Cla012132 (gene) Watermelon (97103) v1

Overview
NameCla012132
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionH/ACA ribonucleoprotein complex subunit 1-like protein 1 (AHRD V1 *-*- B6TYV7_MAIZE); contains Interpro domain(s) IPR007504 Gar1 protein RNA-binding region
LocationChr4 : 15782022 .. 15783890 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGACCTCCAAGGGGCGGCGGTGGCTTCAGGGGAGGCCGTGACGGTGGTTTTGGTGGTAGGGGAGGTGGCCGAGGCGGCGGCGGCAGGGGAGGTGGCCGCTTTGGTGGTCGTGGCGGCGGAGGCTTCCGTGATGAGGGTCCTCCATCTGAAGTCGTTGGTTCGTATCTCCCATTACTTCTTAAATCATTCATTGCTTTGAGCTTTCCATCTTTCGCTTCCTTGTTACCAGTATGAAAAGTTCCATGAAATAGTGGACAATGCAATGTTCACTTGGGCTCCTTAAGACTAATTATATTTAGATGTTATTGGTATTTGCGTTTATAGAATCGGAATAAACGATGGATTCTGTTTTTGAGCTTTCCTTTTGTCTCTAGCAGTTTGAACTTTGAAGTTTCAGAAGTCTTAAGAATGAATCTAACAAGTTTTGTCAATTTTTTTTTCTCTAAGATAGTTAATGAATCGTACAAGTTCAACTGTATTCATCACTAAAAGGATTTTTTTTCGTGTTACAGAGGTTTCTACTTTCCTTCATGCATGTGAGGGAGATGCAGTCACAAAGCTCACAAATGAGAAAATCCCTTTCTTTAATGCCCCTATTTATCTTCAGAATAAGACTCAGATAGGGAAAGTTGATGAAATTTTCGGCCCCATCAATGAGTCCGTGAGTCCACTGGCCTTGATTTTGTTAGTTGTTTAGTTTTGCATATAGTTTTGGTATATGATAAATCATTGTTTTTGTTAACCCGATTGCAGTATTTCTCTATCAAAATGATGGAAGGAATTGTCGCCACATCGTATGCTTCTGGGGATAAATTTTATATTGATCCAGCTAAACTTTTACCTCTTGCTAGATTCCTCCCACAACCAAAGTACGTAATCCATCTCTTTCCTTTCCTCATCTCTAACGAGGTCTAGAATTTGAGTTGGTTCATCTACATGTTTCTTAGCATCCTTTTTCAAGTTATTGCATATGTCCGTTTGAATTGAGAGGTTTGATAATGGCTTTTGTGGTGTGCCCGTTGCATGTAGTTTTAGTTTACTGTTCACGAGTAAGGTTTGGATAGAATTTCAGGTTGGCATGTTCTGTATTTTTCTTTGTTTTTATTGAGTCTTGAACGGAGGTGGGGTAATGTGTGAAAGATTCGATTGTAGTTGAAACTTTGGCCTCCTAATTTAGTAGAATCACAAGATACTGAAAATAGGGGTGCTATCCTGAATAGACATTTATCAGTTTGTTTTTATTTTTATTTTTATTCTTTATTGAGTGTTTCGGTAGTAGCTAGATTGTCTATATGGTTCCAAATTTTCATAATCTAAACTAACAATGTAGGTTCATATTATGAGGTCTAATGTGACTGATGAAAAAAATTCAAGAACCTATCTTTTGTGCTTCTACTTCTTTTTGCTTTATTCAGCCGATGTTAGTCTTCAGTGACCTGACCCTATTGTGTACTTGAGATAAACAATTTAGTTTACTGTGAAACTCTGGCTTCTGTGTTTGGCACTTATCATGTCTTCTTTTTTCTGTTCAGTATCCTAATATTGCTTGTGGATCACGATTCATATTATTTTTTTCCTGTTAGAAGGTTTTAGGACTTATTTTTTAAGTGGAAAGAATCAAAGGACTATTGAGCAATGCTGCACAATGTTTGTGTTAGATTCAGAACAGAAATAACTTTTATGTCTGTTCATTGTTTCAGGGGACAGTTTCCTTCTAGAGGCGGAGGTCGTGGAGGGGGCAGAGGTGGCGGCAGAGGTGGCCGTGGGGGTGGTGGCTTTCGTGGAAGGGGTGGCCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGCTTTAGGGGTAGAGGAAGATTCTAG

mRNA sequence

ATGCGACCTCCAAGGGGCGGCGGTGGCTTCAGGGGAGGCCGTGACGGTGGTTTTGGTGGTAGGGGAGGTGGCCGAGGCGGCGGCGGCAGGGGAGGTGGCCGCTTTGGTGGTCGTGGCGGCGGAGGCTTCCGTGATGAGGGTCCTCCATCTGAAGTCGTTGAGGTTTCTACTTTCCTTCATGCATGTGAGGGAGATGCAGTCACAAAGCTCACAAATGAGAAAATCCCTTTCTTTAATGCCCCTATTTATCTTCAGAATAAGACTCAGATAGGGAAAGTTGATGAAATTTTCGGCCCCATCAATGAGTCCTATTTCTCTATCAAAATGATGGAAGGAATTGTCGCCACATCGTATGCTTCTGGGGATAAATTTTATATTGATCCAGCTAAACTTTTACCTCTTGCTAGATTCCTCCCACAACCAAAGGGACAGTTTCCTTCTAGAGGCGGAGGTCGTGGAGGGGGCAGAGGTGGCGGCAGAGGTGGCCGTGGGGGTGGTGGCTTTCGTGGAAGGGGTGGCCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGCTTTAGGGGTAGAGGAAGATTCTAG

Coding sequence (CDS)

ATGCGACCTCCAAGGGGCGGCGGTGGCTTCAGGGGAGGCCGTGACGGTGGTTTTGGTGGTAGGGGAGGTGGCCGAGGCGGCGGCGGCAGGGGAGGTGGCCGCTTTGGTGGTCGTGGCGGCGGAGGCTTCCGTGATGAGGGTCCTCCATCTGAAGTCGTTGAGGTTTCTACTTTCCTTCATGCATGTGAGGGAGATGCAGTCACAAAGCTCACAAATGAGAAAATCCCTTTCTTTAATGCCCCTATTTATCTTCAGAATAAGACTCAGATAGGGAAAGTTGATGAAATTTTCGGCCCCATCAATGAGTCCTATTTCTCTATCAAAATGATGGAAGGAATTGTCGCCACATCGTATGCTTCTGGGGATAAATTTTATATTGATCCAGCTAAACTTTTACCTCTTGCTAGATTCCTCCCACAACCAAAGGGACAGTTTCCTTCTAGAGGCGGAGGTCGTGGAGGGGGCAGAGGTGGCGGCAGAGGTGGCCGTGGGGGTGGTGGCTTTCGTGGAAGGGGTGGCCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGCTTTAGGGGTAGAGGAAGATTCTAG

Protein sequence

MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPPRGGGRGGFRGRGRF
Homology
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BLAST of Cla012132 vs. Swiss-Prot
Match: NLAL1_ARATH (Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana GN=At3g03920 PE=2 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.1e-82
Identity = 162/203 (79.80%), Postives = 166/203 (81.77%), Query Frame = 1 

Query: 1   MRPP-RGGGGFRG--GRDGGFGGRGGGRGGG-GRGGGRFGGRGG--GGFRDEGPPSEVVE 60
           MRPP RGGGGFRG  GRDGG GGR GG GG  G GGGRFGG GG  GGFRDEGPPSEVVE
Sbjct: 1   MRPPMRGGGGFRGRGGRDGGGGGRFGGGGGRFGGGGGRFGGGGGRFGGFRDEGPPSEVVE 60

Query: 61  VSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIV 120
           V+TF+HACEGDAVTKL+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FSIKMMEGIV
Sbjct: 61  VATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGIV 120

Query: 121 ATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRG-GRGGGGFRGRGG 180
           ATSY+ GDKF+IDP KLLPLARFLPQPKGQ     GG G GRG  RG GRGG   RGRG 
Sbjct: 121 ATSYSPGDKFFIDPYKLLPLARFLPQPKGQSTGGRGGAGRGRGDSRGRGRGGSFSRGRGA 180

Query: 181 PRGGRGGPPRGGGRGGFRGRGRF 197
           PRGGR  PPRGG RG FRGRGRF
Sbjct: 181 PRGGRF-PPRGGSRGSFRGRGRF 202

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BLAST of Cla012132 vs. Swiss-Prot
Match: GAR1_XENTR (H/ACA ribonucleoprotein complex subunit 1 OS=Xenopus tropicalis GN=gar1 PE=2 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 7.2e-61
Identity = 134/203 (66.01%), Postives = 148/203 (72.91%), Query Frame = 1 

Query: 5   RGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFG-GRGGG--GFR----DEGPPSEVVEVST 64
           RGGGG RGG  GGFGGRGGGRGG G+GGGR G GRGGG  GF     D+GPP  VVEV  
Sbjct: 11  RGGGGGRGG--GGFGGRGGGRGGYGQGGGRGGFGRGGGRGGFNRGGYDQGPPESVVEVGE 70

Query: 65  FLHACEGDAVTK-LTNE-KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVA 124
           F+H CE D V K +T E ++P+FNAPIYL+NK QIGKVDEIFG + + YFSIK+ E + A
Sbjct: 71  FMHPCEDDVVCKCITQENRVPYFNAPIYLENKEQIGKVDEIFGQLRDFYFSIKLSENMKA 130

Query: 125 TSYASGDKFYIDPAKLLPLARFLPQPKGQ-FPSRGGGRGGGRGGGR---GGR-GGGGFR- 184
           +S+    KFYIDPAKLLPL RFLP+P G+  P RGGGRGGGRGGGR   GGR GGGGFR 
Sbjct: 131 SSFKKLQKFYIDPAKLLPLQRFLPRPPGEKGPPRGGGRGGGRGGGRGRGGGRGGGGGFRG 190

Query: 185 GRGGPRGGRGGPPRGGGRGGFRG 193
           GRGG  GG GG  RG   GGFRG
Sbjct: 191 GRGGGFGG-GGGFRGSRGGGFRG 210


HSP 2 Score: 63.5 bits (153), Expect = 2.9e-09
Identity = 33/50 (66.00%), Postives = 31/50 (62.00%), Query Frame = 1 

Query: 151 GRGGGRGGGRGGRGGGGFRGRGGPR------GGRGGPPRGGGRGGFRGRG 195
           GRGG   GG GGRGGGGF GRGG R      GGRGG  RGGGRGGF   G
Sbjct: 5   GRGGFNRGGGGGRGGGGFGGRGGGRGGYGQGGGRGGFGRGGGRGGFNRGG 54


HSP 3 Score: 54.3 bits (129), Expect = 1.7e-06
Identity = 28/39 (71.79%), Postives = 26/39 (66.67%), Query Frame = 1 

Query: 6   GGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFR 45
           GGGGFRGGR GGFGG GG R  G RGGG  GGRG  G R
Sbjct: 182 GGGGFRGGRGGGFGGGGGFR--GSRGGGFRGGRGFRGGR 218


HSP 4 Score: 48.9 bits (115), Expect = 7.3e-05
Identity = 28/45 (62.22%), Postives = 26/45 (57.78%), Query Frame = 1 

Query: 5   RGGGGFRGGRDGGFGGRGGGRGGGG-----RGGGRFGGRGGGGFR 45
           RG GG RGG  G  GGRGGG GGGG     RGGG  GGRG  G R
Sbjct: 174 RGRGGGRGGGGGFRGGRGGGFGGGGGFRGSRGGGFRGGRGFRGGR 218

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BLAST of Cla012132 vs. Swiss-Prot
Match: GAR1_CHAGB (H/ACA ribonucleoprotein complex subunit 1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=GAR1 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.3e-58
Identity = 124/210 (59.05%), Postives = 136/210 (64.76%), Query Frame = 1 

Query: 18  FGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACEGDAVTKLTNEKIPF 77
           F G   GRGGGG GGGR GGRGG   RD GPP+ V+E+  F+HACEG+ V + TN K+P 
Sbjct: 3   FRGAPRGRGGGGFGGGRGGGRGGFQQRDMGPPATVLEMGKFIHACEGEMVIESTNPKVPH 62

Query: 78  FNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFYIDPAKLLPLARF 137
           FNAPIYL+NKT +GKVDE+ GPIN+ YF+IK  EGI ATS+  GDKFYI   KLLPL RF
Sbjct: 63  FNAPIYLENKTAVGKVDEVLGPINQVYFTIKPSEGIQATSFKYGDKFYIAGEKLLPLERF 122

Query: 138 LPQPK-------------------------GQFPSRGGGRGGGRGGGRGGRGGGGF---- 197
           LP+PK                         G   SRGGGRGGGRGG  G RGGGGF    
Sbjct: 123 LPKPKPPPGTVSKVKKPSRGGAARGGRGGPGGGFSRGGGRGGGRGGFGGSRGGGGFGGGF 182


HSP 2 Score: 52.8 bits (125), Expect = 5.1e-06
Identity = 30/49 (61.22%), Postives = 28/49 (57.14%), Query Frame = 1 

Query: 7   GGGFR--GGRDGGFGGRGGGRGGGGRGGGRFGGRGG------GGFRDEG 48
           GGGF   GGR GG GG GG RGGGG GGG  GGRGG      GGF   G
Sbjct: 153 GGGFSRGGGRGGGRGGFGGSRGGGGFGGGFGGGRGGAPRGGRGGFSRGG 201


HSP 3 Score: 51.2 bits (121), Expect = 1.5e-05
Identity = 26/36 (72.22%), Postives = 24/36 (66.67%), Query Frame = 1 

Query: 5   RGGGGFRGGRDGGFGGRG-GGRGGGGRGGGRFGGRG 40
           RGGGGF GG  GG GG   GGRGG  RGGGR GGRG
Sbjct: 173 RGGGGFGGGFGGGRGGAPRGGRGGFSRGGGRGGGRG 208


HSP 4 Score: 47.0 bits (110), Expect = 2.8e-04
Identity = 29/47 (61.70%), Postives = 29/47 (61.70%), Query Frame = 1 

Query: 1   MRPPRGGGGFRGGRDGGFGGRGGG-RGGGGRGGGR--FGG-RGGGGF 44
           ++ P  GG  RGGR    GG GGG   GGGRGGGR  FGG RGGGGF
Sbjct: 136 VKKPSRGGAARGGR----GGPGGGFSRGGGRGGGRGGFGGSRGGGGF 178


HSP 5 Score: 45.8 bits (107), Expect = 6.2e-04
Identity = 28/52 (53.85%), Postives = 29/52 (55.77%), Query Frame = 1 

Query: 1   MRPPRGGGGFRGGR--------DGGFGGRGGGRG--GGGRGGGRFGGRGGGG 43
           ++ P  GG  RGGR         G  GGRGGGRG  GG RGGG FGG  GGG
Sbjct: 136 VKKPSRGGAARGGRGGPGGGFSRG--GGRGGGRGGFGGSRGGGGFGGGFGGG 185

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BLAST of Cla012132 vs. Swiss-Prot
Match: GAR1_HUMAN (H/ACA ribonucleoprotein complex subunit 1 OS=Homo sapiens GN=GAR1 PE=1 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 4.8e-57
Identity = 124/208 (59.62%), Postives = 139/208 (66.83%), Query Frame = 1 

Query: 5   RGGGG-----------FRGGRDGGFGG--RGGGRGGGGRGGGRFGGRGGGGFRDEGPPSE 64
           RGGGG           FRGG  GG GG  RGGGRGG GRGGGR G   G   +D+GPP  
Sbjct: 13  RGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKG---QDQGPPER 72

Query: 65  VVEVSTFLHACEGDAVTKLTNE--KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKM 124
           VV +  FLH CE D V K T +  K+P+FNAP+YL+NK QIGKVDEIFG + + YFS+K+
Sbjct: 73  VVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRDFYFSVKL 132

Query: 125 MEGIVATSYASGDKFYIDPAKLLPLARFLPQPKGQ-FPSRGGGRGGGRGGGRGGRGGGGF 184
            E + A+S+    KFYIDP KLLPL RFLP+P G+  P RGGGR GGRGGGRGG G GG 
Sbjct: 133 SENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEKGPPRGGGR-GGRGGGRGGGGRGGG 192

Query: 185 RGRG--GPRGGRGGPPRGGGRGGFRGRG 195
           RG G  G RGG GG  RGG  GGFRGRG
Sbjct: 193 RGGGFRGGRGGGGGGFRGGRGGGFRGRG 216


HSP 2 Score: 56.2 bits (134), Expect = 4.6e-07
Identity = 34/52 (65.38%), Postives = 32/52 (61.54%), Query Frame = 1 

Query: 152 RGGGRGGGRGGRGGGGF-RG------RGGPRGGRGGPPRGGGRGGF-RGRGR 196
           RGGGRGG   G GGGGF RG      RGG  GG GG  RGGGRGGF RG GR
Sbjct: 4   RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGR 55

[Close]
BLAST of Cla012132 vs. Swiss-Prot
Match: GAR1_MOUSE (H/ACA ribonucleoprotein complex subunit 1 OS=Mus musculus GN=Gar1 PE=1 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 8.2e-57
Identity = 119/197 (60.41%), Postives = 135/197 (68.53%), Query Frame = 1 

Query: 6   GGGGFRGGRDGGFGG-RGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACEG 65
           GGG FRGG  GG G  RGGGRGG GRGGGR    G   F+D+GPP  VV +  F+H CE 
Sbjct: 37  GGGSFRGGGGGGGGSFRGGGRGGFGRGGGR---GGFNKFQDQGPPERVVLLGEFMHPCED 96

Query: 66  DAVTKLTNE--KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGD 125
           D V K T E  K+P+FNAP+YL+NK Q+GKVDEIFG + + YFS+K+ E + A+S+    
Sbjct: 97  DIVCKCTTEENKVPYFNAPVYLENKEQVGKVDEIFGQLRDFYFSVKLSENMKASSFKKLQ 156

Query: 126 KFYIDPAKLLPLARFLPQPKGQ-FPSRGGGRG--GGRGGGRGGRGGGGFRGRG--GPRGG 185
           KFYIDP KLLPL RFLP+P G+  P RGGG G  GGRGGGRGG G GG RG G  G RGG
Sbjct: 157 KFYIDPYKLLPLQRFLPRPPGEKGPPRGGGGGGRGGRGGGRGGGGRGGGRGGGFRGGRGG 216

Query: 186 RGGPPRGGGRGGFRGRG 195
            GG   G G GGFRGRG
Sbjct: 217 GGGFRGGRGGGGFRGRG 230


HSP 2 Score: 214.5 bits (545), Expect = 1.0e-54
Identity = 123/225 (54.67%), Postives = 139/225 (61.78%), Query Frame = 1 

Query: 6   GGGGF-RGGRDGGFGGRGGG-----RGGGGRGGGRFGGRGGGG----------------- 65
           G GGF RGG  GGF  RGGG     RGGGG GGG F G GGGG                 
Sbjct: 7   GRGGFNRGGGGGGFN-RGGGSNNHFRGGGGGGGGSFRGGGGGGGGSFRGGGRGGFGRGGG 66

Query: 66  ------FRDEGPPSEVVEVSTFLHACEGDAVTKLTNE--KIPFFNAPIYLQNKTQIGKVD 125
                 F+D+GPP  VV +  F+H CE D V K T E  K+P+FNAP+YL+NK Q+GKVD
Sbjct: 67  RGGFNKFQDQGPPERVVLLGEFMHPCEDDIVCKCTTEENKVPYFNAPVYLENKEQVGKVD 126

Query: 126 EIFGPINESYFSIKMMEGIVATSYASGDKFYIDPAKLLPLARFLPQPKGQ-FPSRGGGRG 185
           EIFG + + YFS+K+ E + A+S+    KFYIDP KLLPL RFLP+P G+  P RGGG G
Sbjct: 127 EIFGQLRDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEKGPPRGGGGG 186

Query: 186 --GGRGGGRGGRGGGGFRGRG--GPRGGRGGPPRGGGRGGFRGRG 195
             GGRGGGRGG G GG RG G  G RGG GG   G G GGFRGRG
Sbjct: 187 GRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGFRGGRGGGGFRGRG 230


HSP 3 Score: 30.0 bits (66), Expect = 3.5e+01
Identity = 18/28 (64.29%), Postives = 16/28 (57.14%), Query Frame = 1 

Query: 168 FRGRGGPRGGRGGPPRGGGRGGF-RGRG 195
           FRG     GGRGG  RGGG GGF RG G
Sbjct: 3   FRG-----GGRGGFNRGGGGGGFNRGGG 25

[Close]
BLAST of Cla012132 vs. TrEMBL
Match: V3ZTB6_LOTGI (Uncharacterized protein OS=Lottia gigantea GN=LOTGIDRAFT_235760 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.2e-59
Identity = 128/201 (63.68%), Postives = 148/201 (73.63%), Query Frame = 1 

Query: 5   RGGGGFRGGRDGGFGGRGGGRGGGG-RGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 64
           RGGGG   GR GGF G GGGRGGGG RGGGR GGRGG   RD+GPP  V+E+  ++H CE
Sbjct: 4   RGGGG---GRGGGFRG-GGGRGGGGFRGGGR-GGRGGFN-RDQGPPESVIELGEYVHPCE 63

Query: 65  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 124
            D V K TNEK+P+FNAP++++NK QIGKVDEIFGPI + +FS+K+ +G+ A S++   K
Sbjct: 64  SDIVCKCTNEKVPYFNAPVFIENKQQIGKVDEIFGPIKDFFFSVKLSDGMKAKSFSKETK 123

Query: 125 FYIDPAKLLPLARFLPQPKGQFPSRGGGRGG--GRGGGR---GGRGG--GGFRGRGGPRG 184
           F+IDP KLLPL RFLPQPKG    RGGGRGG  GRGGGR   GGRGG  GGF GRGG RG
Sbjct: 124 FFIDPYKLLPLQRFLPQPKGSVQKRGGGRGGGRGRGGGRGSFGGRGGGRGGFGGRGGGRG 183

Query: 185 GRGGP---PRGGGRGGFRGRG 195
           GRGG     RGGG G  RG G
Sbjct: 184 GRGGGGSYGRGGGGGFGRGGG 198

[Close]
BLAST of Cla012132 vs. TrEMBL
Match: V3ZTB6_LOTGI (Uncharacterized protein OS=Lottia gigantea GN=LOTGIDRAFT_235760 PE=4 SV=1)

HSP 1 Score: 31.2 bits (69), Expect = 1.8e+03
Identity = 18/31 (58.06%), Postives = 18/31 (58.06%), Query Frame = 1 

Query: 2   RPPRGGGGFRGGRDGGFGGRGGGRGGGGRGG 33
           R  RGGGG  G   GG GG G G GG  RGG
Sbjct: 176 RGGRGGGGSYGR--GGGGGFGRGGGGSFRGG 204


HSP 2 Score: 237.7 bits (605), Expect = 1.2e-59
Identity = 134/219 (61.19%), Postives = 145/219 (66.21%), Query Frame = 1 

Query: 2   RPPRGGGGFRGGRDG---GFGGRGGGRGG-----GGRGGGRFGGRGGG----GFRDEGPP 61
           R  RGGGGFRGG  G   G GG GGGRGG     GG GGG  GGRGGG        +GPP
Sbjct: 3   RGGRGGGGFRGGSGGFRGGRGGAGGGRGGSGGFRGGGGGGFRGGRGGGQGSFNRTPQGPP 62

Query: 62  SEVVEVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKM 121
            EV+E+ TF+H CE   V K TN KIP+FNAPIYL+NKTQIGKVDEI GP+NE YF++ M
Sbjct: 63  DEVLEMGTFMHPCENQMVCKSTNTKIPYFNAPIYLENKTQIGKVDEILGPLNEVYFTVSM 122

Query: 122 MEGIVATSYASGDKFYIDPAKLLPLARFLPQPKG---------QFPSRGG--GRGGGRGG 181
            EG  ATS+   DK YI   KLLPL RFLP+PK          Q   RGG  GRGGGRGG
Sbjct: 123 NEGFPATSFKVNDKVYIGSDKLLPLERFLPRPKAAPRDKPTGLQGTGRGGSRGRGGGRGG 182

Query: 182 -GRGGRGGGGFRGRGGPRGG-RGGPPRGGGRGGFRGRGR 196
            G GGRGGGG   RG PRGG RGG  RGG  GGFRGRGR
Sbjct: 183 FGFGGRGGGGGGFRGAPRGGSRGGFSRGGAGGGFRGRGR 221

[Close]
BLAST of Cla012132 vs. TrEMBL
Match: C3Z5X3_BRAFL (Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_113668 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.4e-58
Identity = 131/209 (62.68%), Postives = 145/209 (69.38%), Query Frame = 1 

Query: 6   GGGGFRGGRDGGFGG-RGGGRGG--GGRGG--GRFGGRGGGGFR--DEGPPSEVVEVSTF 65
           GGGGFRGGR GGFGG RG G GG  GGRGG  GR GGRG GG+   D+GPP+EV E   +
Sbjct: 6   GGGGFRGGRGGGFGGGRGRGYGGDRGGRGGFRGRGGGRGRGGYNNYDQGPPAEVTEAGHY 65

Query: 66  LHACEGDAVTKLTN-EKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATS 125
           +H CEGD V K    EK+P+FNAPIYL+NK QIGKVDEIFG I + YFS+K+ E + A S
Sbjct: 66  VHPCEGDLVCKADLVEKVPYFNAPIYLENKEQIGKVDEIFGGIKDYYFSVKLGENMKAHS 125

Query: 126 YASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGG-------GGFRG 185
           ++   KFYI   KLLPL RFLPQP G    RGGGR GGRGGGRGGRGG       GGF G
Sbjct: 126 FSKDQKFYISTEKLLPLQRFLPQPPGAKRGRGGGR-GGRGGGRGGRGGRGGFGGRGGFGG 185

Query: 186 ----RGGPRGGRGGPPRGGGRGGFRGRGR 196
               RGG RGG GG    GG GGFRGRGR
Sbjct: 186 RGRFRGGGRGGGGGFRGRGGGGGFRGRGR 213

[Close]
BLAST of Cla012132 vs. TrEMBL
Match: A0A137P5N3_CONC2 (Gar1-domain-containing protein OS=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) GN=CONCODRAFT_78916 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 5.2e-58
Identity = 126/213 (59.15%), Postives = 146/213 (68.54%), Query Frame = 1 

Query: 6   GGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACEGD 65
           G GGF GGR GG GG GGGRGG G GGGR GG GG      GPP+EV+E+ TF+H CEGD
Sbjct: 9   GNGGFGGGRGGGRGGFGGGRGGFG-GGGR-GGFGGRNSEPMGPPAEVLELGTFMHPCEGD 68

Query: 66  AVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFY 125
            V K TN KIP+FNAP+YL+NK+QIGKVDEI GP+NE YF++K+ +G+VA+S+   DK +
Sbjct: 69  MVCKSTNTKIPYFNAPVYLENKSQIGKVDEILGPMNEVYFTVKLQDGVVASSFKVDDKVF 128

Query: 126 IDPAKLLPLARFLPQPKG----QFPSRGGGR-------GGGRGGGRGGRGGGGFRGRGGP 185
           I   KLLPL +FLP+PKG    + P R GGR       GGGRGGGRGG GGG   GRGG 
Sbjct: 129 IGGDKLLPLEKFLPKPKGPAGPKPPKRAGGRGGARGGFGGGRGGGRGGFGGGRGGGRGGF 188

Query: 186 RGGRGGPP---------RGGGRGGFRG--RGRF 197
            GGRGG           RGGGRGGF G   GRF
Sbjct: 189 GGGRGGGSGGRGGFGGGRGGGRGGFGGGRGGRF 219

[Close]
BLAST of Cla012132 vs. TrEMBL
Match: A0A137P5N3_CONC2 (Gar1-domain-containing protein OS=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) GN=CONCODRAFT_78916 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 8.2e-03
Identity = 28/40 (70.00%), Postives = 28/40 (70.00%), Query Frame = 1 

Query: 154 GGRGGGRGGRGGGGFRGRGGPRGGRGGPPRGGGRGGFRGR 194
           GGRG G GG GGG   GRGG  GGRGG   GGGRGGF GR
Sbjct: 5   GGRG-GNGGFGGGRGGGRGGFGGGRGG-FGGGGRGGFGGR 42


HSP 2 Score: 223.0 bits (567), Expect = 3.2e-55
Identity = 123/202 (60.89%), Postives = 136/202 (67.33%), Query Frame = 1 

Query: 6   GGGGFRGGRDGGFGGRGGGRGG--GGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 65
           G GGF     G  GGRGGGRGG  GGRGGGR G   G     +GPP EVV +  F HACE
Sbjct: 2   GKGGF-----GERGGRGGGRGGFRGGRGGGRGGFNSGF---QQGPPDEVVAMGAFQHACE 61

Query: 66  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 125
           G+ V K  N KIP+FNAPIYL+NK+QIGKVDEI GP+NE YF++KM EG+VATS+   DK
Sbjct: 62  GEMVCKSINPKIPYFNAPIYLENKSQIGKVDEILGPLNEVYFTVKMQEGMVATSFKVNDK 121

Query: 126 FYIDPAKLLPLARFLPQPK------------GQFPSRGGGRGGGRGGGRGGRGGGGFRG- 185
            YI   KLLPL RFLP+PK            G+   RGGGRGG RGG RGGRG GGF G 
Sbjct: 122 VYIGSDKLLPLERFLPKPKVAGKASKATGLQGKVEKRGGGRGGSRGGARGGRGRGGFGGD 181

Query: 186 RGGPRGGRGGPPRGGGRGGFRG 193
           RGG  GGRGG   GGGRGGF G
Sbjct: 182 RGGFSGGRGG--FGGGRGGFGG 193

[Close]
BLAST of Cla012132 vs. NCBI nr
Match: gi|449459600|ref|XP_004147534.1| (PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis sativus])

HSP 1 Score: 402.5 bits (1033), Expect = 4.2e-109
Identity = 193/197 (97.97%), Postives = 193/197 (97.97%), Query Frame = 1 

Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLH 60
           MRPPRGGGGFRGGRDG   GRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLH
Sbjct: 1   MRPPRGGGGFRGGRDG---GRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLH 60

Query: 61  ACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYAS 120
           ACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYAS
Sbjct: 61  ACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYAS 120

Query: 121 GDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGG 180
           GDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGG
Sbjct: 121 GDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGG 180

Query: 181 PPRGGGR-GGFRGRGRF 197
           PPRGGGR GGFRGRGRF
Sbjct: 181 PPRGGGRGGGFRGRGRF 194

[Close]
BLAST of Cla012132 vs. NCBI nr
Match: gi|802585490|ref|XP_012070456.1| (PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Jatropha curcas])

HSP 1 Score: 352.4 bits (903), Expect = 4.9e-94
Identity = 176/197 (89.34%), Postives = 181/197 (91.88%), Query Frame = 1 

Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGR-GGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPR GGGFRGGRDGG  G GGGRGG GR GGGRFGG G GGFRDEGPPSEVVEVSTFL
Sbjct: 1   MRPPR-GGGFRGGRDGG-RGFGGGRGGRGRGGGGRFGGGGPGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120
           HACEGDAVTKLTNEKIP+FNAPI+LQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA
Sbjct: 61  HACEGDAVTKLTNEKIPYFNAPIFLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGR-GGRGGGGFRGRGGPRGGR 180
           +GDKF+IDP KLLPLARFLPQPKGQ  +  GGRGGGRGGGR GGRGGGGFRGRGGPRGGR
Sbjct: 121 TGDKFFIDPNKLLPLARFLPQPKGQAQAGRGGRGGGRGGGRGGGRGGGGFRGRGGPRGGR 180

Query: 181 GGPPRGGGRGGFRGRGR 196
           GGPPRGG  GGFRGRGR
Sbjct: 181 GGPPRGGRGGGFRGRGR 195

[Close]
BLAST of Cla012132 vs. NCBI nr
Match: gi|356571696|ref|XP_003554010.1| (PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Glycine max])

HSP 1 Score: 344.0 bits (881), Expect = 1.8e-91
Identity = 175/207 (84.54%), Postives = 181/207 (87.44%), Query Frame = 1 

Query: 1   MRPPRGGG---GFRGGRDGGF-GGRGGG---RGGGGRGGGRFGGRGGG-----GFRDEGP 60
           MRPPRGGG   GFRGGRDGGF GGR GG   RGG GRGGG FG  GGG     GFRDEGP
Sbjct: 1   MRPPRGGGRGGGFRGGRDGGFRGGRDGGGRGRGGFGRGGGGFGRGGGGFGRGGGFRDEGP 60

Query: 61  PSEVVEVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIK 120
           PSEVVEVS+F+HACEGDAVTKLTNEK+PFFNAPIYL+N TQIGKVDEIFGPINE+YFSIK
Sbjct: 61  PSEVVEVSSFMHACEGDAVTKLTNEKVPFFNAPIYLKNMTQIGKVDEIFGPINEAYFSIK 120

Query: 121 MMEGIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGF 180
           MMEGIVATSY+SGDKFYIDP KLLPLARFLPQPKGQ   RGGG GGGRGGGRGGRGGGGF
Sbjct: 121 MMEGIVATSYSSGDKFYIDPRKLLPLARFLPQPKGQSAGRGGG-GGGRGGGRGGRGGGGF 180

Query: 181 RGRGGPRGGRGGPPRGGGRGGFRGRGR 196
           RGRGGPRGGRGGPPRG   GGFRGRGR
Sbjct: 181 RGRGGPRGGRGGPPRG---GGFRGRGR 203

[Close]
BLAST of Cla012132 vs. NCBI nr
Match: gi|1012352602|gb|KYP63790.1| (Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cajanus cajan])

HSP 1 Score: 335.1 bits (858), Expect = 8.2e-89
Identity = 173/202 (85.64%), Postives = 177/202 (87.62%), Query Frame = 1 

Query: 1   MRPPRG---GGGFRGGRDGGFGGRGGGRGGG-GRGG-GRFGGRGGGGFRDEGPPSEVVEV 60
           MRPPRG   GGGFRGGRDGG G RGG  GGG GRGG GR GG  GGGFRDEGPPSEVVEV
Sbjct: 1   MRPPRGAGRGGGFRGGRDGG-GFRGGRDGGGRGRGGFGRGGGGRGGGFRDEGPPSEVVEV 60

Query: 61  STFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVA 120
           S FLHACEGDAVTKLTNEK+PFFNAPIYL+N TQIGKVDEIFGPINE+YFSIKMMEGIVA
Sbjct: 61  SQFLHACEGDAVTKLTNEKVPFFNAPIYLKNMTQIGKVDEIFGPINEAYFSIKMMEGIVA 120

Query: 121 TSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGG-GRGGRGGGGFRGRGGP 180
           TSYA+ DKFYIDP KLLPLARFLPQPKGQ     GG GGGRGG G GGRGGGGFRGRGGP
Sbjct: 121 TSYAAEDKFYIDPRKLLPLARFLPQPKGQSQGGRGGGGGGRGGRGGGGRGGGGFRGRGGP 180

Query: 181 RGGRGGPPRGGGR-GGFRGRGR 196
           RGGRGGPPRGGGR GGFRGRGR
Sbjct: 181 RGGRGGPPRGGGRGGGFRGRGR 201

[Close]
BLAST of Cla012132 vs. NCBI nr
Match: gi|568850844|ref|XP_006479107.1| (PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Citrus sinensis])

HSP 1 Score: 332.0 bits (850), Expect = 6.9e-88
Identity = 169/202 (83.66%), Postives = 177/202 (87.62%), Query Frame = 1 

Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGR-GGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGGGFRGGRDGG GGRGGGR GGGGRGGG   GRGG GFRDEGPP+EVVEVS+FL
Sbjct: 1   MRPPRGGGGFRGGRDGGRGGRGGGRFGGGGRGGG---GRGGFGFRDEGPPAEVVEVSSFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120
           HACEGDAVTKLTNEKIP+FNAPIYLQNKTQIGKVDEIFGPINESYFS+KMMEGIVATSY+
Sbjct: 61  HACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYS 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGG--GGFRGRGGPRG- 180
            GDKFYIDP+KLLPLARFLPQPKGQ  ++ G RGG  GGG  GRGG  GG RGRGG  G 
Sbjct: 121 LGDKFYIDPSKLLPLARFLPQPKGQ--AQAGARGGRGGGGFRGRGGGRGGGRGRGGGGGG 180

Query: 181 --GRGGPPRGGGRGGFRGRGRF 197
             GRGGPPRGG  GGFRGRGRF
Sbjct: 181 FRGRGGPPRGGRGGGFRGRGRF 197

The following BLAST results are available for this feature:
BLAST of Cla012132 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NLAL1_ARATH1.1e-8279.80Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis... [more]
GAR1_XENTR7.2e-6166.01H/ACA ribonucleoprotein complex subunit 1 OS=Xenopus tropicalis GN=gar1 PE=2 SV=... [more]
GAR1_CHAGB3.3e-5859.05H/ACA ribonucleoprotein complex subunit 1 OS=Chaetomium globosum (strain ATCC 62... [more]
GAR1_HUMAN4.8e-5759.62H/ACA ribonucleoprotein complex subunit 1 OS=Homo sapiens GN=GAR1 PE=1 SV=1[more]
GAR1_MOUSE8.2e-5760.41H/ACA ribonucleoprotein complex subunit 1 OS=Mus musculus GN=Gar1 PE=1 SV=1[more]
BLAST of Cla012132 vs. TrEMBL
Match NameE-valueIdentityDescription
V3ZTB6_LOTGI1.2e-5963.68Uncharacterized protein OS=Lottia gigantea GN=LOTGIDRAFT_235760 PE=4 SV=1[more]
V3ZTB6_LOTGI1.8e+0358.06Uncharacterized protein OS=Lottia gigantea GN=LOTGIDRAFT_235760 PE=4 SV=1[more]
C3Z5X3_BRAFL1.4e-5862.68Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_113668 ... [more]
A0A137P5N3_CONC25.2e-5859.15Gar1-domain-containing protein OS=Conidiobolus coronatus (strain ATCC 28846 / CB... [more]
A0A137P5N3_CONC28.2e-0370.00Gar1-domain-containing protein OS=Conidiobolus coronatus (strain ATCC 28846 / CB... [more]
BLAST of Cla012132 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449459600|ref|XP_004147534.1|4.2e-10997.97PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cu... [more]
gi|802585490|ref|XP_012070456.1|4.9e-9489.34PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Ja... [more]
gi|356571696|ref|XP_003554010.1|1.8e-9184.54PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Gl... [more]
gi|1012352602|gb|KYP63790.1|8.2e-8985.64Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cajanus cajan... [more]
gi|568850844|ref|XP_006479107.1|6.9e-8883.66PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Ci... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007504H/ACA_rnp_Gar1/Naf1
IPR009000Transl_B-barrel_sf
IPR021154H/ACA_rnp_Gar1
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0042254ribosome biogenesis
Vocabulary: Cellular Component
TermDefinition
GO:0031429box H/ACA snoRNP complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006364 rRNA processing
cellular_component GO:0031429 box H/ACA snoRNP complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0003723 RNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU05961watermelon EST collection version 2.0transcribed_cluster
WMU42566watermelon EST collection version 2.0transcribed_cluster
WMU56604watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla012132Cla012132.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU42566WMU42566transcribed_cluster
WMU05961WMU05961transcribed_cluster
WMU56604WMU56604transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007504H/ACA ribonucleoprotein complex, subunit Gar1/Naf1PFAMPF04410Gar1coord: 44..143
score: 1.3
IPR009000Translation protein, beta-barrel domainunknownSSF50447Translation proteinscoord: 53..127
score: 1.94
IPR021154H/ACA ribonucleoprotein complex, subunit Gar1PRODOMPD020235coord: 54..137
score: 4.0
IPR021154H/ACA ribonucleoprotein complex, subunit Gar1PANTHERPTHR23237NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1coord: 1..196
score: 3.0
NoneNo IPR availableGENE3DG3DSA:2.40.10.230coord: 47..128
score: 1.8