ClCG02G024110 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G024110
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
Description50S ribosomal protein L11
LocationCG_Chr02 : 38435296 .. 38435763 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCTTGAAAGAGATTCTAACCAGACGACCCGTGGCTGCCACCATCAGGCTCACCGTCCCTGCCGGTGGAGCTCGCCCTGCGCCACCGGTGGGTCCGGCGCTGGGTCAATACCGGTTGAATCTGATGGCCTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAGGCCGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGACAACACCTTCGAGTTCACCGTCAAGTCACCGTCAGTCACTTGGTATCTGAAGAAAGCTGCCGGGATCGAATCTGGGAGCAGCCGCCCGGGCCATGTAGTCGCCACCACGCTCTCCGTCAAGCACATTTATGAGATCGCCAAAGTCAAGCAGTCCGATCCTTATTGCCAGTACATGCCACTCGAATCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAGGTTGTTAAGGAATTGGAGTAA

mRNA sequence

ATGGCCACCTTGAAAGAGATTCTAACCAGACGACCCGTGGCTGCCACCATCAGGCTCACCGTCCCTGCCGGTGGAGCTCGCCCTGCGCCACCGGTGGGTCCGGCGCTGGGTCAATACCGGTTGAATCTGATGGCCTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAGGCCGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGACAACACCTTCGAGTTCACCGTCAAGTCACCGTCAGTCACTTGGTATCTGAAGAAAGCTGCCGGGATCGAATCTGGGAGCAGCCGCCCGGGCCATGTAGTCGCCACCACGCTCTCCGTCAAGCACATTTATGAGATCGCCAAAGTCAAGCAGTCCGATCCTTATTGCCAGTACATGCCACTCGAATCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAGGTTGTTAAGGAATTGGAGTAA

Coding sequence (CDS)

ATGGCCACCTTGAAAGAGATTCTAACCAGACGACCCGTGGCTGCCACCATCAGGCTCACCGTCCCTGCCGGTGGAGCTCGCCCTGCGCCACCGGTGGGTCCGGCGCTGGGTCAATACCGGTTGAATCTGATGGCCTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAGGCCGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGACAACACCTTCGAGTTCACCGTCAAGTCACCGTCAGTCACTTGGTATCTGAAGAAAGCTGCCGGGATCGAATCTGGGAGCAGCCGCCCGGGCCATGTAGTCGCCACCACGCTCTCCGTCAAGCACATTTATGAGATCGCCAAAGTCAAGCAGTCCGATCCTTATTGCCAGTACATGCCACTCGAATCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAGGTTGTTAAGGAATTGGAGTAA

Protein sequence

MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE
Homology
[Close]
BLAST of ClCG02G024110 vs. Swiss-Prot
Match: RM19_SCHPO (54S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl19 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.7e-33
Identity = 70/135 (51.85%), Postives = 89/135 (65.93%), Query Frame = 1 

Query: 17  IRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKADTPMAVTITAFKDNTFE 76
           I+L VPAG A P PP+GPALG   L  + FCK+FNART  +  +TP+   IT     TF 
Sbjct: 9   IKLIVPAGKATPTPPIGPALGARGLKSIDFCKEFNARTAGWMPNTPVPCKITVTPQRTFT 68

Query: 77  FTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKVKQSDPYCQYMPLESIC 136
           FT+ +P  +W + K   +E GSS P H +   LS+KHIYEIAK+K +DP  Q + L S+C
Sbjct: 69  FTIHTPPTSWLISKTLDLEKGSSSPLHDIKGQLSLKHIYEIAKLKSTDPSLQGIELLSLC 128

Query: 137 KSIIGTANSMGIKVV 152
           KS+IGTA SMG+KVV
Sbjct: 129 KSVIGTAKSMGVKVV 143

[Close]
BLAST of ClCG02G024110 vs. Swiss-Prot
Match: RL11_PARL1 (50S ribosomal protein L11 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplK PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-29
Identity = 67/142 (47.18%), Postives = 89/142 (62.68%), Query Frame = 1 

Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKADTPMAVTITAF 70
           + +   I+L VPAG A P+PP+GPALGQ  LN+M FCK FNA TQK +   P+ V ITAF
Sbjct: 3   KKIEGYIKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAATQKMEQGMPIPVVITAF 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKVKQSDPYCQYM 130
            D +F F +K+P  +++LKKAA + SGS  PG   A T++V    EIA+ K +D      
Sbjct: 63  SDRSFTFAMKTPPASYFLKKAAKVTSGSKTPGRASAGTVTVAQCREIAEAKMAD--LNAN 122

Query: 131 PLESICKSIIGTANSMGIKVVK 153
            L+   K I G+A SMG++VV+
Sbjct: 123 DLDQATKIIAGSARSMGLQVVE 142

[Close]
BLAST of ClCG02G024110 vs. Swiss-Prot
Match: RL11_RHOP5 (50S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplK PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.6e-29
Identity = 65/140 (46.43%), Postives = 93/140 (66.43%), Query Frame = 1 

Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKADTPMAVTITAF 70
           + V   ++L VPAG A P+PP+GPALGQ  LN+M FCK+FNA+TQK + +TP+ V IT +
Sbjct: 3   KKVTGYLKLQVPAGAANPSPPIGPALGQRGLNIMEFCKNFNAQTQKEEKNTPIPVVITIY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKVKQSDPYCQYM 130
            D +F F +K+P ++++LK+AA I+SGS  PG  VA  +S   + EIA+ K  D  C   
Sbjct: 63  ADRSFTFEMKTPPMSFFLKQAAKIQSGSKLPGRDVAGKVSSAQVREIAERKMKDLNCD-- 122

Query: 131 PLESICKSIIGTANSMGIKV 151
            +ES  + + G+A SMG++V
Sbjct: 123 SIESAMRMVEGSARSMGLQV 140

[Close]
BLAST of ClCG02G024110 vs. Swiss-Prot
Match: RM11_HUMAN (39S ribosomal protein L11, mitochondrial OS=Homo sapiens GN=MRPL11 PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.6e-29
Identity = 68/148 (45.95%), Postives = 94/148 (63.51%), Query Frame = 1 

Query: 10  RRP-VAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKADTPMAVTIT 69
           R+P V   IR  V AG A P PP+GP LGQ  +++  FCK+FN RT+  K   P+   I 
Sbjct: 12  RKPEVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKIL 71

Query: 70  AFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKVKQSDP--Y 129
              D TFE  +  P+V+++LK AAGIE G+ + G  VA  +++KH+YEIA++K  D    
Sbjct: 72  VKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFA 131

Query: 130 CQYMPLESICKSIIGTANSMGIKVVKEL 155
            Q +PL S+ +SIIG+A S+GI+VVK+L
Sbjct: 132 LQDVPLSSVVRSIIGSARSLGIRVVKDL 159

[Close]
BLAST of ClCG02G024110 vs. Swiss-Prot
Match: RM11_DROME (39S ribosomal protein L11, mitochondrial OS=Drosophila melanogaster GN=mRpL11 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.4e-29
Identity = 59/155 (38.06%), Postives = 96/155 (61.94%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           + +LK+ + R    + ++  +PAG A   PP+GP LGQ  +N+ AFCKDFNA+T + K  
Sbjct: 8   LKSLKKTVERVTHTSKLKTNIPAGMAAAGPPLGPMLGQRAINIAAFCKDFNAKTAEMKEG 67

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKV 120
            P+   I+   D +++  +  P  T++LK+AAGI+ G+  PG  VA  +++KH+YEIA +
Sbjct: 68  VPLPCRISVNSDRSYDLAIHHPPATFFLKQAAGIQRGTMTPGKEVAGMITLKHLYEIAAI 127

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 156
           K  DP    + ++ +C+ +I  A + GIKVV+E++
Sbjct: 128 KIQDPPNVLLTMQQMCEMLISIARTCGIKVVREID 162

[Close]
BLAST of ClCG02G024110 vs. TrEMBL
Match: A0A0A0KWT6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G279840 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 1.9e-79
Identity = 150/155 (96.77%), Postives = 153/155 (98.71%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK +
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVA+TLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKV+ ELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of ClCG02G024110 vs. TrEMBL
Match: A0A0D2NBV6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G199600 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 3.6e-78
Identity = 146/155 (94.19%), Postives = 153/155 (98.71%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           M+TLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK D
Sbjct: 1   MSTLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKV 120
           TPM+VTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSV+HIYEIAK+
Sbjct: 61  TPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVRHIYEIAKI 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYM LESICKSIIGTAN+MGIKVVK+L+
Sbjct: 121 KQSDPYCQYMSLESICKSIIGTANTMGIKVVKDLD 155

[Close]
BLAST of ClCG02G024110 vs. TrEMBL
Match: A0A061DFE6_THECC (Mitochondrial ribosomal protein L11 OS=Theobroma cacao GN=TCM_000052 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 1.8e-77
Identity = 145/155 (93.55%), Postives = 151/155 (97.42%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           M+TLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK D
Sbjct: 1   MSTLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEF VKSPSVTWYLKKAAGIESGSSRPGHV+ATTLSV+HIYEIAK+
Sbjct: 61  TPMAVTITAFKDNTFEFIVKSPSVTWYLKKAAGIESGSSRPGHVIATTLSVRHIYEIAKI 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYM LESICKSIIGTAN+MGIKVV EL+
Sbjct: 121 KQSDPYCQYMSLESICKSIIGTANTMGIKVVNELD 155

[Close]
BLAST of ClCG02G024110 vs. TrEMBL
Match: A0A067G7I7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031693mg PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 3.0e-77
Identity = 145/155 (93.55%), Postives = 152/155 (98.06%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK +
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKV 120
           TPM+VTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHV A+T+++KHIYEIAKV
Sbjct: 61  TPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYMPLESICKSIIGTA +MGIKVVKELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTAATMGIKVVKELE 155

[Close]
BLAST of ClCG02G024110 vs. TrEMBL
Match: V4RUW5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026688mg PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 6.7e-77
Identity = 144/155 (92.90%), Postives = 152/155 (98.06%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK +
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKV 120
           TPM+VTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHV A+T+++KHIYEIAKV
Sbjct: 61  TPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYMPLESICKSIIGTA +MGIKVVKEL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTAATMGIKVVKELD 155

[Close]
BLAST of ClCG02G024110 vs. TAIR10
Match: AT4G35490.1 (AT4G35490.1 mitochondrial ribosomal protein L11)

HSP 1 Score: 275.4 bits (703), Expect = 2.1e-74
Identity = 132/154 (85.71%), Postives = 145/154 (94.16%), Query Frame = 1 

Query: 2   ATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKADT 61
           A  KEIL RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK DT
Sbjct: 3   AAAKEIL-RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT 62

Query: 62  PMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKVK 121
           PMAVTITAFKDN+FEFTVKSP+V+WY+KKAAG++ GS+RPGH+  TTLSV+H+YEIAKVK
Sbjct: 63  PMAVTITAFKDNSFEFTVKSPTVSWYIKKAAGVDKGSTRPGHLSVTTLSVRHVYEIAKVK 122

Query: 122 QSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 156
           Q+DP+CQYMPLESICKSIIGTANSMGIK+V++LE
Sbjct: 123 QTDPFCQYMPLESICKSIIGTANSMGIKIVQDLE 155

[Close]
BLAST of ClCG02G024110 vs. TAIR10
Match: AT1G32990.1 (AT1G32990.1 plastid ribosomal protein l11)

HSP 1 Score: 105.5 bits (262), Expect = 2.9e-23
Identity = 61/140 (43.57%), Postives = 79/140 (56.43%), Query Frame = 1 

Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKADTPMAVTITAF 70
           + V   I+L + AG A PAPPVGPALG   +N+MAFCKD+NART   KA   + V IT F
Sbjct: 72  KKVVGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTAD-KAGYIIPVEITVF 131

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKVKQSDPYCQYM 130
            D +F F +K+P  +  L KAAG+E GS  P       +++  +  IA  K  D  C   
Sbjct: 132 DDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNC--T 191

Query: 131 PLESICKSIIGTANSMGIKV 151
            +ES  + I GTA +MGI +
Sbjct: 192 TIESAMRIIAGTAANMGIDI 208

[Close]
BLAST of ClCG02G024110 vs. TAIR10
Match: AT5G51610.1 (AT5G51610.1 Ribosomal protein L11 family protein)

HSP 1 Score: 51.2 bits (121), Expect = 6.6e-07
Identity = 26/79 (32.91%), Postives = 44/79 (55.70%), Query Frame = 1 

Query: 72  DNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKVKQSDPYCQYMP 131
           D +F F +K+P  ++ L KAAG++ GS  P  +    +++  + +IA+VK  +  C    
Sbjct: 92  DQSFTFILKTPPTSFLLLKAAGVKKGSKDPKQIKVGMITIDQVRKIAEVKLPELNC--TT 151

Query: 132 LESICKSIIGTANSMGIKV 151
           + S  ++I GTA +MGI +
Sbjct: 152 IVSTMRTIAGTAGNMGIDI 168

[Close]
BLAST of ClCG02G024110 vs. NCBI nr
Match: gi|659097841|ref|XP_008449842.1| (PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis melo])

HSP 1 Score: 303.5 bits (776), Expect = 2.1e-79
Identity = 150/155 (96.77%), Postives = 153/155 (98.71%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK D
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVA+TLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKV+ ELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of ClCG02G024110 vs. NCBI nr
Match: gi|449448846|ref|XP_004142176.1| (PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis sativus])

HSP 1 Score: 303.1 bits (775), Expect = 2.7e-79
Identity = 150/155 (96.77%), Postives = 153/155 (98.71%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK +
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVA+TLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKV+ ELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of ClCG02G024110 vs. NCBI nr
Match: gi|823126060|ref|XP_012487400.1| (PREDICTED: 54S ribosomal protein L19, mitochondrial [Gossypium raimondii])

HSP 1 Score: 298.9 bits (764), Expect = 5.1e-78
Identity = 146/155 (94.19%), Postives = 153/155 (98.71%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           M+TLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK D
Sbjct: 1   MSTLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKV 120
           TPM+VTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSV+HIYEIAK+
Sbjct: 61  TPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVRHIYEIAKI 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYM LESICKSIIGTAN+MGIKVVK+L+
Sbjct: 121 KQSDPYCQYMSLESICKSIIGTANTMGIKVVKDLD 155

[Close]
BLAST of ClCG02G024110 vs. NCBI nr
Match: gi|590701799|ref|XP_007046480.1| (Mitochondrial ribosomal protein L11 [Theobroma cacao])

HSP 1 Score: 296.6 bits (758), Expect = 2.5e-77
Identity = 145/155 (93.55%), Postives = 151/155 (97.42%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           M+TLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK D
Sbjct: 1   MSTLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEF VKSPSVTWYLKKAAGIESGSSRPGHV+ATTLSV+HIYEIAK+
Sbjct: 61  TPMAVTITAFKDNTFEFIVKSPSVTWYLKKAAGIESGSSRPGHVIATTLSVRHIYEIAKI 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYM LESICKSIIGTAN+MGIKVV EL+
Sbjct: 121 KQSDPYCQYMSLESICKSIIGTANTMGIKVVNELD 155

[Close]
BLAST of ClCG02G024110 vs. NCBI nr
Match: gi|641852647|gb|KDO71512.1| (hypothetical protein CISIN_1g031693mg [Citrus sinensis])

HSP 1 Score: 295.8 bits (756), Expect = 4.3e-77
Identity = 145/155 (93.55%), Postives = 152/155 (98.06%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK +
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKV 120
           TPM+VTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHV A+T+++KHIYEIAKV
Sbjct: 61  TPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYMPLESICKSIIGTA +MGIKVVKELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTAATMGIKVVKELE 155

The following BLAST results are available for this feature:
BLAST of ClCG02G024110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RM19_SCHPO1.7e-3351.8554S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 97... [more]
RL11_PARL12.0e-2947.1850S ribosomal protein L11 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 130... [more]
RL11_RHOP52.6e-2946.4350S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplK ... [more]
RM11_HUMAN2.6e-2945.9539S ribosomal protein L11, mitochondrial OS=Homo sapiens GN=MRPL11 PE=1 SV=1[more]
RM11_DROME3.4e-2938.0639S ribosomal protein L11, mitochondrial OS=Drosophila melanogaster GN=mRpL11 PE... [more]
BLAST of ClCG02G024110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWT6_CUCSA1.9e-7996.77Uncharacterized protein OS=Cucumis sativus GN=Csa_4G279840 PE=3 SV=1[more]
A0A0D2NBV6_GOSRA3.6e-7894.19Uncharacterized protein OS=Gossypium raimondii GN=B456_001G199600 PE=3 SV=1[more]
A0A061DFE6_THECC1.8e-7793.55Mitochondrial ribosomal protein L11 OS=Theobroma cacao GN=TCM_000052 PE=3 SV=1[more]
A0A067G7I7_CITSI3.0e-7793.55Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031693mg PE=3 SV=1[more]
V4RUW5_9ROSI6.7e-7792.90Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026688mg PE=3 SV=1[more]
BLAST of ClCG02G024110 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G35490.12.1e-7485.71 mitochondrial ribosomal protein L11[more]
AT1G32990.12.9e-2343.57 plastid ribosomal protein l11[more]
AT5G51610.16.6e-0732.91 Ribosomal protein L11 family protein[more]
BLAST of ClCG02G024110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659097841|ref|XP_008449842.1|2.1e-7996.77PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis melo][more]
gi|449448846|ref|XP_004142176.1|2.7e-7996.77PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis sativus][more]
gi|823126060|ref|XP_012487400.1|5.1e-7894.19PREDICTED: 54S ribosomal protein L19, mitochondrial [Gossypium raimondii][more]
gi|590701799|ref|XP_007046480.1|2.5e-7793.55Mitochondrial ribosomal protein L11 [Theobroma cacao][more]
gi|641852647|gb|KDO71512.1|4.3e-7793.55hypothetical protein CISIN_1g031693mg [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000911Ribosomal_L11/L12
IPR006519Ribosomal_L11_bac-typ
IPR020783Ribosomal_L11_C
IPR020784Ribosomal_L11_N
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0000027 ribosomal large subunit assembly
cellular_component GO:0005840 ribosome
cellular_component GO:0005762 mitochondrial large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G024110.1ClCG02G024110.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000911Ribosomal protein L11/L12HAMAPMF_00736Ribosomal_L11coord: 13..152
score: 25
IPR000911Ribosomal protein L11/L12PANTHERPTHR1166160S RIBOSOMAL PROTEIN L12coord: 5..154
score: 1.7
IPR000911Ribosomal protein L11/L12SMARTSM00649rl11ccoord: 17..151
score: 5.3
IPR006519Ribosomal protein L11, bacterial-typeTIGRFAMsTIGR01632TIGR01632coord: 13..152
score: 6.4
IPR020783Ribosomal protein L11, C-terminalGENE3DG3DSA:1.10.10.250coord: 81..151
score: 1.4
IPR020783Ribosomal protein L11, C-terminalPFAMPF00298Ribosomal_L11coord: 80..150
score: 7.2
IPR020783Ribosomal protein L11, C-terminalunknownSSF46906Ribosomal protein L11, C-terminal domaincoord: 76..151
score: 1.18
IPR020784Ribosomal protein L11, N-terminalGENE3DG3DSA:3.30.1550.10coord: 12..80
score: 3.5
IPR020784Ribosomal protein L11, N-terminalPFAMPF03946Ribosomal_L11_Ncoord: 17..75
score: 1.2
IPR020784Ribosomal protein L11, N-terminalunknownSSF54747Ribosomal L11/L12e N-terminal domaincoord: 13..80
score: 7.72
NoneNo IPR availablePRODOMPD001367coord: 44..82
score: 2.0
NoneNo IPR availablePANTHERPTHR11661:SF139S RIBOSOMAL PROTEIN L11, MITOCHONDRIALcoord: 5..154
score: 1.7