CSPI04G12380.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G12380.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr4 : 10786378 .. 10786819 (-)
Sequence length	315

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCTTCCATCCATGCAACTTCTCCAACACAATCAACCAAAACCTCTACGACATCATCATCTTGTCGTGCCAGGTTTCACGTATCTGACTTTGAATCCATCAAACCATTGTTGTTGACTCTGGCTCCTCAAGTGAAGACAATGTGATTTTGTCTAATATTCTCAAATGAAAGGCCTCAACAACTATCTCCCCTCATAAAGGAACACCGCTGGACAAATGCAAGAAACCCTTTGTCTCGGGTTTATCTAACGCTGACAATCTCTATGAAGCCCTATTCGGTACCTTCTTTGGTCCACGACATGCCCTCCCCATGGGCTCTGTTCCGTCATCCTCATGGCTTGACTCATCGGCTCCTCGAAAACTACTTAAAACCATTATTGAAGATCTATTCACTGAGTTCGCTCAAGATCTAGAAGGACTCTCCTCCAGGCTTCATTAG

mRNA sequence

ATGTCGCTTCCATCCATGCAACTTCTCCAACACAATCAACCAAAACCTCTACGACATCATCATCTTGTCGTGCCAGGAACACCGCTGGACAAATGCAAGAAACCCTTTGTCTCGGGTTTATCTAACGCTGACAATCTCTATGAAGCCCTATTCGGTACCTTCTTTGGTCCACGACATGCCCTCCCCATGGGCTCTGTTCCGTCATCCTCATGGCTTGACTCATCGGCTCCTCGAAAACTACTTAAAACCATTATTGAAGATCTATTCACTGAGTTCGCTCAAGATCTAGAAGGACTCTCCTCCAGGCTTCATTAG

Coding sequence (CDS)

ATGTCGCTTCCATCCATGCAACTTCTCCAACACAATCAACCAAAACCTCTACGACATCATCATCTTGTCGTGCCAGGAACACCGCTGGACAAATGCAAGAAACCCTTTGTCTCGGGTTTATCTAACGCTGACAATCTCTATGAAGCCCTATTCGGTACCTTCTTTGGTCCACGACATGCCCTCCCCATGGGCTCTGTTCCGTCATCCTCATGGCTTGACTCATCGGCTCCTCGAAAACTACTTAAAACCATTATTGAAGATCTATTCACTGAGTTCGCTCAAGATCTAGAAGGACTCTCCTCCAGGCTTCATTAG

Homology

[Close]

BLAST of CSPI04G12380.1 vs. TrEMBL
Match: A0A0A0KYY8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G256930 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.1e-53
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 1


Query: 1   MSLPSMQLLQHNQPKPLRHHHLVVPGTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHA 60
           MSLPSMQLLQHNQPKPLRHHHLVVPGTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHA
Sbjct: 1   MSLPSMQLLQHNQPKPLRHHHLVVPGTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHA 60

Query: 61  LPMGSVPSSSWLDSSAPRKLLKTIIEDLFTEFAQDLEGLSSRLH 105
           LPMGSVPSSSWL SSAPRKLLKTIIEDLFTEFAQDLEGLSSRLH
Sbjct: 61  LPMGSVPSSSWLGSSAPRKLLKTIIEDLFTEFAQDLEGLSSRLH 104

[Close]

BLAST of CSPI04G12380.1 vs. NCBI nr
Match: gi|700198846|gb|KGN54004.1| (hypothetical protein Csa_4G256930 [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 3.0e-53
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 1


Query: 1   MSLPSMQLLQHNQPKPLRHHHLVVPGTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHA 60
           MSLPSMQLLQHNQPKPLRHHHLVVPGTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHA
Sbjct: 1   MSLPSMQLLQHNQPKPLRHHHLVVPGTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHA 60

Query: 61  LPMGSVPSSSWLDSSAPRKLLKTIIEDLFTEFAQDLEGLSSRLH 105
           LPMGSVPSSSWL SSAPRKLLKTIIEDLFTEFAQDLEGLSSRLH
Sbjct: 61  LPMGSVPSSSWLGSSAPRKLLKTIIEDLFTEFAQDLEGLSSRLH 104

The following BLAST results are available for this feature:

BLAST of CSPI04G12380.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G12380.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYY8_CUCSA	2.1e-53	99.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G256930 PE=4 SV=1	[more]

BLAST of CSPI04G12380.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G12380.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198846\|gb\|KGN54004.1\|	3.0e-53	99.04	hypothetical protein Csa_4G256930 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI04G12380	CSPI04G12380	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI04G12380.1	CSPI04G12380.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G12380.1.cds2	CSPI04G12380.1.cds2	CDS
CSPI04G12380.1.cds1	CSPI04G12380.1.cds1	CDS