CsaV3_4G013280 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G013280
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	H/ACA ribonucleoprotein complex subunit
Location	chr4 : 9636172 .. 9640425 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTACACAATAATCTATTTTTTTTTTATTATATATATAGACTTCAATAATTTAATTTACGATAGAATTTGAGTTTTTTTTTTTTTAATAGAATAAAAAGAAAAGAGGTAAAGAAATAAAATGGGCAATTGGGTCAATTTAAGAAGACCCATAAAACCCTAAAAACCCTAAGCGAGAATTTTGCAATGAGCCTCCGATAAACAAAAGCTCACTCCTTTTTTCTCCTTTCCCCACATCAAGAGCAGAAGAATGAGACCTCCAAGAGGCGGCGGCGGCTTCAGAGGAGGCCGTGATGGTGGTAGAGGAGGTGGACGTGGCGGCGGTGGCAGGGGAGGTGGCCGCTTTGGTGGTCGTGGAGGCGGAGGCTTCCGTGATGAGGGTCCTCCATCTGAAGTCGTTGGTTCGTATCTACCATTATTTGCTTTTTCCTTCACCTTTCGCTTCTTTTCTTGCTACCTTGATGTTTTCAGAAAACAGTTTTTGTTACAATGCGATGTTCACTTGGGCTCCTTAAGGCAGACTAGTTATCGGTTTTTGCGTTTGTATAATCGGAAATAACGATGGATTCTGCTTTTGAACTTTCCCTCTCTCTAGCTGTTTGAACTTTGATGTTTCATGTCTATGAATGAATCACACAAGTTCACCTATATTCGTCACTAAAAATTTTTTTTCCTTGCTACAGAGGTTTCTACTTTCCTTCATGCGTGTGAGGGAGATGCAGTCACAAAGCTCACAAATGAGAAGATTCCTTTCTTTAATGCTCCTATTTATCTTCAGAACAAGACTCAGATAGGGAAAGTTGATGAAATTTTCGGCCCCATCAATGAATCTGTGAGTTCACTGGCCTTGATTTTTGTTGTTGTTTAGTTTTGATATATGATGAATGGTGTTGTTTTCATTAAAATAATGATAAATCATTGCTTTTGTTAATCTGATTCCAGTACTTCTCGATCAAAATGATGGAAGGAATTGTCGCAACCTCTTACGCTTCTGGGGATAAATTTTATATTGATCCAGCTAAACTCCTACCACTTGCTAGATTTCTCCCACAACCAAAGTACGTAACCCATCTCTTTCCTTTTTCCCACCTCAAATGAGGTCTAGAATTTGAGTTTGATCATCGAGATGTTTATTAGCATCAATTTCCAAGTTATTGCTTATGTTCATTTGTCTTGAGAGGTTTCATAGTGGCTTTTATGGTACCGCAATAAAAAAGAAGAGCTTTTTTGGTGCCCATTGCACATAGCTTTAGGTTTATTGTTCAGGAGTATGGTTTGGATAGAATTTCAGGGGTTTTTTTTTTTTGCATTTTTCTTTGTTTTTGTTGAATCTTGAACAGAGGTGGGGTAATTAGTAAAACAATCTATTATAGTTGAAACTTTGGCCTCCGAATTGAGTATAATCACGAGTAACTTGAAATACTGGTGCCATCCTGAATAGAATTTTGTCAGTTTTATTTTATTTTATTTTTTAATCTTTTTTGTTTAGATAGTAGATACATCGTTCTCTATAGTTTCCAAATTCTCGTAATTTAAACTAACAATGTAGGTTCATATTATGGGTCTGATGTGACGATGAAAAATTCCAAAACCTGTCTTTTGTGCTTCTAATATCTTATTGCTTCATTACGCGGATGTTATACTTCAGTGGCCCTATTTTGTGTTGAGAAAAACAAATTTTTAAAATTGAAAAAATCAAGGAACAAGTGAGCAATGCTTCACAATGTTTGTGTTAGATTCAGTATAGAAATAACATTTGTCTGTTGATTATTTCAGGGGACAGTTTCCCTCTAGAGGCGGAGGTCGTGGAGGGGGCAGAGGTGGCGGCAGAGGTGGCCGCGGAGGTGGCGGTTTTCGTGGCAGAGGTGGCCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGTGGCTTTAGGGGTAGAGGAAGATTCTAGATTAGCATTATGTAACATCATAGTTTTACCAATTTTCCATTTGCAATGTTTTGAGAAGCGCTTGCAAGAGTCTTTTGTTTGCACTGTATTTTATTTGGAATTGAACCTCTTAGTACTGAAGCTACTACCTAATTTAATTCTGCTCCAAATTTTAATGTTTTACCAACCACCTCTAATTTTGCAATTTGTTCCTGAATATATACATGGATCAAGGTTGTGGAAGATGAAATTTAGTTTGTCATATTTCTCATACAGCTGAATTTCTGATTGCTGCGCTTTTTGAACAGAATAAGACCAATGTCCATAGGCTTTGAAACTGGTATTTTGTAGTTATGCCATTAGATATTGTACTCAGTCCTTGATGTATTTAGTGTTATCTTTCGGACTGGAGTTAGTATTAGACTCGTCATTTTTTTGAATGAAGGTTTGGTTTCTTATATAAAGGAACTATCATCATATGGTACTTTAAAAAAACCACTTCTTTGTATGAAATTTGTATGCGTTGGACTGACCTTTTGAACTAAAGAAGGACAAGAATTCATGAGCGGGAAAGGCTAAAAGCTTGGAAGCAAGTGGGTGGCTGAAGCCTATAGAGGAATCCTTCTCATCCAAAATCAATTCATAAATTTCCTCTCAATATGTATTGGGAGGAAGCAAAACCATACCATGTACTTGACATTTTTAGGCAGAGATAATAATGGTTGCATGTGTGTTCAATAAAAATAACTACTGCTATGAAATGGAGAGTTTTGTATGCAGAAAATACAGCAGAAAAAGAAGCAACAATATGGTGAGGGAGTGGAGCGTCTCCCCATTTATTTAGAGCTGAGAGAAGCAGCTACTCAGGCTTCCCAACCCCTCAGCACTGTGGCTCTGGCAACTCGGTTAACTCCAAGTGTAAAAGCTCCCATTCGAAGGTCACAATTATGGTTCTTGCACATCTCCTTCACATCTTTGAAGCCCTTTGTCATGTATGTCTTCAGCTCATTGTTTACTTTTTCTTCCTCCCACATGAAACCTTGGATGTTCTGCATTTGTATTGTTTGTTTCAATTGAGTTATATTATCATGTGTGTATCCGTTGTCCCTTTGTCAAAGGAGTTGGTAAATGAATGAACAAAGGGTGGGGGGTGTACCTGAACCCACTCGAAGTAGCTAACTGTAACGCCCCCTGAATTTGCATAAATATCTGGTAGAATAACAACTCCTTTTCTTGCCAATATCTACAGATGACAAAATATAATGAATAGCTTTTGTGATTATCTTAATTTGGTTCGATGTTCGTTTATGGGCTCACCTCATCAGCCTCTGGGTCTGTTGGGTGATTGGCTGCTTCTATTATGAAGTTGGCTCTGATTTCATTAGCATTTTCCTTGTTAATGACGCCTCCAAGGGCTGCTGGTATTAGTATGTCACAATCTTCAACCAGAATAGATCTGGGGTCAATTGGATTTCCTCCTTCAAAACCTTTCACACCTTTGTGTTCTTTTGCATGCTTTAGTAAGCTTGGAATATCTATTCCATTGGTGTTCTTTATTGCACCTGTTACATCACTTATTGCTACAATCTTCCCTCCACTTTCACTTATCAGTCGGGCTGCCCATGACCCCACATTGCCAAAACCCTAACATATCAGTCCATATTTGTAGTTAGCATATAATGGTATATATAATTGTTAGCTTGACTGAGAAATTTTAGCAGCAAGGTAAAGGTGTGCCTGAATGACAAATCTTTGGCCGGATATGCTCTTTCCATACTCATTTAGTAGGGCCTCTGTTGCATACAGCACGCCTCGTCCCGTTGCTGCATCTCTGCCCAGAGATCCACCTAGATCCTAGTATGGGGAAAGTCAATTTTGATTAGTTTTTGTTTTATTAGTAATACATGAAGCGGAGTTGAGCCTTATATAGACTTACAATAGGTTTCCCTGTTACCACTGCTGGTGAGTAGCCATGAAACTTAGAATATTCATCTAGTATCCATGCCATTGTCTATTCAAAGCAACAAACTCAATTATGAAGAAGCAAAGCTGAACCTTGAAGAATTAAACTAGACTTGAAACTATGTGTGATTGTGTATGTGTAGTCAACCTGTGGACCTGTTCCCATATCTGGTGCGGGAACATCAGTGTGGACGCCAATAAGATCATGTATCTTTTGAGTAAAAACTCTTGTAAGACGCTCCAATTCCGATATACTTAATTCTCCAGGATTGCATCCTATCCCTCCCTTGGCTCCACCATAAGGTATATTTGCAACCGCTGTCTTCCATGTCATCAATTGTGCTAAAGCATTTACCTCATCAGGGTCAAC

mRNA sequence

ATGAGACCTCCAAGAGGCGGCGGCGGCTTCAGAGGAGGCCGTGATGGTGGCCGCTTTGGTGGTCGTGGAGGCGGAGGCTTCCGTGATGAGGGTCCTCCATCTGAAGTCGTTGAGGTTTCTACTTTCCTTCATGCGTGTGAGGGAGATGCAGTCACAAAGCTCACAAATGAGAAGATTCCTTTCTTTAATGCTCCTATTTATCTTCAGAACAAGACTCAGATAGGGAAAGTTGATGAAATTTTCGGCCCCATCAATGAATCTTACTTCTCGATCAAAATGATGGAAGGAATTGTCGCAACCTCTTACGCTTCTGGGGATAAATTTTATATTGATCCAGCTAAACTCCTACCACTTGCTAGATTTCTCCCACAACCAAAGGGACAGTTTCCCTCTAGAGGCGGAGGTCGTGGAGGGGGCAGAGGTGGCGGCAGAGGTGGCCGCGGAGGTGGCGGTTTTCGTGGCAGAGGTGGCCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGTGGCTTTAGGGGTAGAGGAAGATTCTAG

Coding sequence (CDS)

ATGAGACCTCCAAGAGGCGGCGGCGGCTTCAGAGGAGGCCGTGATGGTGGCCGCTTTGGTGGTCGTGGAGGCGGAGGCTTCCGTGATGAGGGTCCTCCATCTGAAGTCGTTGAGGTTTCTACTTTCCTTCATGCGTGTGAGGGAGATGCAGTCACAAAGCTCACAAATGAGAAGATTCCTTTCTTTAATGCTCCTATTTATCTTCAGAACAAGACTCAGATAGGGAAAGTTGATGAAATTTTCGGCCCCATCAATGAATCTTACTTCTCGATCAAAATGATGGAAGGAATTGTCGCAACCTCTTACGCTTCTGGGGATAAATTTTATATTGATCCAGCTAAACTCCTACCACTTGCTAGATTTCTCCCACAACCAAAGGGACAGTTTCCCTCTAGAGGCGGAGGTCGTGGAGGGGGCAGAGGTGGCGGCAGAGGTGGCCGCGGAGGTGGCGGTTTTCGTGGCAGAGGTGGCCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGTGGCTTTAGGGGTAGAGGAAGATTCTAG

Protein sequence

MRPPRGGGGFRGGRDGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPPRGGGRGGGFRGRGRF

Homology

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BLAST of CsaV3_4G013280 vs. NCBI nr
Match: XP_004147534.1 (PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis sativus] >XP_008441980.1 PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis melo] >KGN53940.1 H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 4.6e-58
Identity = 133/147 (90.48%), Postives = 133/147 (90.48%), Query Frame = 0


Query: 1   MRPPRGGGGFR-------------XXXXXXXXXXXXXXXFRDEGPPSEVVEVSTFLHACE 60
           MRPPRGGGGFR             XXXXXXXXXXXXXX FRDEGPPSEVVEVSTFLHACE
Sbjct: 1   MRPPRGGGGFRXXXXXXXXXXXXXXXXXXXXXXXXXXXGFRDEGPPSEVVEVSTFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKGQFPSRGG 135
           FYIDPAKLLPLARFLPQPKGQFPSRGG
Sbjct: 121 FYIDPAKLLPLARFLPQPKGQFPSRGG 147

[Close]

BLAST of CsaV3_4G013280 vs. NCBI nr
Match: XP_022950557.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita moschata])

HSP 1 Score: 219.9 bits (559), Expect = 6.9e-54
Identity = 127/146 (86.99%), Postives = 130/146 (89.04%), Query Frame = 0


Query: 1   MRPPRGGGGFR-------------XXXXXXXXXXXXXXXFRDEGPPSEVVEVSTFLHACE 60
           MRPPRGGGGFR             XXXXXXXXXXXXXXX  DEGPPSEVVEVS+FLHACE
Sbjct: 1   MRPPRGGGGFRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGPPSEVVEVSSFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY+SGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKGQFPSRG 134
           FYIDPAKLLPLARFLPQPKGQF +RG
Sbjct: 121 FYIDPAKLLPLARFLPQPKGQFAARG 146

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BLAST of CsaV3_4G013280 vs. NCBI nr
Match: XP_023544656.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita pepo subsp. pepo] >XP_023544657.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219.9 bits (559), Expect = 6.9e-54
Identity = 127/146 (86.99%), Postives = 130/146 (89.04%), Query Frame = 0


Query: 1   MRPPRGGGGFR-------------XXXXXXXXXXXXXXXFRDEGPPSEVVEVSTFLHACE 60
           MRPPRGGGGFR             XXXXXXXXXXXXXXX  DEGPPSEVVEVS+FLHACE
Sbjct: 1   MRPPRGGGGFRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGPPSEVVEVSSFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY+SGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKGQFPSRG 134
           FYIDPAKLLPLARFLPQPKGQF +RG
Sbjct: 121 FYIDPAKLLPLARFLPQPKGQFAARG 146

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BLAST of CsaV3_4G013280 vs. NCBI nr
Match: XP_022978292.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita maxima])

HSP 1 Score: 218.4 bits (555), Expect = 2.0e-53
Identity = 125/146 (85.62%), Postives = 130/146 (89.04%), Query Frame = 0


Query: 1   MRPPRGGGGFR-------------XXXXXXXXXXXXXXXFRDEGPPSEVVEVSTFLHACE 60
           MRPPRGGGGFR             XXXXXXXXXXXXXXX  DEGPP+EVVE+S+FLHACE
Sbjct: 1   MRPPRGGGGFRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGPPAEVVEISSFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY+SGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKGQFPSRG 134
           FYIDPAKLLPLARFLPQPKGQF +RG
Sbjct: 121 FYIDPAKLLPLARFLPQPKGQFAARG 146

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BLAST of CsaV3_4G013280 vs. NCBI nr
Match: XP_022156221.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Momordica charantia])

HSP 1 Score: 216.1 bits (549), Expect = 1.0e-52
Identity = 124/144 (86.11%), Postives = 126/144 (87.50%), Query Frame = 0


Query: 1   MRPPRGGGGFR----------------XXXXXXXXXXXXXXXFRDEGPPSEVVEVSTFLH 60
           MRPPRGGGGFR                XXXXXXXXXXXXXX FRDEGPP+EVVEVSTFLH
Sbjct: 1   MRPPRGGGGFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFRDEGPPAEVVEVSTFLH 60

Query: 61  ACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYAS 120
           ACEGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY S
Sbjct: 61  ACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYTS 120

Query: 121 GDKFYIDPAKLLPLARFLPQPKGQ 129
           GDKFYIDPAKLLPLARFLPQPKGQ
Sbjct: 121 GDKFYIDPAKLLPLARFLPQPKGQ 144

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BLAST of CsaV3_4G013280 vs. TAIR10
Match: AT3G03920.1 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein)

HSP 1 Score: 194.1 bits (492), Expect = 7.4e-50
Identity = 120/156 (76.92%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 1   MRPP-RGGGGFR---------------------XXXXXXXXXXXXXXXFRDEGPPSEVVE 60
           MRPP RGGGGFR                     XXXXXXXXXXXXXXXFRDEGPPSEVVE
Sbjct: 1   MRPPMRGGGGFRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRDEGPPSEVVE 60

Query: 61  VSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIV 120
           V+TF+HACEGDAVTKL+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FSIKMMEGIV
Sbjct: 61  VATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGIV 120

Query: 121 ATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGG 135
           ATSY+ GDKF+IDP KLLPLARFLPQPKGQ  S GG
Sbjct: 121 ATSYSPGDKFFIDPYKLLPLARFLPQPKGQ--STGG 154

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BLAST of CsaV3_4G013280 vs. TAIR10
Match: AT5G18180.1 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein)

HSP 1 Score: 188.3 bits (477), Expect = 4.0e-48
Identity = 110/137 (80.29%), Postives = 116/137 (84.67%), Query Frame = 0


Query: 1   MRPPRGGGGFRXXXXXXXXXXXXXXXFR---------DEGPPSEVVEVSTFLHACEGDAV 60
           MRPPRGGG FR XXXXXXXXXXXXXX           DEGPPSEVVEV+TFLHACEGDAV
Sbjct: 1   MRPPRGGGSFRGXXXXXXXXXXXXXXXXXXXXXGGNYDEGPPSEVVEVATFLHACEGDAV 60

Query: 61  TKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFYID 120
            KL+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FSIKM EGIVATSY+ GDKF+I 
Sbjct: 61  FKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATSYSQGDKFFIS 120

Query: 121 PAKLLPLARFLPQPKGQ 129
           P KLLPL+RFLPQPKGQ
Sbjct: 121 PEKLLPLSRFLPQPKGQ 137

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BLAST of CsaV3_4G013280 vs. Swiss-Prot
Match: sp|Q8VZT0|NLAL1_ARATH (Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At3g03920 PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.3e-48
Identity = 120/156 (76.92%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 1   MRPP-RGGGGFR---------------------XXXXXXXXXXXXXXXFRDEGPPSEVVE 60
           MRPP RGGGGFR                     XXXXXXXXXXXXXXXFRDEGPPSEVVE
Sbjct: 1   MRPPMRGGGGFRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRDEGPPSEVVE 60

Query: 61  VSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIV 120
           V+TF+HACEGDAVTKL+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FSIKMMEGIV
Sbjct: 61  VATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGIV 120

Query: 121 ATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGG 135
           ATSY+ GDKF+IDP KLLPLARFLPQPKGQ  S GG
Sbjct: 121 ATSYSPGDKFFIDPYKLLPLARFLPQPKGQ--STGG 154

[Close]

BLAST of CsaV3_4G013280 vs. Swiss-Prot
Match: sp|Q9FK53|NLAL2_ARATH (H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At5g18180 PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.3e-47
Identity = 110/137 (80.29%), Postives = 116/137 (84.67%), Query Frame = 0


Query: 1   MRPPRGGGGFRXXXXXXXXXXXXXXXFR---------DEGPPSEVVEVSTFLHACEGDAV 60
           MRPPRGGG FR XXXXXXXXXXXXXX           DEGPPSEVVEV+TFLHACEGDAV
Sbjct: 1   MRPPRGGGSFRGXXXXXXXXXXXXXXXXXXXXXGGNYDEGPPSEVVEVATFLHACEGDAV 60

Query: 61  TKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFYID 120
            KL+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FSIKM EGIVATSY+ GDKF+I 
Sbjct: 61  FKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATSYSQGDKFFIS 120

Query: 121 PAKLLPLARFLPQPKGQ 129
           P KLLPL+RFLPQPKGQ
Sbjct: 121 PEKLLPLSRFLPQPKGQ 137

[Close]

BLAST of CsaV3_4G013280 vs. Swiss-Prot
Match: sp|Q6FSB0|GAR1_CANGA (H/ACA ribonucleoprotein complex subunit GAR1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=GAR1 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.1e-33
Identity = 62/103 (60.19%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 30  EGPPSEVVEVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYF 89
           +GPP  V+E+  F+H CEGD V +  N K+P+FNAPIYL+NKTQ+GKVDEI GP+NE YF
Sbjct: 32  QGPPDTVLEMGEFMHPCEGDVVCRSINTKVPYFNAPIYLENKTQVGKVDEILGPLNEVYF 91

Query: 90  SIKMMEGIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSR 133
           +IK  EG+ ATS+  GDKFYI P KLLP+ RF+P+PK   P +
Sbjct: 92  TIKCGEGVQATSFKEGDKFYIAPDKLLPIERFIPKPKVAGPPK 134

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BLAST of CsaV3_4G013280 vs. Swiss-Prot
Match: sp|Q2HH48|GAR1_CHAGB (H/ACA ribonucleoprotein complex subunit GAR1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=GAR1 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.1e-33
Identity = 69/115 (60.00%), Postives = 84/115 (73.04%), Query Frame = 0


Query: 28  RDEGPPSEVVEVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINES 87
           RD GPP+ V+E+  F+HACEG+ V + TN K+P FNAPIYL+NKT +GKVDE+ GPIN+ 
Sbjct: 29  RDMGPPATVLEMGKFIHACEGEMVIESTNPKVPHFNAPIYLENKTAVGKVDEVLGPINQV 88

Query: 88  YFSIKMMEGIVATSYASGDKFYIDPAKLLPLARFLPQPKG--------QFPSRGG 135
           YF+IK  EGI ATS+  GDKFYI   KLLPL RFLP+PK         + PSRGG
Sbjct: 89  YFTIKPSEGIQATSFKYGDKFYIAGEKLLPLERFLPKPKPPPGTVSKVKKPSRGG 143

[Close]

BLAST of CsaV3_4G013280 vs. Swiss-Prot
Match: sp|Q6CJ45|GAR1_KLULA (H/ACA ribonucleoprotein complex subunit GAR1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=GAR1 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.0e-33
Identity = 61/103 (59.22%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 30  EGPPSEVVEVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYF 89
           +GPP  V+E+  FLH CEGD V +  N KIP+FNAPIYL+NKTQ+GKVDEI GP+NE +F
Sbjct: 29  QGPPDSVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFF 88

Query: 90  SIKMMEGIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSR 133
           ++K  +G+ A S++ GDKFYI P KLLP+ RFLP+PK   P +
Sbjct: 89  TVKCSDGVKAESFSEGDKFYIAPDKLLPIERFLPKPKVAGPPK 131

[Close]

BLAST of CsaV3_4G013280 vs. TrEMBL
Match: tr|A0A1S3B5D8|A0A1S3B5D8_CUCME (H/ACA ribonucleoprotein complex subunit OS=Cucumis melo OX=3656 GN=LOC103485980 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.1e-58
Identity = 133/147 (90.48%), Postives = 133/147 (90.48%), Query Frame = 0


Query: 1   MRPPRGGGGFR-------------XXXXXXXXXXXXXXXFRDEGPPSEVVEVSTFLHACE 60
           MRPPRGGGGFR             XXXXXXXXXXXXXX FRDEGPPSEVVEVSTFLHACE
Sbjct: 1   MRPPRGGGGFRXXXXXXXXXXXXXXXXXXXXXXXXXXXGFRDEGPPSEVVEVSTFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKGQFPSRGG 135
           FYIDPAKLLPLARFLPQPKGQFPSRGG
Sbjct: 121 FYIDPAKLLPLARFLPQPKGQFPSRGG 147

[Close]

BLAST of CsaV3_4G013280 vs. TrEMBL
Match: tr|A0A0A0KWF0|A0A0A0KWF0_CUCSA (H/ACA ribonucleoprotein complex subunit OS=Cucumis sativus OX=3659 GN=Csa_4G192120 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.1e-58
Identity = 133/147 (90.48%), Postives = 133/147 (90.48%), Query Frame = 0


Query: 1   MRPPRGGGGFR-------------XXXXXXXXXXXXXXXFRDEGPPSEVVEVSTFLHACE 60
           MRPPRGGGGFR             XXXXXXXXXXXXXX FRDEGPPSEVVEVSTFLHACE
Sbjct: 1   MRPPRGGGGFRXXXXXXXXXXXXXXXXXXXXXXXXXXXGFRDEGPPSEVVEVSTFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKGQFPSRGG 135
           FYIDPAKLLPLARFLPQPKGQFPSRGG
Sbjct: 121 FYIDPAKLLPLARFLPQPKGQFPSRGG 147

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BLAST of CsaV3_4G013280 vs. TrEMBL
Match: tr|A0A2P6RFX2|A0A2P6RFX2_ROSCH (H/ACA ribonucleoprotein complex subunit OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0490211 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 3.3e-52
Identity = 124/143 (86.71%), Postives = 130/143 (90.91%), Query Frame = 0


Query: 1   MRPPRGGGGFR-------XXXXXXXXXXXXXXXFRDEGPPSEVVEVSTFLHACEGDAVTK 60
           MRPPRGGG FR       XXXXXXXXXXXXXXX RDEGPPSEVVEVSTF+HACEGDAVTK
Sbjct: 1   MRPPRGGGSFRXXXXXXXXXXXXXXXXXXXXXXXRDEGPPSEVVEVSTFVHACEGDAVTK 60

Query: 61  LTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFYIDPA 120
           LT+EKIP+FNAPIYLQNKTQIGKVDEIFGPINESYFS+K+MEGIVATSY+ GDKFYIDPA
Sbjct: 61  LTHEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKVMEGIVATSYSQGDKFYIDPA 120

Query: 121 KLLPLARFLPQPKGQFP--SRGG 135
           KLLPLARFLPQPKGQ P  SRGG
Sbjct: 121 KLLPLARFLPQPKGQKPAFSRGG 143

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BLAST of CsaV3_4G013280 vs. TrEMBL
Match: tr|A0A061F3J0|A0A061F3J0_THECC (H/ACA ribonucleoprotein complex subunit OS=Theobroma cacao OX=3641 GN=TCM_026465 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.3e-52
Identity = 121/139 (87.05%), Postives = 127/139 (91.37%), Query Frame = 0


Query: 1   MRPPRGGGGFR-----------XXXXXXXXXXXXXXXFRDEGPPSEVVEVSTFLHACEGD 60
           MRPPRGGGGFR           XXXXXXXXXXXXXXXFRDEGPP+EVVE+STFLHACEGD
Sbjct: 1   MRPPRGGGGFRXXXXXXXXXXXXXXXXXXXXXXXXXXFRDEGPPAEVVEISTFLHACEGD 60

Query: 61  AVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFY 120
           AVTKLTNEKIP+FNAPIYLQNKTQIGKVDEIFGPINESYFSIKM+EGIVATSYA GDKFY
Sbjct: 61  AVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMLEGIVATSYALGDKFY 120

Query: 121 IDPAKLLPLARFLPQPKGQ 129
           IDP+KLLPLA+FLPQPKGQ
Sbjct: 121 IDPSKLLPLAKFLPQPKGQ 139

[Close]

BLAST of CsaV3_4G013280 vs. TrEMBL
Match: tr|A0A200Q796|A0A200Q796_9MAGN (H/ACA ribonucleoprotein complex subunit OS=Macleaya cordata OX=56857 GN=BVC80_8885g2 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.6e-51
Identity = 124/145 (85.52%), Postives = 129/145 (88.97%), Query Frame = 0


Query: 1   MRPPRGGGGFR----------XXXXXXXXXXXXXXXFRDEGPPSEVVEVSTFLHACEGDA 60
           MRPPRGGGGFR          XXXXXXXXXXXXXXX RDEGPPSEVVEVS+FLHACEGDA
Sbjct: 1   MRPPRGGGGFRGRDGGXXXXXXXXXXXXXXXXXXXXXRDEGPPSEVVEVSSFLHACEGDA 60

Query: 61  VTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFYI 120
           VTKLTNEKIP+FNAPIYLQN TQIGKVDEIFGPINESYFS+KMMEGIVATSY++GDKFYI
Sbjct: 61  VTKLTNEKIPYFNAPIYLQNMTQIGKVDEIFGPINESYFSVKMMEGIVATSYSTGDKFYI 120

Query: 121 DPAKLLPLARFLPQPKG-QFPSRGG 135
           DPAKLLPLARFLPQPKG Q   RGG
Sbjct: 121 DPAKLLPLARFLPQPKGSQSAFRGG 145

The following BLAST results are available for this feature:

BLAST of CsaV3_4G013280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147534.1	4.6e-58	90.48	PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cu...	[more]
XP_022950557.1	6.9e-54	86.99	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita mos...	[more]
XP_023544656.1	6.9e-54	86.99	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita pep...	[more]
XP_022978292.1	2.0e-53	85.62	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita max...	[more]
XP_022156221.1	1.0e-52	86.11	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Momordica cha...	[more]

BLAST of CsaV3_4G013280 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03920.1	7.4e-50	76.92	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	[more]
AT5G18180.1	4.0e-48	80.29	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	[more]

BLAST of CsaV3_4G013280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8VZT0\|NLAL1_ARATH	1.3e-48	76.92	Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis...	[more]
sp\|Q9FK53\|NLAL2_ARATH	7.3e-47	80.29	H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana...	[more]
sp\|Q6FSB0\|GAR1_CANGA	2.1e-33	60.19	H/ACA ribonucleoprotein complex subunit GAR1 OS=Candida glabrata (strain ATCC 20...	[more]
sp\|Q2HH48\|GAR1_CHAGB	2.1e-33	60.00	H/ACA ribonucleoprotein complex subunit GAR1 OS=Chaetomium globosum (strain ATCC...	[more]
sp\|Q6CJ45\|GAR1_KLULA	6.0e-33	59.22	H/ACA ribonucleoprotein complex subunit GAR1 OS=Kluyveromyces lactis (strain ATC...	[more]

BLAST of CsaV3_4G013280 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B5D8\|A0A1S3B5D8_CUCME	3.1e-58	90.48	H/ACA ribonucleoprotein complex subunit OS=Cucumis melo OX=3656 GN=LOC103485980 ...	[more]
tr\|A0A0A0KWF0\|A0A0A0KWF0_CUCSA	3.1e-58	90.48	H/ACA ribonucleoprotein complex subunit OS=Cucumis sativus OX=3659 GN=Csa_4G1921...	[more]
tr\|A0A2P6RFX2\|A0A2P6RFX2_ROSCH	3.3e-52	86.71	H/ACA ribonucleoprotein complex subunit OS=Rosa chinensis OX=74649 GN=RchiOBHm_C...	[more]
tr\|A0A061F3J0\|A0A061F3J0_THECC	4.3e-52	87.05	H/ACA ribonucleoprotein complex subunit OS=Theobroma cacao OX=3641 GN=TCM_026465...	[more]
tr\|A0A200Q796\|A0A200Q796_9MAGN	1.6e-51	85.52	H/ACA ribonucleoprotein complex subunit OS=Macleaya cordata OX=56857 GN=BVC80_88...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0031429	box H/ACA snoRNP complex

Vocabulary: **Biological Process**
Term	Definition
GO:0001522	pseudouridine synthesis
GO:0042254	ribosome biogenesis

Vocabulary: **INTERPRO**
Term	Definition
IPR009000	Transl_B-barrel_sf
IPR021154	H/ACA_rnp_Gar1
IPR038664	Gar1/Naf1_Cbf5-bd_sf
IPR007504	H/ACA_rnp_Gar1/Naf1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0031429	box H/ACA snoRNP complex
cellular_component	GO:0019013	viral nucleocapsid
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G013280.1	CsaV3_4G013280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 178..181
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..181
None	No IPR available	PANTHER	PTHR23237:SF6	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 1	coord: 7..179
IPR007504	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	PFAM	PF04410	Gar1	coord: 28..127 e-value: 1.1E-35 score: 122.6
IPR038664	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	GENE3D	G3DSA:2.40.10.230		coord: 32..123 e-value: 7.1E-43 score: 146.4
IPR021154	H/ACA ribonucleoprotein complex, subunit Gar1	PANTHER	PTHR23237	NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1	coord: 7..179
IPR021154	H/ACA ribonucleoprotein complex, subunit Gar1	PRODOM	PD020235		coord: 38..121 e-value: 4.0E-37 score: 386.0
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	SSF50447	Translation proteins	coord: 37..111

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G013280	CSPI04G11250	Wild cucumber (PI 183967)	cpicucB213
CsaV3_4G013280	Cucsa.024070	Cucumber (Gy14) v1	cgycucB530
CsaV3_4G013280	CmaCh03G002430	Cucurbita maxima (Rimu)	cmacucB0792
CsaV3_4G013280	CmaCh07G011670	Cucurbita maxima (Rimu)	cmacucB1017
CsaV3_4G013280	CmoCh03G002560	Cucurbita moschata (Rifu)	cmocucB0774
CsaV3_4G013280	CmoCh07G012150	Cucurbita moschata (Rifu)	cmocucB1000
CsaV3_4G013280	Cp4.1LG10g07090	Cucurbita pepo (Zucchini)	cpecucB0085
CsaV3_4G013280	Cp4.1LG19g01920	Cucurbita pepo (Zucchini)	cpecucB0612
CsaV3_4G013280	CsGy4G010810	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G013280	Carg12608	Silver-seed gourd	carcucB0313
CsaV3_4G013280	Carg19565	Silver-seed gourd	carcucB0662
CsaV3_4G013280	Cla012132	Watermelon (97103) v1	cucwmB356
CsaV3_4G013280	MELO3C008801	Melon (DHL92) v3.5.1	cucmeB328
CsaV3_4G013280	ClCG04G005310	Watermelon (Charleston Gray)	cucwcgB320
CsaV3_4G013280	Lsi01G016660	Bottle gourd (USVL1VR-Ls)	cuclsiB280
CsaV3_4G013280	MELO3C008801.2	Melon (DHL92) v3.6.1	cucmedB321
CsaV3_4G013280	Cla97C04G071870	Watermelon (97103) v2	cucwmbB309

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G013280	Wax gourd	cucwgoB410