CSPI04G12380 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G12380
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 10786378 .. 10786819 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCTTCCATCCATGCAACTTCTCCAACACAATCAACCAAAACCTCTACGACATCATCATCTTGTCGTGCCAGGTTTCACGTATCTGACTTTGAATCCATCAAACCATTGTTGTTGACTCTGGCTCCTCAAGTGAAGACAATGTGATTTTGTCTAATATTCTCAAATGAAAGGCCTCAACAACTATCTCCCCTCATAAAGGAACACCGCTGGACAAATGCAAGAAACCCTTTGTCTCGGGTTTATCTAACGCTGACAATCTCTATGAAGCCCTATTCGGTACCTTCTTTGGTCCACGACATGCCCTCCCCATGGGCTCTGTTCCGTCATCCTCATGGCTTGACTCATCGGCTCCTCGAAAACTACTTAAAACCATTATTGAAGATCTATTCACTGAGTTCGCTCAAGATCTAGAAGGACTCTCCTCCAGGCTTCATTAG

mRNA sequence

ATGTCGCTTCCATCCATGCAACTTCTCCAACACAATCAACCAAAACCTCTACGACATCATCATCTTGTCGTGCCAGGAACACCGCTGGACAAATGCAAGAAACCCTTTGTCTCGGGTTTATCTAACGCTGACAATCTCTATGAAGCCCTATTCGGTACCTTCTTTGGTCCACGACATGCCCTCCCCATGGGCTCTGTTCCGTCATCCTCATGGCTTGACTCATCGGCTCCTCGAAAACTACTTAAAACCATTATTGAAGATCTATTCACTGAGTTCGCTCAAGATCTAGAAGGACTCTCCTCCAGGCTTCATTAG

Coding sequence (CDS)

ATGTCGCTTCCATCCATGCAACTTCTCCAACACAATCAACCAAAACCTCTACGACATCATCATCTTGTCGTGCCAGGAACACCGCTGGACAAATGCAAGAAACCCTTTGTCTCGGGTTTATCTAACGCTGACAATCTCTATGAAGCCCTATTCGGTACCTTCTTTGGTCCACGACATGCCCTCCCCATGGGCTCTGTTCCGTCATCCTCATGGCTTGACTCATCGGCTCCTCGAAAACTACTTAAAACCATTATTGAAGATCTATTCACTGAGTTCGCTCAAGATCTAGAAGGACTCTCCTCCAGGCTTCATTAG
Homology
[Close]
BLAST of CSPI04G12380 vs. TrEMBL
Match: A0A0A0KYY8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G256930 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.1e-53
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 1 

Query: 1   MSLPSMQLLQHNQPKPLRHHHLVVPGTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHA 60
           MSLPSMQLLQHNQPKPLRHHHLVVPGTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHA
Sbjct: 1   MSLPSMQLLQHNQPKPLRHHHLVVPGTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHA 60

Query: 61  LPMGSVPSSSWLDSSAPRKLLKTIIEDLFTEFAQDLEGLSSRLH 105
           LPMGSVPSSSWL SSAPRKLLKTIIEDLFTEFAQDLEGLSSRLH
Sbjct: 61  LPMGSVPSSSWLGSSAPRKLLKTIIEDLFTEFAQDLEGLSSRLH 104

[Close]
BLAST of CSPI04G12380 vs. NCBI nr
Match: gi|700198846|gb|KGN54004.1| (hypothetical protein Csa_4G256930 [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 3.0e-53
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 1 

Query: 1   MSLPSMQLLQHNQPKPLRHHHLVVPGTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHA 60
           MSLPSMQLLQHNQPKPLRHHHLVVPGTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHA
Sbjct: 1   MSLPSMQLLQHNQPKPLRHHHLVVPGTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHA 60

Query: 61  LPMGSVPSSSWLDSSAPRKLLKTIIEDLFTEFAQDLEGLSSRLH 105
           LPMGSVPSSSWL SSAPRKLLKTIIEDLFTEFAQDLEGLSSRLH
Sbjct: 61  LPMGSVPSSSWLGSSAPRKLLKTIIEDLFTEFAQDLEGLSSRLH 104

The following BLAST results are available for this feature:
BLAST of CSPI04G12380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G12380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYY8_CUCSA2.1e-5399.04Uncharacterized protein OS=Cucumis sativus GN=Csa_4G256930 PE=4 SV=1[more]
BLAST of CSPI04G12380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G12380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198846|gb|KGN54004.1|3.0e-5399.04hypothetical protein Csa_4G256930 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G12380.1CSPI04G12380.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G12380Csa4G256930Cucumber (Chinese Long) v2cpicuB181
CSPI04G12380CsaV3_4G016040Cucumber (Chinese Long) v3cpicucB216
CSPI04G12380CsGy4G011390Cucumber (Gy14) v2cgybcpiB171
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None