacucB0726
CsaV3_4G023230Cucurbita moschata (Rifu)cmocucB0645
CsaV3_4G023230Cucurbita moschata (Rifu)cmocucB0713
CsaV3_4G023230Cucurbita pepo (Zucchini)cpecucB0346
CsaV3_4G023230Cucurbita pepo (Zucchini)cpecucB0908