CsaV3_4G016040 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G016040
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 10624101 .. 10624341 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCTCAACAACTATCTCCCCTCATAAAGGAACACCGCTGGACAAATGCAAGAAACCCTTTGTCTCGGGTTTATCTAACGCTGACAATCTCTATGAAGCCCTATTCGGTACCTTCTTTGGTCCACGACATGCCCTCCCCATGGGCTCTGTTCCGTCATCCTCATGGCTTGGCTCATCGGCTCCTCGAAAACTACTTAAAACCATTATTGAAGATCTATTCACTGAGTTCGCTCAAGATCTAG

mRNA sequence

GCCTCAACAACTATCTCCCCTCATAAAGGAACACCGCTGGACAAATGCAAGAAACCCTTTGTCTCGGGTTTATCTAACGCTGACAATCTCTATGAAGCCCTATTCGGTACCTTCTTTGGTCCACGACATGCCCTCCCCATGGGCTCTGTTCCGTCATCCTCATGGCTTGGCTCATCGGCTCCTCGAAAACTACTTAAAACCATTATTGAAGATCTATTCACTGAGTTCGCTCAAGATCTAG

Coding sequence (CDS)

GCCTCAACAACTATCTCCCCTCATAAAGGAACACCGCTGGACAAATGCAAGAAACCCTTTGTCTCGGGTTTATCTAACGCTGACAATCTCTATGAAGCCCTATTCGGTACCTTCTTTGGTCCACGACATGCCCTCCCCATGGGCTCTGTTCCGTCATCCTCATGGCTTGGCTCATCGGCTCCTCGAAAACTACTTAAAACCATTATTGAAGATCTATTCACTGAGTTCGCTCAAGATCTAG

Protein sequence

ASTTISPHKGTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHALPMGSVPSSSWLGSSAPRKLLKTIIEDLFTEFAQDLX
Homology
[Close]
BLAST of CsaV3_4G016040 vs. NCBI nr
Match: KGN54004.1 (hypothetical protein Csa_4G256930 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 3.9e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 10 GTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHALPMGSVPSSSWLGSSAPRKLLKTII 69
          GTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHALPMGSVPSSSWLGSSAPRKLLKTII
Sbjct: 26 GTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHALPMGSVPSSSWLGSSAPRKLLKTII 85

Query: 70 EDLFTEFAQDL 81
          EDLFTEFAQDL
Sbjct: 86 EDLFTEFAQDL 96

[Close]
BLAST of CsaV3_4G016040 vs. TrEMBL
Match: tr|A0A0A0KYY8|A0A0A0KYY8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G256930 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.6e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 10 GTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHALPMGSVPSSSWLGSSAPRKLLKTII 69
          GTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHALPMGSVPSSSWLGSSAPRKLLKTII
Sbjct: 26 GTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHALPMGSVPSSSWLGSSAPRKLLKTII 85

Query: 70 EDLFTEFAQDL 81
          EDLFTEFAQDL
Sbjct: 86 EDLFTEFAQDL 96

The following BLAST results are available for this feature:
BLAST of CsaV3_4G016040 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54004.13.9e-33100.00hypothetical protein Csa_4G256930 [Cucumis sativus][more]
BLAST of CsaV3_4G016040 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G016040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G016040 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KYY8|A0A0A0KYY8_CUCSA2.6e-33100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G256930 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G016040.1CsaV3_4G016040.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G016040CSPI04G12380Wild cucumber (PI 183967)cpicucB216
CsaV3_4G016040CsGy4G011390Cucumber (Gy14) v2cgybcucB171
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None