CsaV3_4G016040.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G016040.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4 : 10624101 .. 10624341 (-)
Sequence length	241

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTCAACAACTATCTCCCCTCATAAAGGAACACCGCTGGACAAATGCAAGAAACCCTTTGTCTCGGGTTTATCTAACGCTGACAATCTCTATGAAGCCCTATTCGGTACCTTCTTTGGTCCACGACATGCCCTCCCCATGGGCTCTGTTCCGTCATCCTCATGGCTTGGCTCATCGGCTCCTCGAAAACTACTTAAAACCATTATTGAAGATCTATTCACTGAGTTCGCTCAAGATCTAG

mRNA sequence

GCCTCAACAACTATCTCCCCTCATAAAGGAACACCGCTGGACAAATGCAAGAAACCCTTTGTCTCGGGTTTATCTAACGCTGACAATCTCTATGAAGCCCTATTCGGTACCTTCTTTGGTCCACGACATGCCCTCCCCATGGGCTCTGTTCCGTCATCCTCATGGCTTGGCTCATCGGCTCCTCGAAAACTACTTAAAACCATTATTGAAGATCTATTCACTGAGTTCGCTCAAGATCTAG

Coding sequence (CDS)

GCCTCAACAACTATCTCCCCTCATAAAGGAACACCGCTGGACAAATGCAAGAAACCCTTTGTCTCGGGTTTATCTAACGCTGACAATCTCTATGAAGCCCTATTCGGTACCTTCTTTGGTCCACGACATGCCCTCCCCATGGGCTCTGTTCCGTCATCCTCATGGCTTGGCTCATCGGCTCCTCGAAAACTACTTAAAACCATTATTGAAGATCTATTCACTGAGTTCGCTCAAGATCTAG

Protein sequence

ASTTISPHKGTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHALPMGSVPSSSWLGSSAPRKLLKTIIEDLFTEFAQDLX

Homology

[Close]

BLAST of CsaV3_4G016040.1 vs. NCBI nr
Match: KGN54004.1 (hypothetical protein Csa_4G256930 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 3.9e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 10 GTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHALPMGSVPSSSWLGSSAPRKLLKTII 69
          GTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHALPMGSVPSSSWLGSSAPRKLLKTII
Sbjct: 26 GTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHALPMGSVPSSSWLGSSAPRKLLKTII 85

Query: 70 EDLFTEFAQDL 81
          EDLFTEFAQDL
Sbjct: 86 EDLFTEFAQDL 96

[Close]

BLAST of CsaV3_4G016040.1 vs. TrEMBL
Match: tr|A0A0A0KYY8|A0A0A0KYY8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G256930 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.6e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 10 GTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHALPMGSVPSSSWLGSSAPRKLLKTII 69
          GTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHALPMGSVPSSSWLGSSAPRKLLKTII
Sbjct: 26 GTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHALPMGSVPSSSWLGSSAPRKLLKTII 85

Query: 70 EDLFTEFAQDL 81
          EDLFTEFAQDL
Sbjct: 86 EDLFTEFAQDL 96

The following BLAST results are available for this feature:

BLAST of CsaV3_4G016040.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54004.1	3.9e-33	100.00	hypothetical protein Csa_4G256930 [Cucumis sativus]	[more]

BLAST of CsaV3_4G016040.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G016040.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G016040.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KYY8\|A0A0A0KYY8_CUCSA	2.6e-33	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G256930 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_4G016040	CsaV3_4G016040	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G016040.1.cds1	CsaV3_4G016040.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G016040.1.exon1	CsaV3_4G016040.1.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G016040.1	CsaV3_4G016040.1-protein	polypeptide