CSPI04G11250 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G11250
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	H/ACA ribonucleoprotein complex subunit 1-like protein 1
Location	Chr4 : 9548198 .. 9550204 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACCTCCAAGAGGCGGCGGCGGCTTCAGAGGAGGCCGTGATGGTGGTAGAGGAGGTGGACGTGGCGGCGGTGGCAGGGGAGGTGGTCGCTTTGGTGGTCGTGGAGGCGGAGGCTTCCGTGATGAGGGTCCTCCATCTGAAGTCGTTGGTTCGTATCTACCATTATTTGCTTTTTCCTTCACCTTTCGCTTCTTTTCTTGCTACCTTGATGTTTTCAGAAAACAGTTTTTGTTACAATGCGATGTTCACTTGGGCTCCTTAAGGCAGACTAGTTATCGGTTTTTGCGTTTGTATAATCGGAAATAACGATGGATTCTGCTTTTGAACTTTCCCTCTCTCTAGCTGTTTGAACTTTGATGTTTCATGTCTATGAATGAATCACACAAGTTCACCTATATTCGTCACTAAATTTTTTTTTCCTTGCTACAGAGGTTTCTACTTTCCTTCATGCGTGTGAGGGAGATGCAGTCACAAAGCTCACAAATGAGAAGATTCCTTTCTTTAATGCTCCTATTTATCTTCAGAACAAGACTCAGATAGGGAAAGTTGATGAAATTTTCGGCCCCATCAATGAATCTGTGAGTTCACTGGCCTTGATTTTTGTTGTTGTTTAGTTTTGATATATGATGAATGGTGTTGTTTTCATTAAAATAATGATAAATCATTGCTTTTGTTAATCTGATTCCAGTACTTCTCGATCAAAATGATGGAAGGAATTGTCGCAACCTCTTACGCTTCTGGGGATAAATTTTATATTGATCCAGCTAAACTCCTACCACTTGCTAGATTTCTCCCACAACCAAAGTACGTAACCCATCTCTTTCCTTTTTCCCACCTCAAATGAGGTCTAGAAATTTGAGTTTGATCATCGAGATGTTTATTAGCATCAATTTCCAAGTTATTGCTTGTGTTCATTTGTCTTGAGAGGTTTTATAAGGGCTTTTATGGTACCGCAATAAAAAAGAAGAGCTTTTTTGGTGCCCATTGCACATAGCTTTAGGTTTATTGTTCAGGAGTATGGTTTGGATAGAATTTCAGGGTTTTTTTTTTTGCATTTTTCTTTGTTTTTGTTGAATCTTGAACAGAGGTGGGGTAATTAGTAAAACAATCTATTATAGTTGAAACTTTGGCCTCCGAATTGAGTATAATCACGAGTAACTTGAAATACTGGTGCCATCCTGAATAGAATTTTGTCAGTTTTATTTTATTTTATTTTTTAATTTTTTTTGTTTAGATAGTAGATACATCGTTCTCTATAGTTCCAAATTCTCGTAATTTAAACTAACAATGTAGGTTCATATTATGGGTCTGATGTGACGATGAAAAATTCCAAAACCTGTCTTTTGTGCTTCTAATATCTTATTGCTTCATTACGCGGATGTTATACTTCAGTGGCCCTATTTTGTGTTGAGAAAAACAAATTTTTAAAATTGAAAAAATCAAGGAACAAGTGAGCAATGCTTCACAATGTTTGTGTTAAGATTCAGTATAGAAATAACATTTGTCTGATGATTATTTCAGGGGACAGTTTCCCTCTAGAGGCGGAGGTCGTGGAGGGGGCAGAGGTGGCGGCAGAGGTGGCCGTGGAGGTGGCGGTTTTCGTGGCAGAGGTGGCCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGTGGCTTTAGGGGTAGAGGAAGATTCTAGATTAGCATTATGTAACATCATAGTTTTACCAATTTTCCATTTGCAATGTTTTGAGAAGCGCTTGCAAGAGTCTTTTGTTTGCACTGTATTTTATTTGGAATTGAACCTCTTAGTATTGAAGCTACTACCTAATTTAATTCTGCTCCAAATTTTAATGTTTTATTAACCACCTCTAATTTTGCAATTTGTTCCTGAATATATACATGGATCAAGGTCGTGGAAGATGAAATTTAGTTTGTCATATTCCTCATACAGCTGAATTTCTGAGTGCTGCGCTTTTTGAACAGAATAAGACCAATGTCCATAGGCTTTGA

mRNA sequence

ATGAGACCTCCAAGAGGCGGCGGCGGCTTCAGAGGAGGCCGTGATGGTGGTAGAGGAGGTGGACGTGGCGGCGGTGGCAGGGGAGGTGGTCGCTTTGGTGGTCGTGGAGGCGGAGGCTTCCGTGATGAGGGTCCTCCATCTGAAGTCGTTGAGGTTTCTACTTTCCTTCATGCGTGTGAGGGAGATGCAGTCACAAAGCTCACAAATGAGAAGATTCCTTTCTTTAATGCTCCTATTTATCTTCAGAACAAGACTCAGATAGGGAAAGTTGATGAAATTTTCGGCCCCATCAATGAATCTTACTTCTCGATCAAAATGATGGAAGGAATTGTCGCAACCTCTTACGCTTCTGGGGATAAATTTTATATTGATCCAGCTAAACTCCTACCACTTGCTAGATTTCTCCCACAACCAAAGGGACAGTTTCCCTCTAGAGGCGGAGGTCGTGGAGGGGGCAGAGGTGGCGGCAGAGGTGGCCGTGGAGGTGGCGGTTTTCGTGGCAGAGGTGGCCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGTGGCTTTAGGGCTGAATTTCTGAGTGCTGCGCTTTTTGAACAGAATAAGACCAATGTCCATAGGCTTTGA

Coding sequence (CDS)

ATGAGACCTCCAAGAGGCGGCGGCGGCTTCAGAGGAGGCCGTGATGGTGGTAGAGGAGGTGGACGTGGCGGCGGTGGCAGGGGAGGTGGTCGCTTTGGTGGTCGTGGAGGCGGAGGCTTCCGTGATGAGGGTCCTCCATCTGAAGTCGTTGAGGTTTCTACTTTCCTTCATGCGTGTGAGGGAGATGCAGTCACAAAGCTCACAAATGAGAAGATTCCTTTCTTTAATGCTCCTATTTATCTTCAGAACAAGACTCAGATAGGGAAAGTTGATGAAATTTTCGGCCCCATCAATGAATCTTACTTCTCGATCAAAATGATGGAAGGAATTGTCGCAACCTCTTACGCTTCTGGGGATAAATTTTATATTGATCCAGCTAAACTCCTACCACTTGCTAGATTTCTCCCACAACCAAAGGGACAGTTTCCCTCTAGAGGCGGAGGTCGTGGAGGGGGCAGAGGTGGCGGCAGAGGTGGCCGTGGAGGTGGCGGTTTTCGTGGCAGAGGTGGCCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGTGGCTTTAGGGCTGAATTTCTGAGTGCTGCGCTTTTTGAACAGAATAAGACCAATGTCCATAGGCTTTGA

Homology

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BLAST of CSPI04G11250 vs. Swiss-Prot
Match: NLAL1_ARATH (Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana GN=At3g03920 PE=2 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 4.7e-58
Identity = 156/196 (79.59%), Postives = 162/196 (82.65%), Query Frame = 1


Query: 1   MRPP-RGGGGFRG--GRDGGRGGGR--GGGGR---GGGRFGGRGG--GGFRDEGPPSEVV 60
           MRPP RGGGGFRG  GRDGG GGGR  GGGGR   GGGRFGG GG  GGFRDEGPPSEVV
Sbjct: 1   MRPPMRGGGGFRGRGGRDGG-GGGRFGGGGGRFGGGGGRFGGGGGRFGGFRDEGPPSEVV 60

Query: 61  EVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGI 120
           EV+TF+HACEGDAVTKL+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FSIKMMEGI
Sbjct: 61  EVATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGI 120

Query: 121 VATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRG-GRGGGGFRGRG 180
           VATSY+ GDKF+IDP KLLPLARFLPQPKGQ     GG G GRG  RG GRGG   RGRG
Sbjct: 121 VATSYSPGDKFFIDPYKLLPLARFLPQPKGQSTGGRGGAGRGRGDSRGRGRGGSFSRGRG 180

Query: 181 GPRGGRGGPPRGGGRG 186
            PRGGR  PPRGG RG
Sbjct: 181 APRGGR-FPPRGGSRG 194

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BLAST of CSPI04G11250 vs. Swiss-Prot
Match: NLAL2_ARATH (H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana GN=At5g18180 PE=2 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 6.7e-49
Identity = 139/187 (74.33%), Postives = 145/187 (77.54%), Query Frame = 1


Query: 1   MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 60
           MRPPRGGG FRG   GGR  G  G GRG GR  GR GGG  DEGPPSEVVEV+TFLHACE
Sbjct: 1   MRPPRGGGSFRGR--GGRDNGGRGRGRGRGR--GRFGGGNYDEGPPSEVVEVATFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120
           GDAV KL+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FSIKM EGIVATSY+ GDK
Sbjct: 61  GDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATSYSQGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRG-GRGGPP 180
           F+I P KLLPL+RFLPQPKGQ   RG GR   RG G   RG G FRGRG PRG  RG  P
Sbjct: 121 FFISPEKLLPLSRFLPQPKGQSGGRGEGRVPPRGRG-PPRGRGNFRGRGAPRGASRGFQP 180

Query: 181 RGGGRGG 187
           RGG RGG
Sbjct: 181 RGGPRGG 182

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BLAST of CSPI04G11250 vs. Swiss-Prot
Match: GAR1_CHAGB (H/ACA ribonucleoprotein complex subunit 1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=GAR1 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 7.5e-40
Identity = 119/202 (58.91%), Postives = 133/202 (65.84%), Query Frame = 1


Query: 17  GRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACEGDAVTKLTNEKIPFFN 76
           G   GRGGGG GGGR GGRGG   RD GPP+ V+E+  F+HACEG+ V + TN K+P FN
Sbjct: 5   GAPRGRGGGGFGGGRGGGRGGFQQRDMGPPATVLEMGKFIHACEGEMVIESTNPKVPHFN 64

Query: 77  APIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFYIDPAKLLPLARFLP 136
           APIYL+NKT +GKVDE+ GPIN+ YF+IK  EGI ATS+  GDKFYI   KLLPL RFLP
Sbjct: 65  APIYLENKTAVGKVDEVLGPINQVYFTIKPSEGIQATSFKYGDKFYIAGEKLLPLERFLP 124

Query: 137 QPK-------------------------GQFPSRGGGRGGGRGGGRGGRGGGGF-----R 188
           +PK                         G   SRGGGRGGGRGG  G RGGGGF      
Sbjct: 125 KPKPPPGTVSKVKKPSRGGAARGGRGGPGGGFSRGGGRGGGRGGFGGSRGGGGFGGGFGG 184

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BLAST of CSPI04G11250 vs. Swiss-Prot
Match: GAR1_XENTR (H/ACA ribonucleoprotein complex subunit 1 OS=Xenopus tropicalis GN=gar1 PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.7e-39
Identity = 129/201 (64.18%), Postives = 145/201 (72.14%), Query Frame = 1


Query: 5   RGGGGFRGGRD-GGRGGGRGGGGRGGGRFG-GRGGG--GFR----DEGPPSEVVEVSTFL 64
           RGGGG RGG   GGRGGGRGG G+GGGR G GRGGG  GF     D+GPP  VVEV  F+
Sbjct: 11  RGGGGGRGGGGFGGRGGGRGGYGQGGGRGGFGRGGGRGGFNRGGYDQGPPESVVEVGEFM 70

Query: 65  HACEGDAVTK-LTNE-KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATS 124
           H CE D V K +T E ++P+FNAPIYL+NK QIGKVDEIFG + + YFSIK+ E + A+S
Sbjct: 71  HPCEDDVVCKCITQENRVPYFNAPIYLENKEQIGKVDEIFGQLRDFYFSIKLSENMKASS 130

Query: 125 YASGDKFYIDPAKLLPLARFLPQPKGQ-FPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRG 184
           +    KFYIDPAKLLPL RFLP+P G+  P RGGGRGGGRGGGRG  GG G  G GG RG
Sbjct: 131 FKKLQKFYIDPAKLLPLQRFLPRPPGEKGPPRGGGRGGGRGGGRGRGGGRG--GGGGFRG 190

Query: 185 GRGGPPRGGG-----RGGGFR 190
           GRGG   GGG     RGGGFR
Sbjct: 191 GRGGGFGGGGGFRGSRGGGFR 209

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BLAST of CSPI04G11250 vs. Swiss-Prot
Match: GAR1_NEOFI (H/ACA ribonucleoprotein complex subunit 1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=gar1 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.0e-37
Identity = 117/193 (60.62%), Postives = 135/193 (69.95%), Query Frame = 1


Query: 18  RGGGRGG---GGRGGGRFGGRGG-GGFRDE-GPPSEVVEVSTFLHACEGDAVTKLTNEKI 77
           RGGGRGG   G   GG FGGRGG GGF+ + GPP++V+E+ TF+HACEG+ V +  N KI
Sbjct: 4   RGGGRGGFASGANRGGNFGGRGGRGGFQAQTGPPAQVLEMGTFMHACEGEMVCESVNPKI 63

Query: 78  PFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFYIDPAKLLPLA 137
           P+FNAPIYL+NKT IGKVDE+ GPIN+ YF+IK  EGIVATS+  GDK YI   KLLPL 
Sbjct: 64  PYFNAPIYLENKTPIGKVDEVLGPINQVYFTIKPQEGIVATSFKPGDKVYIGGDKLLPLE 123

Query: 138 RFLPQPK---GQFPSRG-GGRGG-GRGGGRGGRG------GGGFRGRGGPRGG------- 188
           +FLP+PK   G  P +  GGRGG  RGG RGGRG      GG  RGRGGPRGG       
Sbjct: 124 KFLPKPKPPPGSKPKKAVGGRGGFARGGARGGRGAPRGGRGGAPRGRGGPRGGGFGGGSF 183

[Close]

BLAST of CSPI04G11250 vs. TrEMBL
Match: A0A0A0KWF0_CUCSA (H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Cucumis sativus GN=Csa_4G192120 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 5.5e-90
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1


Query: 1   MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 60
           MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE
Sbjct: 1   MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPPR 180
           FYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPPR
Sbjct: 121 FYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPPR 180

Query: 181 GGGRGGGFR 190
           GGGRGGGFR
Sbjct: 181 GGGRGGGFR 189

[Close]

BLAST of CSPI04G11250 vs. TrEMBL
Match: A0A067L6M8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02724 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 2.1e-73
Identity = 174/193 (90.16%), Postives = 179/193 (92.75%), Query Frame = 1


Query: 1   MRPPRGGGGFRGGRDGGRG--GGRGGGGRGGG-RFGGRGGGGFRDEGPPSEVVEVSTFLH 60
           MRPPRGGG FRGGRDGGRG  GGRGG GRGGG RFGG G GGFRDEGPPSEVVEVSTFLH
Sbjct: 1   MRPPRGGG-FRGGRDGGRGFGGGRGGRGRGGGGRFGGGGPGGFRDEGPPSEVVEVSTFLH 60

Query: 61  ACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYAS 120
           ACEGDAVTKLTNEKIP+FNAPI+LQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA+
Sbjct: 61  ACEGDAVTKLTNEKIPYFNAPIFLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYAT 120

Query: 121 GDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGR-GGRGGGGFRGRGGPRGGRG 180
           GDKF+IDP KLLPLARFLPQPKGQ  +  GGRGGGRGGGR GGRGGGGFRGRGGPRGGRG
Sbjct: 121 GDKFFIDPNKLLPLARFLPQPKGQAQAGRGGRGGGRGGGRGGGRGGGGFRGRGGPRGGRG 180

Query: 181 GPPRGGGRGGGFR 190
           GPPR GGRGGGFR
Sbjct: 181 GPPR-GGRGGGFR 191

[Close]

BLAST of CSPI04G11250 vs. TrEMBL
Match: I1ML28_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G041400 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 2.3e-72
Identity = 168/192 (87.50%), Postives = 175/192 (91.15%), Query Frame = 1


Query: 1   MRPPRGGG---GFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLH 60
           MRPPRGGG   GFRGGRDGG G GRGG GRGGG FG  GGGG+RDEGPPSEVVEVS+F+H
Sbjct: 1   MRPPRGGGRGGGFRGGRDGG-GRGRGGFGRGGGGFGRGGGGGYRDEGPPSEVVEVSSFMH 60

Query: 61  ACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYAS 120
           ACEGDAVTKLTNEK+PFFNAPIYL+N TQIGKVDEIFGPINE+YFSIKMMEGIVATSY+S
Sbjct: 61  ACEGDAVTKLTNEKVPFFNAPIYLKNMTQIGKVDEIFGPINEAYFSIKMMEGIVATSYSS 120

Query: 121 GDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGG 180
           GDKFYIDP KLLPLARFLPQPKGQ   RGGG GGGRGG RGGRGGGGFRGRG PRGGRGG
Sbjct: 121 GDKFYIDPRKLLPLARFLPQPKGQSAGRGGG-GGGRGGFRGGRGGGGFRGRGAPRGGRGG 180

Query: 181 PPRGGGRGGGFR 190
           PPRGGGRGGGFR
Sbjct: 181 PPRGGGRGGGFR 190

[Close]

BLAST of CSPI04G11250 vs. TrEMBL
Match: A0A061F3J0_THECC (H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Theobroma cacao GN=TCM_026465 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 3.0e-72
Identity = 169/191 (88.48%), Postives = 176/191 (92.15%), Query Frame = 1


Query: 1   MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 60
           MRPPRGGGGFRGGRDGGRG  RGGG  GGGR  GRGGGGFRDEGPP+EVVE+STFLHACE
Sbjct: 1   MRPPRGGGGFRGGRDGGRG--RGGGRGGGGRGFGRGGGGFRDEGPPAEVVEISTFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120
           GDAVTKLTNEKIP+FNAPIYLQNKTQIGKVDEIFGPINESYFSIKM+EGIVATSYA GDK
Sbjct: 61  GDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMLEGIVATSYALGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKGQFPSRG-GGRGGGRGGGR-GGRGGGGFRGRGGPRGGRGGP 180
           FYIDP+KLLPLA+FLPQPKGQ  +   GGRGGGRGGGR GGRGGGGFRGRG PRGGRGG 
Sbjct: 121 FYIDPSKLLPLAKFLPQPKGQSQAGARGGRGGGRGGGRGGGRGGGGFRGRGAPRGGRGG- 180

Query: 181 PRGGGRGGGFR 190
           PRGGGRGGGFR
Sbjct: 181 PRGGGRGGGFR 188

[Close]

BLAST of CSPI04G11250 vs. TrEMBL
Match: A0A0D2RA46_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G244500 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 5.2e-72
Identity = 170/191 (89.01%), Postives = 175/191 (91.62%), Query Frame = 1


Query: 1   MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 60
           MRPPRGGGGFRGGRDGGRG  RGGG  G GR GGRGGGGFRDEGPP+EVVEVSTF+HACE
Sbjct: 1   MRPPRGGGGFRGGRDGGRG--RGGGRGGFGRGGGRGGGGFRDEGPPAEVVEVSTFVHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120
           GDAVTKLTNEKIP+FNA IYLQNKTQIGKVDEIFGPINESYFSIKM+EGIVATSYA GDK
Sbjct: 61  GDAVTKLTNEKIPYFNANIYLQNKTQIGKVDEIFGPINESYFSIKMLEGIVATSYAPGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKGQFPSRG-GGRGGGRGGGR-GGRGGGGFRGRGGPRGGRGGP 180
           FYIDP+KLLPLARFLPQPKGQ    G GGRGGGRGGGR GGRGGGGFRGRG PRGGRGG 
Sbjct: 121 FYIDPSKLLPLARFLPQPKGQAQGGGRGGRGGGRGGGRGGGRGGGGFRGRGAPRGGRGG- 180

Query: 181 PRGGGRGGGFR 190
           PRGGGRGGGFR
Sbjct: 181 PRGGGRGGGFR 188

[Close]

BLAST of CSPI04G11250 vs. TAIR10
Match: AT3G03920.1 (AT3G03920.1 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein)

HSP 1 Score: 225.7 bits (574), Expect = 2.6e-59
Identity = 156/196 (79.59%), Postives = 162/196 (82.65%), Query Frame = 1


Query: 1   MRPP-RGGGGFRG--GRDGGRGGGR--GGGGR---GGGRFGGRGG--GGFRDEGPPSEVV 60
           MRPP RGGGGFRG  GRDGG GGGR  GGGGR   GGGRFGG GG  GGFRDEGPPSEVV
Sbjct: 1   MRPPMRGGGGFRGRGGRDGG-GGGRFGGGGGRFGGGGGRFGGGGGRFGGFRDEGPPSEVV 60

Query: 61  EVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGI 120
           EV+TF+HACEGDAVTKL+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FSIKMMEGI
Sbjct: 61  EVATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGI 120

Query: 121 VATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRG-GRGGGGFRGRG 180
           VATSY+ GDKF+IDP KLLPLARFLPQPKGQ     GG G GRG  RG GRGG   RGRG
Sbjct: 121 VATSYSPGDKFFIDPYKLLPLARFLPQPKGQSTGGRGGAGRGRGDSRGRGRGGSFSRGRG 180

Query: 181 GPRGGRGGPPRGGGRG 186
            PRGGR  PPRGG RG
Sbjct: 181 APRGGR-FPPRGGSRG 194

[Close]

BLAST of CSPI04G11250 vs. TAIR10
Match: AT5G18180.1 (AT5G18180.1 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein)

HSP 1 Score: 195.3 bits (495), Expect = 3.8e-50
Identity = 139/187 (74.33%), Postives = 145/187 (77.54%), Query Frame = 1


Query: 1   MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 60
           MRPPRGGG FRG   GGR  G  G GRG GR  GR GGG  DEGPPSEVVEV+TFLHACE
Sbjct: 1   MRPPRGGGSFRGR--GGRDNGGRGRGRGRGR--GRFGGGNYDEGPPSEVVEVATFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120
           GDAV KL+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FSIKM EGIVATSY+ GDK
Sbjct: 61  GDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATSYSQGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRG-GRGGPP 180
           F+I P KLLPL+RFLPQPKGQ   RG GR   RG G   RG G FRGRG PRG  RG  P
Sbjct: 121 FFISPEKLLPLSRFLPQPKGQSGGRGEGRVPPRGRG-PPRGRGNFRGRGAPRGASRGFQP 180

Query: 181 RGGGRGG 187
           RGG RGG
Sbjct: 181 RGGPRGG 182

[Close]

BLAST of CSPI04G11250 vs. NCBI nr
Match: gi|449459600|ref|XP_004147534.1| (PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis sativus])

HSP 1 Score: 338.6 bits (867), Expect = 7.9e-90
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1


Query: 1   MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 60
           MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE
Sbjct: 1   MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPPR 180
           FYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPPR
Sbjct: 121 FYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPPR 180

Query: 181 GGGRGGGFR 190
           GGGRGGGFR
Sbjct: 181 GGGRGGGFR 189

[Close]

BLAST of CSPI04G11250 vs. NCBI nr
Match: gi|802585490|ref|XP_012070456.1| (PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Jatropha curcas])

HSP 1 Score: 283.5 bits (724), Expect = 3.0e-73
Identity = 174/193 (90.16%), Postives = 179/193 (92.75%), Query Frame = 1


Query: 1   MRPPRGGGGFRGGRDGGRG--GGRGGGGRGGG-RFGGRGGGGFRDEGPPSEVVEVSTFLH 60
           MRPPRGGG FRGGRDGGRG  GGRGG GRGGG RFGG G GGFRDEGPPSEVVEVSTFLH
Sbjct: 1   MRPPRGGG-FRGGRDGGRGFGGGRGGRGRGGGGRFGGGGPGGFRDEGPPSEVVEVSTFLH 60

Query: 61  ACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYAS 120
           ACEGDAVTKLTNEKIP+FNAPI+LQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA+
Sbjct: 61  ACEGDAVTKLTNEKIPYFNAPIFLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYAT 120

Query: 121 GDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGR-GGRGGGGFRGRGGPRGGRG 180
           GDKF+IDP KLLPLARFLPQPKGQ  +  GGRGGGRGGGR GGRGGGGFRGRGGPRGGRG
Sbjct: 121 GDKFFIDPNKLLPLARFLPQPKGQAQAGRGGRGGGRGGGRGGGRGGGGFRGRGGPRGGRG 180

Query: 181 GPPRGGGRGGGFR 190
           GPPR GGRGGGFR
Sbjct: 181 GPPR-GGRGGGFR 191

[Close]

BLAST of CSPI04G11250 vs. NCBI nr
Match: gi|356560951|ref|XP_003548749.1| (PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Glycine max])

HSP 1 Score: 280.0 bits (715), Expect = 3.3e-72
Identity = 168/192 (87.50%), Postives = 175/192 (91.15%), Query Frame = 1


Query: 1   MRPPRGGG---GFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLH 60
           MRPPRGGG   GFRGGRDGG G GRGG GRGGG FG  GGGG+RDEGPPSEVVEVS+F+H
Sbjct: 1   MRPPRGGGRGGGFRGGRDGG-GRGRGGFGRGGGGFGRGGGGGYRDEGPPSEVVEVSSFMH 60

Query: 61  ACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYAS 120
           ACEGDAVTKLTNEK+PFFNAPIYL+N TQIGKVDEIFGPINE+YFSIKMMEGIVATSY+S
Sbjct: 61  ACEGDAVTKLTNEKVPFFNAPIYLKNMTQIGKVDEIFGPINEAYFSIKMMEGIVATSYSS 120

Query: 121 GDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGG 180
           GDKFYIDP KLLPLARFLPQPKGQ   RGGG GGGRGG RGGRGGGGFRGRG PRGGRGG
Sbjct: 121 GDKFYIDPRKLLPLARFLPQPKGQSAGRGGG-GGGRGGFRGGRGGGGFRGRGAPRGGRGG 180

Query: 181 PPRGGGRGGGFR 190
           PPRGGGRGGGFR
Sbjct: 181 PPRGGGRGGGFR 190

[Close]

BLAST of CSPI04G11250 vs. NCBI nr
Match: gi|590643133|ref|XP_007030720.1| (H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Theobroma cacao])

HSP 1 Score: 279.6 bits (714), Expect = 4.3e-72
Identity = 169/191 (88.48%), Postives = 176/191 (92.15%), Query Frame = 1


Query: 1   MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 60
           MRPPRGGGGFRGGRDGGRG  RGGG  GGGR  GRGGGGFRDEGPP+EVVE+STFLHACE
Sbjct: 1   MRPPRGGGGFRGGRDGGRG--RGGGRGGGGRGFGRGGGGFRDEGPPAEVVEISTFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120
           GDAVTKLTNEKIP+FNAPIYLQNKTQIGKVDEIFGPINESYFSIKM+EGIVATSYA GDK
Sbjct: 61  GDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMLEGIVATSYALGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKGQFPSRG-GGRGGGRGGGR-GGRGGGGFRGRGGPRGGRGGP 180
           FYIDP+KLLPLA+FLPQPKGQ  +   GGRGGGRGGGR GGRGGGGFRGRG PRGGRGG 
Sbjct: 121 FYIDPSKLLPLAKFLPQPKGQSQAGARGGRGGGRGGGRGGGRGGGGFRGRGAPRGGRGG- 180

Query: 181 PRGGGRGGGFR 190
           PRGGGRGGGFR
Sbjct: 181 PRGGGRGGGFR 188

[Close]

BLAST of CSPI04G11250 vs. NCBI nr
Match: gi|823153588|ref|XP_012476634.1| (PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Gossypium raimondii])

HSP 1 Score: 278.9 bits (712), Expect = 7.4e-72
Identity = 170/191 (89.01%), Postives = 175/191 (91.62%), Query Frame = 1


Query: 1   MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 60
           MRPPRGGGGFRGGRDGGRG  RGGG  G GR GGRGGGGFRDEGPP+EVVEVSTF+HACE
Sbjct: 1   MRPPRGGGGFRGGRDGGRG--RGGGRGGFGRGGGRGGGGFRDEGPPAEVVEVSTFVHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120
           GDAVTKLTNEKIP+FNA IYLQNKTQIGKVDEIFGPINESYFSIKM+EGIVATSYA GDK
Sbjct: 61  GDAVTKLTNEKIPYFNANIYLQNKTQIGKVDEIFGPINESYFSIKMLEGIVATSYAPGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKGQFPSRG-GGRGGGRGGGR-GGRGGGGFRGRGGPRGGRGGP 180
           FYIDP+KLLPLARFLPQPKGQ    G GGRGGGRGGGR GGRGGGGFRGRG PRGGRGG 
Sbjct: 121 FYIDPSKLLPLARFLPQPKGQAQGGGRGGRGGGRGGGRGGGRGGGGFRGRGAPRGGRGG- 180

Query: 181 PRGGGRGGGFR 190
           PRGGGRGGGFR
Sbjct: 181 PRGGGRGGGFR 188

The following BLAST results are available for this feature:

BLAST of CSPI04G11250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NLAL1_ARATH	4.7e-58	79.59	Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis...	[more]
NLAL2_ARATH	6.7e-49	74.33	H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana...	[more]
GAR1_CHAGB	7.5e-40	58.91	H/ACA ribonucleoprotein complex subunit 1 OS=Chaetomium globosum (strain ATCC 62...	[more]
GAR1_XENTR	3.7e-39	64.18	H/ACA ribonucleoprotein complex subunit 1 OS=Xenopus tropicalis GN=gar1 PE=2 SV=...	[more]
GAR1_NEOFI	2.0e-37	60.62	H/ACA ribonucleoprotein complex subunit 1 OS=Neosartorya fischeri (strain ATCC 1...	[more]

BLAST of CSPI04G11250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWF0_CUCSA	5.5e-90	100.00	H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Cucumis sativus GN=C...	[more]
A0A067L6M8_JATCU	2.1e-73	90.16	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02724 PE=4 SV=1	[more]
I1ML28_SOYBN	2.3e-72	87.50	Uncharacterized protein OS=Glycine max GN=GLYMA_16G041400 PE=4 SV=1	[more]
A0A061F3J0_THECC	3.0e-72	88.48	H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Theobroma cacao GN=T...	[more]
A0A0D2RA46_GOSRA	5.2e-72	89.01	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G244500 PE=4 SV=1	[more]

BLAST of CSPI04G11250 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03920.1	2.6e-59	79.59	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	[more]
AT5G18180.1	3.8e-50	74.33	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	[more]

BLAST of CSPI04G11250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459600\|ref\|XP_004147534.1\|	7.9e-90	100.00	PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cu...	[more]
gi\|802585490\|ref\|XP_012070456.1\|	3.0e-73	90.16	PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Ja...	[more]
gi\|356560951\|ref\|XP_003548749.1\|	3.3e-72	87.50	PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Gl...	[more]
gi\|590643133\|ref\|XP_007030720.1\|	4.3e-72	88.48	H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Theobroma cacao]	[more]
gi\|823153588\|ref\|XP_012476634.1\|	7.4e-72	89.01	PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Go...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007504	H/ACA_rnp_Gar1/Naf1
IPR009000	Transl_B-barrel_sf
IPR021154	H/ACA_rnp_Gar1

Vocabulary: **Biological Process**
Term	Definition
GO:0001522	pseudouridine synthesis
GO:0042254	ribosome biogenesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0031429	box H/ACA snoRNP complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0031429	box H/ACA snoRNP complex
cellular_component	GO:0019013	viral nucleocapsid
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G11250.1	CSPI04G11250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007504	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	PFAM	PF04410	Gar1	coord: 41..140 score: 1.5
IPR009000	Translation protein, beta-barrel domain	unknown	SSF50447	Translation proteins	coord: 50..124 score: 2.19
IPR021154	H/ACA ribonucleoprotein complex, subunit Gar1	PRODOM	PD020235		coord: 51..134 score: 3.0
IPR021154	H/ACA ribonucleoprotein complex, subunit Gar1	PANTHER	PTHR23237	NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1	coord: 1..190 score: 2.3
None	No IPR available	GENE3D	G3DSA:2.40.10.230		coord: 44..125 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G11250	Cla012132	Watermelon (97103) v1	cpiwmB346
CSPI04G11250	Csa4G192120	Cucumber (Chinese Long) v2	cpicuB183
CSPI04G11250	MELO3C008801	Melon (DHL92) v3.5.1	cpimeB323
CSPI04G11250	ClCG04G005310	Watermelon (Charleston Gray)	cpiwcgB317
CSPI04G11250	Lsi01G016660	Bottle gourd (USVL1VR-Ls)	cpilsiB257
CSPI04G11250	MELO3C008801.2	Melon (DHL92) v3.6.1	cpimedB314
CSPI04G11250	CsaV3_4G013280	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G11250	Cla97C04G071870	Watermelon (97103) v2	cpiwmbB309
CSPI04G11250	Cucsa.024070	Cucumber (Gy14) v1	cgycpiB513
CSPI04G11250	CmaCh03G002430	Cucurbita maxima (Rimu)	cmacpiB672
CSPI04G11250	CmaCh07G011670	Cucurbita maxima (Rimu)	cmacpiB877
CSPI04G11250	CmoCh07G012150	Cucurbita moschata (Rifu)	cmocpiB857
CSPI04G11250	CmoCh03G002560	Cucurbita moschata (Rifu)	cmocpiB663
CSPI04G11250	Cp4.1LG10g07090	Cucurbita pepo (Zucchini)	cpecpiB076
CSPI04G11250	Cp4.1LG19g01920	Cucurbita pepo (Zucchini)	cpecpiB498
CSPI04G11250	CsGy4G010810	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G11250	Carg19565	Silver-seed gourd	carcpiB0661
CSPI04G11250	Carg12608	Silver-seed gourd	carcpiB0314

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G11250	Wax gourd	cpiwgoB408