CSPI04G12860 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G12860
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
Description50S ribosomal protein L11
LocationChr4 : 11117437 .. 11118597 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCGATTTCACAGGGAAAGGAGGTTCCGGCGAACAGGTATGGCCACCTTGAAAGAGATTCTGACCAGACGACCCGTCGCTGCCACCATCAGGCTCACCGTCCCTGCTGGTGGAGCTCGCCCTGCGCCACCGGTGGGTCCAGCGCTTGGTCAATACCGGCTGAATCTGATGGCTTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAACCCGAGACACCCATGGCCGTAACCATTACAGCTTTCAAGGACAACACCTTCGAGTTCACCGTCAAATCACCGTCAGTTACTTGGTACTTGAAGAAAGCTGCTGGGATCGAATCTGGGAGCAGCCGCCCAGGCCACGTAGTCGCCTCCACGCTCTCAGTCAAGCACATTTATGAGATCGCTAAAGTCAAGCAATCTGATCCTTATTGCCAGTACATGCCACTAGAATCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAAGTCCTTAACGAATTGGAGTAATGCAACAGCTAAATTTCTAGGGTTTTATTTTTCTCCTATTGTTCTTCAGTATCTCGATTTAAATTGAGTGTTTTTTGCAGTCACCTACATCTTCTTACTGTGAATTAATGTTATTATTCCGTATGCTAAGTCGGCTATCTAATCCTGACAGTTTGAGTTTCTCTAGAAATTGAACCAATTCCAGCAATTTGCTCCTGAATGTCAAAGAAAATGGGGCTAGGATAATAGCTAAATAAAAGTGCTTTTTTTTTCCATTAGATTTTGCTATTGAACAATGGCCATTCTGTGAGTTGTGAACTGATTTCATTTTGATGAACCAGTTAGTGATGAACTACCCCCAATTCAATATCTCTGGTCCAATTTACTGAATTTGATGAACTCTGTGAAACTGTTATTGTGGGTTTTCATGTTTAGCAGTAGTCTTGGTTCCTCATTCACCTCTCATCTCTTGTTGATTAGCTTAGTGGGATTGTATATGTGTTCTAGATGGACAACACTTATCTAACTCTTCCTAGTTCAATCATTAGTGGTCATCTACTGATAATTAATTTTCTATACAGTAGAGTAAGCTTGATTTGTCCAGGTGCACGTAACTGGTTGGATGGACACTCACGGATATGAAAGAGAAAGATAGATAATTGTTGTAGATAGCAG

mRNA sequence

ATGGCCACCTTGAAAGAGATTCTGACCAGACGACCCGTCGCTGCCACCATCAGGCTCACCGTCCCTGCTGGTGGAGCTCGCCCTGCGCCACCGGTGGGTCCAGCGCTTGGTCAATACCGGCTGAATCTGATGGCTTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAACCCGAGACACCCATGGCCGTAACCATTACAGCTTTCAAGGACAACACCTTCGAGTTCACCGTCAAATCACCGTCAGTTACTTGGTACTTGAAGAAAGCTGCTGGGATCGAATCTGGGAGCAGCCGCCCAGGCCACGTAGTCGCCTCCACGCTCTCAGTCAAGCACATTTATGAGATCGCTAAAGTCAAGCAATCTGATCCTTATTGCCAGTACATGCCACTAGAATCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAAGTCCTTAACGAATTGGAGTAA

Coding sequence (CDS)

ATGGCCACCTTGAAAGAGATTCTGACCAGACGACCCGTCGCTGCCACCATCAGGCTCACCGTCCCTGCTGGTGGAGCTCGCCCTGCGCCACCGGTGGGTCCAGCGCTTGGTCAATACCGGCTGAATCTGATGGCTTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAACCCGAGACACCCATGGCCGTAACCATTACAGCTTTCAAGGACAACACCTTCGAGTTCACCGTCAAATCACCGTCAGTTACTTGGTACTTGAAGAAAGCTGCTGGGATCGAATCTGGGAGCAGCCGCCCAGGCCACGTAGTCGCCTCCACGCTCTCAGTCAAGCACATTTATGAGATCGCTAAAGTCAAGCAATCTGATCCTTATTGCCAGTACATGCCACTAGAATCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAAGTCCTTAACGAATTGGAGTAA
Homology
[Close]
BLAST of CSPI04G12860 vs. Swiss-Prot
Match: RM19_SCHPO (54S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl19 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.5e-34
Identity = 70/135 (51.85%), Postives = 90/135 (66.67%), Query Frame = 1 

Query: 17  IRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMAVTITAFKDNTFE 76
           I+L VPAG A P PP+GPALG   L  + FCK+FNART  + P TP+   IT     TF 
Sbjct: 9   IKLIVPAGKATPTPPIGPALGARGLKSIDFCKEFNARTAGWMPNTPVPCKITVTPQRTFT 68

Query: 77  FTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYMPLESIC 136
           FT+ +P  +W + K   +E GSS P H +   LS+KHIYEIAK+K +DP  Q + L S+C
Sbjct: 69  FTIHTPPTSWLISKTLDLEKGSSSPLHDIKGQLSLKHIYEIAKLKSTDPSLQGIELLSLC 128

Query: 137 KSIIGTANSMGIKVL 152
           KS+IGTA SMG+KV+
Sbjct: 129 KSVIGTAKSMGVKVV 143

[Close]
BLAST of CSPI04G12860 vs. Swiss-Prot
Match: RL11_RHOP5 (50S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplK PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.6e-29
Identity = 65/140 (46.43%), Postives = 94/140 (67.14%), Query Frame = 1 

Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMAVTITAF 70
           + V   ++L VPAG A P+PP+GPALGQ  LN+M FCK+FNA+TQK +  TP+ V IT +
Sbjct: 3   KKVTGYLKLQVPAGAANPSPPIGPALGQRGLNIMEFCKNFNAQTQKEEKNTPIPVVITIY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYM 130
            D +F F +K+P ++++LK+AA I+SGS  PG  VA  +S   + EIA+ K  D  C   
Sbjct: 63  ADRSFTFEMKTPPMSFFLKQAAKIQSGSKLPGRDVAGKVSSAQVREIAERKMKDLNCD-- 122

Query: 131 PLESICKSIIGTANSMGIKV 151
            +ES  + + G+A SMG++V
Sbjct: 123 SIESAMRMVEGSARSMGLQV 140

[Close]
BLAST of CSPI04G12860 vs. Swiss-Prot
Match: RL11_AQUAE (50S ribosomal protein L11 OS=Aquifex aeolicus (strain VF5) GN=rplK PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.6e-29
Identity = 66/140 (47.14%), Postives = 94/140 (67.14%), Query Frame = 1 

Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMAVTITAF 70
           + V ATI L +PA  A PAPPVGPALGQ+ +N+M F K FNA ++ Y+P T + V IT +
Sbjct: 3   KKVVATIELMLPAQQASPAPPVGPALGQHGVNIMEFVKQFNAASRDYEPGTILPVVITVY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYM 130
           +D +F F +K+P V++ LKKAAG+E GSS P  V    ++VK + EIAK+K  D      
Sbjct: 63  QDRSFTFIMKTPPVSYLLKKAAGVEKGSSDPKRVKVGKITVKQLEEIAKMKMKD--MNTR 122

Query: 131 PLESICKSIIGTANSMGIKV 151
            L++  +++ GTA SMGI++
Sbjct: 123 DLKAAMRTVAGTAKSMGIEI 140

[Close]
BLAST of CSPI04G12860 vs. Swiss-Prot
Match: RL11_PARL1 (50S ribosomal protein L11 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplK PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.6e-29
Identity = 66/141 (46.81%), Postives = 90/141 (63.83%), Query Frame = 1 

Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMAVTITAF 70
           + +   I+L VPAG A P+PP+GPALGQ  LN+M FCK FNA TQK +   P+ V ITAF
Sbjct: 3   KKIEGYIKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAATQKMEQGMPIPVVITAF 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYM 130
            D +F F +K+P  +++LKKAA + SGS  PG   A T++V    EIA+ K +D      
Sbjct: 63  SDRSFTFAMKTPPASYFLKKAAKVTSGSKTPGRASAGTVTVAQCREIAEAKMAD--LNAN 122

Query: 131 PLESICKSIIGTANSMGIKVL 152
            L+   K I G+A SMG++V+
Sbjct: 123 DLDQATKIIAGSARSMGLQVV 141

[Close]
BLAST of CSPI04G12860 vs. Swiss-Prot
Match: RL11_BLOFL (50S ribosomal protein L11 OS=Blochmannia floridanus GN=rplK PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 9.9e-29
Identity = 65/148 (43.92%), Postives = 96/148 (64.86%), Query Frame = 1 

Query: 7   ILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMAVT 66
           ++ ++ V + I+L + A  A P+PP+GPALGQ  +N+M FCKDFN RT  ++    + V 
Sbjct: 1   MIVKKKVQSCIKLQIEARSATPSPPIGPALGQQGINIMKFCKDFNTRTADFEMGLILPVV 60

Query: 67  ITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPY 126
           IT + D +F F +K+P+  + LKKAAGI+SGS +P  V    + +  IYEIAK+K  D  
Sbjct: 61  ITVYVDRSFSFVIKTPTAVFLLKKAAGIKSGSEKPKCVSVGKVLISQIYEIAKIKLID-- 120

Query: 127 CQYMPLESICKSIIGTANSMGIKVLNEL 155
              + LES  KSI+GTA S+G++V + L
Sbjct: 121 MTSLNLESASKSIMGTARSIGLEVEDNL 146

[Close]
BLAST of CSPI04G12860 vs. TrEMBL
Match: A0A0A0KWT6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G279840 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 7.0e-82
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of CSPI04G12860 vs. TrEMBL
Match: A0A067G7I7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031693mg PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.0e-77
Identity = 146/155 (94.19%), Postives = 152/155 (98.06%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPM+VTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHV AST+++KHIYEIAKV
Sbjct: 61  TPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYMPLESICKSIIGTA +MGIKV+ ELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTAATMGIKVVKELE 155

[Close]
BLAST of CSPI04G12860 vs. TrEMBL
Match: A0A061DFE6_THECC (Mitochondrial ribosomal protein L11 OS=Theobroma cacao GN=TCM_000052 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.4e-77
Identity = 144/155 (92.90%), Postives = 153/155 (98.71%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60
           M+TLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+
Sbjct: 1   MSTLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEF VKSPSVTWYLKKAAGIESGSSRPGHV+A+TLSV+HIYEIAK+
Sbjct: 61  TPMAVTITAFKDNTFEFIVKSPSVTWYLKKAAGIESGSSRPGHVIATTLSVRHIYEIAKI 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYM LESICKSIIGTAN+MGIKV+NEL+
Sbjct: 121 KQSDPYCQYMSLESICKSIIGTANTMGIKVVNELD 155

[Close]
BLAST of CSPI04G12860 vs. TrEMBL
Match: V4RUW5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026688mg PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.3e-77
Identity = 145/155 (93.55%), Postives = 152/155 (98.06%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPM+VTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHV AST+++KHIYEIAKV
Sbjct: 61  TPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYMPLESICKSIIGTA +MGIKV+ EL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTAATMGIKVVKELD 155

[Close]
BLAST of CSPI04G12860 vs. TrEMBL
Match: A0A0D2NBV6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G199600 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 5.2e-77
Identity = 143/155 (92.26%), Postives = 153/155 (98.71%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60
           M+TLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+
Sbjct: 1   MSTLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPM+VTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVA+TLSV+HIYEIAK+
Sbjct: 61  TPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVRHIYEIAKI 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYM LESICKSIIGTAN+MGIKV+ +L+
Sbjct: 121 KQSDPYCQYMSLESICKSIIGTANTMGIKVVKDLD 155

[Close]
BLAST of CSPI04G12860 vs. TAIR10
Match: AT4G35490.1 (AT4G35490.1 mitochondrial ribosomal protein L11)

HSP 1 Score: 273.5 bits (698), Expect = 8.2e-74
Identity = 130/154 (84.42%), Postives = 147/154 (95.45%), Query Frame = 1 

Query: 2   ATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPET 61
           A  KEIL RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+T
Sbjct: 3   AAAKEIL-RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT 62

Query: 62  PMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVK 121
           PMAVTITAFKDN+FEFTVKSP+V+WY+KKAAG++ GS+RPGH+  +TLSV+H+YEIAKVK
Sbjct: 63  PMAVTITAFKDNSFEFTVKSPTVSWYIKKAAGVDKGSTRPGHLSVTTLSVRHVYEIAKVK 122

Query: 122 QSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           Q+DP+CQYMPLESICKSIIGTANSMGIK++ +LE
Sbjct: 123 QTDPFCQYMPLESICKSIIGTANSMGIKIVQDLE 155

[Close]
BLAST of CSPI04G12860 vs. TAIR10
Match: AT1G32990.1 (AT1G32990.1 plastid ribosomal protein l11)

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-22
Identity = 60/140 (42.86%), Postives = 80/140 (57.14%), Query Frame = 1 

Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMAVTITAF 70
           + V   I+L + AG A PAPPVGPALG   +N+MAFCKD+NART   K    + V IT F
Sbjct: 72  KKVVGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTAD-KAGYIIPVEITVF 131

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYM 130
            D +F F +K+P  +  L KAAG+E GS  P       +++  +  IA  K  D  C   
Sbjct: 132 DDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNC--T 191

Query: 131 PLESICKSIIGTANSMGIKV 151
            +ES  + I GTA +MGI +
Sbjct: 192 TIESAMRIIAGTAANMGIDI 208

[Close]
BLAST of CSPI04G12860 vs. TAIR10
Match: AT5G51610.1 (AT5G51610.1 Ribosomal protein L11 family protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.3e-07
Identity = 26/79 (32.91%), Postives = 46/79 (58.23%), Query Frame = 1 

Query: 72  DNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYMP 131
           D +F F +K+P  ++ L KAAG++ GS  P  +    +++  + +IA+VK  +  C    
Sbjct: 92  DQSFTFILKTPPTSFLLLKAAGVKKGSKDPKQIKVGMITIDQVRKIAEVKLPELNC--TT 151

Query: 132 LESICKSIIGTANSMGIKV 151
           + S  ++I GTA +MGI +
Sbjct: 152 IVSTMRTIAGTAGNMGIDI 168

[Close]
BLAST of CSPI04G12860 vs. NCBI nr
Match: gi|449448846|ref|XP_004142176.1| (PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis sativus])

HSP 1 Score: 311.2 bits (796), Expect = 1.0e-81
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of CSPI04G12860 vs. NCBI nr
Match: gi|659097841|ref|XP_008449842.1| (PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis melo])

HSP 1 Score: 308.9 bits (790), Expect = 5.0e-81
Identity = 153/155 (98.71%), Postives = 155/155 (100.00%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of CSPI04G12860 vs. NCBI nr
Match: gi|641852647|gb|KDO71512.1| (hypothetical protein CISIN_1g031693mg [Citrus sinensis])

HSP 1 Score: 297.4 bits (760), Expect = 1.5e-77
Identity = 146/155 (94.19%), Postives = 152/155 (98.06%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPM+VTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHV AST+++KHIYEIAKV
Sbjct: 61  TPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYMPLESICKSIIGTA +MGIKV+ ELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTAATMGIKVVKELE 155

[Close]
BLAST of CSPI04G12860 vs. NCBI nr
Match: gi|590701799|ref|XP_007046480.1| (Mitochondrial ribosomal protein L11 [Theobroma cacao])

HSP 1 Score: 297.0 bits (759), Expect = 2.0e-77
Identity = 144/155 (92.90%), Postives = 153/155 (98.71%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60
           M+TLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+
Sbjct: 1   MSTLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEF VKSPSVTWYLKKAAGIESGSSRPGHV+A+TLSV+HIYEIAK+
Sbjct: 61  TPMAVTITAFKDNTFEFIVKSPSVTWYLKKAAGIESGSSRPGHVIATTLSVRHIYEIAKI 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYM LESICKSIIGTAN+MGIKV+NEL+
Sbjct: 121 KQSDPYCQYMSLESICKSIIGTANTMGIKVVNELD 155

[Close]
BLAST of CSPI04G12860 vs. NCBI nr
Match: gi|567865291|ref|XP_006425268.1| (hypothetical protein CICLE_v10026688mg [Citrus clementina])

HSP 1 Score: 296.2 bits (757), Expect = 3.3e-77
Identity = 145/155 (93.55%), Postives = 152/155 (98.06%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPM+VTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHV AST+++KHIYEIAKV
Sbjct: 61  TPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYMPLESICKSIIGTA +MGIKV+ EL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTAATMGIKVVKELD 155

The following BLAST results are available for this feature:
BLAST of CSPI04G12860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RM19_SCHPO3.5e-3451.8554S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 97... [more]
RL11_RHOP52.6e-2946.4350S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplK ... [more]
RL11_AQUAE2.6e-2947.1450S ribosomal protein L11 OS=Aquifex aeolicus (strain VF5) GN=rplK PE=3 SV=1[more]
RL11_PARL17.6e-2946.8150S ribosomal protein L11 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 130... [more]
RL11_BLOFL9.9e-2943.9250S ribosomal protein L11 OS=Blochmannia floridanus GN=rplK PE=3 SV=1[more]
BLAST of CSPI04G12860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWT6_CUCSA7.0e-82100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G279840 PE=3 SV=1[more]
A0A067G7I7_CITSI1.0e-7794.19Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031693mg PE=3 SV=1[more]
A0A061DFE6_THECC1.4e-7792.90Mitochondrial ribosomal protein L11 OS=Theobroma cacao GN=TCM_000052 PE=3 SV=1[more]
V4RUW5_9ROSI2.3e-7793.55Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026688mg PE=3 SV=1[more]
A0A0D2NBV6_GOSRA5.2e-7792.26Uncharacterized protein OS=Gossypium raimondii GN=B456_001G199600 PE=3 SV=1[more]
BLAST of CSPI04G12860 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G35490.18.2e-7484.42 mitochondrial ribosomal protein L11[more]
AT1G32990.11.1e-2242.86 plastid ribosomal protein l11[more]
AT5G51610.12.3e-0732.91 Ribosomal protein L11 family protein[more]
BLAST of CSPI04G12860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449448846|ref|XP_004142176.1|1.0e-81100.00PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis sativus][more]
gi|659097841|ref|XP_008449842.1|5.0e-8198.71PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis melo][more]
gi|641852647|gb|KDO71512.1|1.5e-7794.19hypothetical protein CISIN_1g031693mg [Citrus sinensis][more]
gi|590701799|ref|XP_007046480.1|2.0e-7792.90Mitochondrial ribosomal protein L11 [Theobroma cacao][more]
gi|567865291|ref|XP_006425268.1|3.3e-7793.55hypothetical protein CICLE_v10026688mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000911Ribosomal_L11/L12
IPR006519Ribosomal_L11_bac-typ
IPR020783Ribosomal_L11_C
IPR020784Ribosomal_L11_N
IPR020785Ribosomal_L11_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G12860.1CSPI04G12860.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000911Ribosomal protein L11/L12HAMAPMF_00736Ribosomal_L11coord: 13..152
score: 25
IPR000911Ribosomal protein L11/L12PANTHERPTHR1166160S RIBOSOMAL PROTEIN L12coord: 5..155
score: 2.6
IPR000911Ribosomal protein L11/L12SMARTSM00649rl11ccoord: 17..151
score: 3.1
IPR006519Ribosomal protein L11, bacterial-typeTIGRFAMsTIGR01632TIGR01632coord: 13..150
score: 1.8
IPR020783Ribosomal protein L11, C-terminalGENE3DG3DSA:1.10.10.250coord: 81..150
score: 2.8
IPR020783Ribosomal protein L11, C-terminalPFAMPF00298Ribosomal_L11coord: 80..150
score: 5.9
IPR020783Ribosomal protein L11, C-terminalunknownSSF46906Ribosomal protein L11, C-terminal domaincoord: 76..150
score: 1.18
IPR020784Ribosomal protein L11, N-terminalGENE3DG3DSA:3.30.1550.10coord: 12..80
score: 5.9
IPR020784Ribosomal protein L11, N-terminalPFAMPF03946Ribosomal_L11_Ncoord: 17..75
score: 1.9
IPR020784Ribosomal protein L11, N-terminalunknownSSF54747Ribosomal L11/L12e N-terminal domaincoord: 13..80
score: 1.13
IPR020785Ribosomal protein L11, conserved sitePROSITEPS00359RIBOSOMAL_L11coord: 137..152
scor
NoneNo IPR availablePRODOMPD001367coord: 44..82
score: 6.0
NoneNo IPR availablePANTHERPTHR11661:SF139S RIBOSOMAL PROTEIN L11, MITOCHONDRIALcoord: 5..155
score: 2.6