Carg19565 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19565
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	H/ACA ribonucleoprotein complex subunit
Location	Cucurbita_argyrosperma_scaffold_104 : 512065 .. 513808 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGACCACCAAGAGGCGGCGGTGGCTTCCGGGGAGGCCGTGACGGTGGTTTCGGTGGTAGAGGAGGCGGCCGTGGCAGGGGAGGTGGCCGCTTTGGTGGTCGTGGCGGCGGAGGTTTTCGTGATGAGGGTCCTCCGTCTGAAGTCGTTGGTTCGTATCTCTCATTACTTCTTCAATTATTCACTGATTTGGATTTTCCTTCATCTTTTTCTTCTTTGCTACTAGGATATTTTCTGTAGGTGTTTAATGAAATAGTTTTAGTTACAACGCGATGTTCCCTTGGACTCCTTTGGACTATTTAGAATGTTACTGGTATTTTCGTTGGTATAATCGGCATAAACAATGGATTTTGCTTTTGAAACTTTCCTTTTTCTTTAGCAATTTAAATTTGAATACACACAATTTATGTCTATTTTTCTCTAGGATTGTTTTGTTACATTTACTCCCTGTTTTCCCTACTTTGTTCTATTTTATTTATCACTACGTTGATTTTTTCGGTTACAGAGGTTTCTTCTTTCCTTCATGCATGTGAGGGAGATGCAGTCACAAAGCTCACAAATGAGAAGATTCCTTTCTTTAATGCCCCTATCTATCTTCAGAATAAGACCCAGATAGGTAAAGTTGATGAGATTTTCGGCCCCATCAATGAATCCGTGAGTCCACCGGCCTTGATTTTGTTAGTTGTTTAGTTTTGGATACAGTTTTTATATATGATAAATCATTGTTTCTTAAACCTGATTGCAGTATTTCTCGATCAAAATGATGGAAGGAATCGTCGCCACCTCATATTCTTCTGGGGATAAATTTTATATTGATCCAGCTAAACTTTTACCTCTCGCTAGATTCCTCCCACAGCCCAAGTACGTAATCCATCTCTCCCCCCACCTCCAATGAGGTCTTTTTTTCAAGTGATTGCTTATGTCCGTATGTATTGAGTGGTTTTAGAAAACGTAGTTTTATGTCTTGACTGCACGACTAACGTTTTTTGTTCGGTAGTAAGGCTTGGATATAAATTCAGATTAACATGGTATTTATGTTTGATTGTAATGAATCTTGAATGAAGATGGGTGGTTAAGTGAAAGATTCTATTATAGTTGAAATTTGGGCATCCAGACTGAGTAAAATCACGTGTGACTGAAAATAGGGTTGCTAAGTTCATGACAGTTTGTTTTATTTTATTTGTTTTAAATTGTGTGTTTAATTCCTAGTTCCTCTATATGATTCCAAATTTTCATAATCCAAACGAACAACATAGCTTCCTATTATGTGGTCTGATGCGTCTATTTCTTATTTCTTCATTGTGCTGCTGTTAGTCTTCAGTGGATTGTGTACATGAGATAAACAATTTAGTTTTGCTTCGACTTTACCACGCTGGATGCGTCTGTGATTTGCCCTTATTGGCTCCTTTTTCTATTCAGTATCCAAATATTGGTAGTCGATCACTATTCATCTGATATGTTTCAAACCGATAGACGGTTTCATAACTTTTTTTAAATTGAAAGAATCAAAGAACTACTAAGCAATGCTTCACAGTTTGTGTTAGATTCTGTATAGAAATAACTCATTATGTCTGTTCATTATTTCAGGGGACAGTTTGCTGCTAGAGGTGGAGGTCGTGGTGGGGGCAGAGGTGGCCGTGGGGCTGGTGGCTTTCGTGGAAGGGGTGGTCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGTGGCTTTAGGGGTAGAGGAAGATACTAA

mRNA sequence

ATGCGACCACCAAGAGGCGGCGGTGGCTTCCGGGGAGGCCGTGACGGTGGTTTCGGTGGTAGAGGAGGCGGCCGTGGCAGGGGAGGTGGCCGCTTTGGTGGTCGTGGCGGCGGAGGTTTTCGTGATGAGGGTCCTCCGTCTGAAGTCGTTGAGGTTTCTTCTTTCCTTCATGCATGTGAGGGAGATGCAGTCACAAAGCTCACAAATGAGAAGATTCCTTTCTTTAATGCCCCTATCTATCTTCAGAATAAGACCCAGATAGGTAAAGTTGATGAGATTTTCGGCCCCATCAATGAATCCTATTTCTCGATCAAAATGATGGAAGGAATCGTCGCCACCTCATATTCTTCTGGGGATAAATTTTATATTGATCCAGCTAAACTTTTACCTCTCGCTAGATTCCTCCCACAGCCCAAGTACTTTGCTGCTAGAGGTGGAGGTCGTGGTGGGGGCAGAGGTGGCCGTGGGGCTGGTGGCTTTCGTGGAAGGGGTGGTCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGTGGCTTTAGGGGTAGAGGAAGATACTAA

Coding sequence (CDS)

ATGCGACCACCAAGAGGCGGCGGTGGCTTCCGGGGAGGCCGTGACGGTGGTTTCGGTGGTAGAGGAGGCGGCCGTGGCAGGGGAGGTGGCCGCTTTGGTGGTCGTGGCGGCGGAGGTTTTCGTGATGAGGGTCCTCCGTCTGAAGTCGTTGAGGTTTCTTCTTTCCTTCATGCATGTGAGGGAGATGCAGTCACAAAGCTCACAAATGAGAAGATTCCTTTCTTTAATGCCCCTATCTATCTTCAGAATAAGACCCAGATAGGTAAAGTTGATGAGATTTTCGGCCCCATCAATGAATCCTATTTCTCGATCAAAATGATGGAAGGAATCGTCGCCACCTCATATTCTTCTGGGGATAAATTTTATATTGATCCAGCTAAACTTTTACCTCTCGCTAGATTCCTCCCACAGCCCAAGTACTTTGCTGCTAGAGGTGGAGGTCGTGGTGGGGGCAGAGGTGGCCGTGGGGCTGGTGGCTTTCGTGGAAGGGGTGGTCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGTGGCTTTAGGGGTAGAGGAAGATACTAA

Protein sequence

MRPPRGGGGFRGGRDGGFGGRGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDKFYIDPAKLLPLARFLPQPKYFAARGGGRGGGRGGRGAGGFRGRGGPRGGRGGPPRGGGRGGGFRGRGRY

Homology

[Close]

BLAST of Carg19565 vs. NCBI nr
Match: XP_022950557.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita moschata])

HSP 1 Score: 223.8 bits (569), Expect = 5.0e-55
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGPPSEVVEVSSFLHACE 60
           MRPPRGGGGFRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGPPSEVVEVSSFLHACE
Sbjct: 1   MRPPRGGGGFRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGPPSEVVEVSSFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120

Query: 121 FYIDPAKLLPLARFLPQPK-YFAARG 146
           FYIDPAKLLPLARFLPQPK  FAARG
Sbjct: 121 FYIDPAKLLPLARFLPQPKGQFAARG 146

[Close]

BLAST of Carg19565 vs. NCBI nr
Match: XP_023544656.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita pepo subsp. pepo] >XP_023544657.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.8 bits (569), Expect = 5.0e-55
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGPPSEVVEVSSFLHACE 60
           MRPPRGGGGFRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGPPSEVVEVSSFLHACE
Sbjct: 1   MRPPRGGGGFRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGPPSEVVEVSSFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120

Query: 121 FYIDPAKLLPLARFLPQPK-YFAARG 146
           FYIDPAKLLPLARFLPQPK  FAARG
Sbjct: 121 FYIDPAKLLPLARFLPQPKGQFAARG 146

[Close]

BLAST of Carg19565 vs. NCBI nr
Match: XP_022978292.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita maxima])

HSP 1 Score: 222.2 bits (565), Expect = 1.4e-54
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGPPSEVVEVSSFLHACE 60
           MRPPRGGGGFRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGPP+EVVE+SSFLHACE
Sbjct: 1   MRPPRGGGGFRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGPPAEVVEISSFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120

Query: 121 FYIDPAKLLPLARFLPQPK-YFAARG 146
           FYIDPAKLLPLARFLPQPK  FAARG
Sbjct: 121 FYIDPAKLLPLARFLPQPKGQFAARG 146

[Close]

BLAST of Carg19565 vs. NCBI nr
Match: XP_004147534.1 (PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis sativus] >XP_008441980.1 PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis melo] >KGN53940.1 H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 1.8e-52
Identity = 136/147 (92.52%), Postives = 139/147 (94.56%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGPPSEVVEVSSFLHACE 60
           MRPPRGGGGFR  XXXXXXXXXXXXXXXXXXXXXXXXX   DEGPPSEVVEVS+FLHACE
Sbjct: 1   MRPPRGGGGFRXXXXXXXXXXXXXXXXXXXXXXXXXXXGFRDEGPPSEVVEVSTFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY+SGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120

Query: 121 FYIDPAKLLPLARFLPQPK-YFAARGG 147
           FYIDPAKLLPLARFLPQPK  F +RGG
Sbjct: 121 FYIDPAKLLPLARFLPQPKGQFPSRGG 147

[Close]

BLAST of Carg19565 vs. NCBI nr
Match: GAY39928.1 (hypothetical protein CUMW_048150 [Citrus unshiu])

HSP 1 Score: 209.5 bits (532), Expect = 9.7e-51
Identity = 132/140 (94.29%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   MRPPRGGGGFRGG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGPPSEVVEVSSFLHAC 60
           MRPPRGGGGFRGG XXXXXXXXXXXXXXXXXXXXXXXXXX  DEGPP+EVVE+SSFLHAC
Sbjct: 1   MRPPRGGGGFRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXFRDEGPPAEVVEISSFLHAC 60

Query: 61  EGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGD 120
           EGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFS+KMMEGIVATSYS GD
Sbjct: 61  EGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGD 120

Query: 121 KFYIDPAKLLPLARFLPQPK 140
           KFYIDP+KLLPLARFLPQPK
Sbjct: 121 KFYIDPSKLLPLARFLPQPK 140

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BLAST of Carg19565 vs. TAIR10
Match: AT3G03920.1 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein)

HSP 1 Score: 184.5 bits (467), Expect = 6.1e-47
Identity = 125/148 (84.46%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 1   MRPP-RGGGGFRG--------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGPPSEVVE 60
           MRPP RGGGGFRG         XXXXXXXXXXXXXXXXXXXXXXXXXX  DEGPPSEVVE
Sbjct: 1   MRPPMRGGGGFRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRDEGPPSEVVE 60

Query: 61  VSSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIV 120
           V++F+HACEGDAVTKL+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FSIKMMEGIV
Sbjct: 61  VATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGIV 120

Query: 121 ATSYSSGDKFYIDPAKLLPLARFLPQPK 140
           ATSYS GDKF+IDP KLLPLARFLPQPK
Sbjct: 121 ATSYSPGDKFFIDPYKLLPLARFLPQPK 148

[Close]

BLAST of Carg19565 vs. TAIR10
Match: AT5G18180.1 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein)

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-46
Identity = 116/139 (83.45%), Postives = 122/139 (87.77%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGPPSEVVEVSSFLHACE 60
           MRPPRGGG FRG    XXXXXXXXXXXXXXXXXXXXX    DEGPPSEVVEV++FLHACE
Sbjct: 1   MRPPRGGGSFRG----XXXXXXXXXXXXXXXXXXXXXGGNYDEGPPSEVVEVATFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120
           GDAV KL+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FSIKM EGIVATSYS GDK
Sbjct: 61  GDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATSYSQGDK 120

Query: 121 FYIDPAKLLPLARFLPQPK 140
           F+I P KLLPL+RFLPQPK
Sbjct: 121 FFISPEKLLPLSRFLPQPK 135

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BLAST of Carg19565 vs. Swiss-Prot
Match: sp|Q8VZT0|NLAL1_ARATH (Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At3g03920 PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-45
Identity = 125/148 (84.46%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 1   MRPP-RGGGGFRG--------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGPPSEVVE 60
           MRPP RGGGGFRG         XXXXXXXXXXXXXXXXXXXXXXXXXX  DEGPPSEVVE
Sbjct: 1   MRPPMRGGGGFRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRDEGPPSEVVE 60

Query: 61  VSSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIV 120
           V++F+HACEGDAVTKL+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FSIKMMEGIV
Sbjct: 61  VATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGIV 120

Query: 121 ATSYSSGDKFYIDPAKLLPLARFLPQPK 140
           ATSYS GDKF+IDP KLLPLARFLPQPK
Sbjct: 121 ATSYSPGDKFFIDPYKLLPLARFLPQPK 148

[Close]

BLAST of Carg19565 vs. Swiss-Prot
Match: sp|Q9FK53|NLAL2_ARATH (H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At5g18180 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.4e-45
Identity = 116/139 (83.45%), Postives = 122/139 (87.77%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGPPSEVVEVSSFLHACE 60
           MRPPRGGG FRG    XXXXXXXXXXXXXXXXXXXXX    DEGPPSEVVEV++FLHACE
Sbjct: 1   MRPPRGGGSFRG----XXXXXXXXXXXXXXXXXXXXXGGNYDEGPPSEVVEVATFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120
           GDAV KL+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FSIKM EGIVATSYS GDK
Sbjct: 61  GDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATSYSQGDK 120

Query: 121 FYIDPAKLLPLARFLPQPK 140
           F+I P KLLPL+RFLPQPK
Sbjct: 121 FFISPEKLLPLSRFLPQPK 135

[Close]

BLAST of Carg19565 vs. Swiss-Prot
Match: sp|Q6FSB0|GAR1_CANGA (H/ACA ribonucleoprotein complex subunit GAR1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=GAR1 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.8e-33
Identity = 61/97 (62.89%), Postives = 77/97 (79.38%), Query Frame = 0


Query: 43  EGPPSEVVEVSSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYF 102
           +GPP  V+E+  F+H CEGD V +  N K+P+FNAPIYL+NKTQ+GKVDEI GP+NE YF
Sbjct: 32  QGPPDTVLEMGEFMHPCEGDVVCRSINTKVPYFNAPIYLENKTQVGKVDEILGPLNEVYF 91

Query: 103 SIKMMEGIVATSYSSGDKFYIDPAKLLPLARFLPQPK 140
           +IK  EG+ ATS+  GDKFYI P KLLP+ RF+P+PK
Sbjct: 92  TIKCGEGVQATSFKEGDKFYIAPDKLLPIERFIPKPK 128

[Close]

BLAST of Carg19565 vs. Swiss-Prot
Match: sp|Q6CJ45|GAR1_KLULA (H/ACA ribonucleoprotein complex subunit GAR1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=GAR1 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.8e-33
Identity = 61/97 (62.89%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 43  EGPPSEVVEVSSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYF 102
           +GPP  V+E+ +FLH CEGD V +  N KIP+FNAPIYL+NKTQ+GKVDEI GP+NE +F
Sbjct: 29  QGPPDSVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFF 88

Query: 103 SIKMMEGIVATSYSSGDKFYIDPAKLLPLARFLPQPK 140
           ++K  +G+ A S+S GDKFYI P KLLP+ RFLP+PK
Sbjct: 89  TVKCSDGVKAESFSEGDKFYIAPDKLLPIERFLPKPK 125

[Close]

BLAST of Carg19565 vs. Swiss-Prot
Match: sp|Q1E6M1|GAR1_COCIM (H/ACA ribonucleoprotein complex subunit GAR1 OS=Coccidioides immitis (strain RS) OX=246410 GN=GAR1 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 8.1e-33
Identity = 63/96 (65.62%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 44  GPPSEVVEVSSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFS 103
           GPP+ V+E+ SF+HACEG+ V +  N KIP+FNAPIYL+NKT +GKVDE+ GPIN+ YF+
Sbjct: 35  GPPTTVLEMGSFMHACEGEMVCESINPKIPYFNAPIYLENKTPVGKVDEVLGPINQVYFT 94

Query: 104 IKMMEGIVATSYSSGDKFYIDPAKLLPLARFLPQPK 140
           IK  EGIVATS+  GDKFYI   KLLPL +FLP+PK
Sbjct: 95  IKPQEGIVATSFKPGDKFYIGGDKLLPLEKFLPKPK 130

[Close]

BLAST of Carg19565 vs. TrEMBL
Match: tr|A0A1S3B5D8|A0A1S3B5D8_CUCME (H/ACA ribonucleoprotein complex subunit OS=Cucumis melo OX=3656 GN=LOC103485980 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.2e-52
Identity = 136/147 (92.52%), Postives = 139/147 (94.56%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGPPSEVVEVSSFLHACE 60
           MRPPRGGGGFR  XXXXXXXXXXXXXXXXXXXXXXXXX   DEGPPSEVVEVS+FLHACE
Sbjct: 1   MRPPRGGGGFRXXXXXXXXXXXXXXXXXXXXXXXXXXXGFRDEGPPSEVVEVSTFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY+SGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120

Query: 121 FYIDPAKLLPLARFLPQPK-YFAARGG 147
           FYIDPAKLLPLARFLPQPK  F +RGG
Sbjct: 121 FYIDPAKLLPLARFLPQPKGQFPSRGG 147

[Close]

BLAST of Carg19565 vs. TrEMBL
Match: tr|A0A0A0KWF0|A0A0A0KWF0_CUCSA (H/ACA ribonucleoprotein complex subunit OS=Cucumis sativus OX=3659 GN=Csa_4G192120 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.2e-52
Identity = 136/147 (92.52%), Postives = 139/147 (94.56%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGPPSEVVEVSSFLHACE 60
           MRPPRGGGGFR  XXXXXXXXXXXXXXXXXXXXXXXXX   DEGPPSEVVEVS+FLHACE
Sbjct: 1   MRPPRGGGGFRXXXXXXXXXXXXXXXXXXXXXXXXXXXGFRDEGPPSEVVEVSTFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY+SGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120

Query: 121 FYIDPAKLLPLARFLPQPK-YFAARGG 147
           FYIDPAKLLPLARFLPQPK  F +RGG
Sbjct: 121 FYIDPAKLLPLARFLPQPKGQFPSRGG 147

[Close]

BLAST of Carg19565 vs. TrEMBL
Match: tr|A0A2H5NIC6|A0A2H5NIC6_CITUN (H/ACA ribonucleoprotein complex subunit OS=Citrus unshiu OX=55188 GN=CUMW_048140 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 6.4e-51
Identity = 132/140 (94.29%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   MRPPRGGGGFRGG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGPPSEVVEVSSFLHAC 60
           MRPPRGGGGFRGG XXXXXXXXXXXXXXXXXXXXXXXXXX  DEGPP+EVVE+SSFLHAC
Sbjct: 1   MRPPRGGGGFRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXFRDEGPPAEVVEISSFLHAC 60

Query: 61  EGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGD 120
           EGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFS+KMMEGIVATSYS GD
Sbjct: 61  EGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGD 120

Query: 121 KFYIDPAKLLPLARFLPQPK 140
           KFYIDP+KLLPLARFLPQPK
Sbjct: 121 KFYIDPSKLLPLARFLPQPK 140

[Close]

BLAST of Carg19565 vs. TrEMBL
Match: tr|A0A2H5NID5|A0A2H5NID5_CITUN (H/ACA ribonucleoprotein complex subunit OS=Citrus unshiu OX=55188 GN=CUMW_048150 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 6.4e-51
Identity = 132/140 (94.29%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   MRPPRGGGGFRGG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGPPSEVVEVSSFLHAC 60
           MRPPRGGGGFRGG XXXXXXXXXXXXXXXXXXXXXXXXXX  DEGPP+EVVE+SSFLHAC
Sbjct: 1   MRPPRGGGGFRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXFRDEGPPAEVVEISSFLHAC 60

Query: 61  EGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGD 120
           EGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFS+KMMEGIVATSYS GD
Sbjct: 61  EGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGD 120

Query: 121 KFYIDPAKLLPLARFLPQPK 140
           KFYIDP+KLLPLARFLPQPK
Sbjct: 121 KFYIDPSKLLPLARFLPQPK 140

[Close]

BLAST of Carg19565 vs. TrEMBL
Match: tr|A0A2H5NIM5|A0A2H5NIM5_CITUN (H/ACA ribonucleoprotein complex subunit OS=Citrus unshiu OX=55188 GN=CUMW_048150 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 6.4e-51
Identity = 132/140 (94.29%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   MRPPRGGGGFRGG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGPPSEVVEVSSFLHAC 60
           MRPPRGGGGFRGG XXXXXXXXXXXXXXXXXXXXXXXXXX  DEGPP+EVVE+SSFLHAC
Sbjct: 1   MRPPRGGGGFRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXFRDEGPPAEVVEISSFLHAC 60

Query: 61  EGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGD 120
           EGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFS+KMMEGIVATSYS GD
Sbjct: 61  EGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGD 120

Query: 121 KFYIDPAKLLPLARFLPQPK 140
           KFYIDP+KLLPLARFLPQPK
Sbjct: 121 KFYIDPSKLLPLARFLPQPK 140

The following BLAST results are available for this feature:

BLAST of Carg19565 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022950557.1	5.0e-55	98.63	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita mos...	[more]
XP_023544656.1	5.0e-55	98.63	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita pep...	[more]
XP_022978292.1	1.4e-54	97.26	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita max...	[more]
XP_004147534.1	1.8e-52	92.52	PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cu...	[more]
GAY39928.1	9.7e-51	94.29	hypothetical protein CUMW_048150 [Citrus unshiu]	[more]

BLAST of Carg19565 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03920.1	6.1e-47	84.46	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	[more]
AT5G18180.1	1.4e-46	83.45	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	[more]

BLAST of Carg19565 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8VZT0\|NLAL1_ARATH	1.1e-45	84.46	Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis...	[more]
sp\|Q9FK53\|NLAL2_ARATH	2.4e-45	83.45	H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana...	[more]
sp\|Q6FSB0\|GAR1_CANGA	2.8e-33	62.89	H/ACA ribonucleoprotein complex subunit GAR1 OS=Candida glabrata (strain ATCC 20...	[more]
sp\|Q6CJ45\|GAR1_KLULA	4.8e-33	62.89	H/ACA ribonucleoprotein complex subunit GAR1 OS=Kluyveromyces lactis (strain ATC...	[more]
sp\|Q1E6M1\|GAR1_COCIM	8.1e-33	65.63	H/ACA ribonucleoprotein complex subunit GAR1 OS=Coccidioides immitis (strain RS)...	[more]

BLAST of Carg19565 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B5D8\|A0A1S3B5D8_CUCME	1.2e-52	92.52	H/ACA ribonucleoprotein complex subunit OS=Cucumis melo OX=3656 GN=LOC103485980 ...	[more]
tr\|A0A0A0KWF0\|A0A0A0KWF0_CUCSA	1.2e-52	92.52	H/ACA ribonucleoprotein complex subunit OS=Cucumis sativus OX=3659 GN=Csa_4G1921...	[more]
tr\|A0A2H5NIC6\|A0A2H5NIC6_CITUN	6.4e-51	94.29	H/ACA ribonucleoprotein complex subunit OS=Citrus unshiu OX=55188 GN=CUMW_048140...	[more]
tr\|A0A2H5NID5\|A0A2H5NID5_CITUN	6.4e-51	94.29	H/ACA ribonucleoprotein complex subunit OS=Citrus unshiu OX=55188 GN=CUMW_048150...	[more]
tr\|A0A2H5NIM5\|A0A2H5NIM5_CITUN	6.4e-51	94.29	H/ACA ribonucleoprotein complex subunit OS=Citrus unshiu OX=55188 GN=CUMW_048150...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0031429	box H/ACA snoRNP complex

Vocabulary: **Biological Process**
Term	Definition
GO:0001522	pseudouridine synthesis
GO:0042254	ribosome biogenesis

Vocabulary: **INTERPRO**
Term	Definition
IPR009000	Transl_B-barrel_sf
IPR021154	H/ACA_rnp_Gar1
IPR007504	H/ACA_rnp_Gar1/Naf1
IPR038664	Gar1/Naf1_Cbf5-bd_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0031429	box H/ACA snoRNP complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19565-RA	Carg19565-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038664	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	GENE3D	G3DSA:2.40.10.230		coord: 45..136 e-value: 1.5E-42 score: 145.3
IPR007504	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	PFAM	PF04410	Gar1	coord: 41..135 e-value: 2.4E-35 score: 121.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..189
None	No IPR available	PANTHER	PTHR23237:SF6	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 1	coord: 6..187
IPR021154	H/ACA ribonucleoprotein complex, subunit Gar1	PANTHER	PTHR23237	NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1	coord: 6..187
IPR021154	H/ACA ribonucleoprotein complex, subunit Gar1	PRODOM	PD020235		coord: 51..134 e-value: 4.0E-37 score: 386.0
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	SSF50447	Translation proteins	coord: 50..124

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19565	Cla012132	Watermelon (97103) v1	carwmB0625
Carg19565	Csa4G192120	Cucumber (Chinese Long) v2	carcuB0651
Carg19565	MELO3C008801	Melon (DHL92) v3.5.1	carmeB0627
Carg19565	ClCG04G005310	Watermelon (Charleston Gray)	carwcgB0608
Carg19565	CSPI04G11250	Wild cucumber (PI 183967)	carcpiB0661
Carg19565	Cucsa.024070	Cucumber (Gy14) v1	carcgyB0704
Carg19565	CmaCh07G011670	Cucurbita maxima (Rimu)	carcmaB0888
Carg19565	CmaCh03G002430	Cucurbita maxima (Rimu)	carcmaB0887
Carg19565	CmoCh07G012150	Cucurbita moschata (Rifu)	carcmoB0864
Carg19565	CmoCh03G002560	Cucurbita moschata (Rifu)	carcmoB0862
Carg19565	Lsi01G016660	Bottle gourd (USVL1VR-Ls)	carlsiB571
Carg19565	Cp4.1LG10g07090	Cucurbita pepo (Zucchini)	carcpeB0891
Carg19565	Cp4.1LG19g01920	Cucurbita pepo (Zucchini)	carcpeB0893
Carg19565	CsGy4G010810	Cucumber (Gy14) v2	carcgybB0627
Carg19565	MELO3C008801.2	Melon (DHL92) v3.6.1	carmedB0635
Carg19565	CsaV3_4G013280	Cucumber (Chinese Long) v3	carcucB0662
Carg19565	Cla97C04G071870	Watermelon (97103) v2	carwmbB0653

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19565	Carg12608	Silver-seed gourd	carcarB319

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19565	Wax gourd	carwgoB0747