CsaV3_4G011940 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G011940
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4 : 9205808 .. 9206245 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTGGGTTAATTGGAGATTGTTATGGGGAGGAGGCTTTACCCTAATTCTTCTTGTAAGCTTTCATTTTCTCGCCGGCCAAACAGCGGTGGAAAAGGTTGAAATGAAGGAATTCCAACGGTTTCATTTTGGAATGTATCCAAAAAATATTCCTATTCCTCCCTCTGCACCCAGCAACAGAAATTCGGACCATTCTCCTTCTCCTCCGCCGCCCCCGCTGCCATCGGCCCGTTTGTTCCGATGATCAGCAACACTCCCAAACTGCTTGCTTTGGAGGAGCAGTACTCCGATTGTTGGCTTTGCTAGTGAGAGTATTGAGGGTTTTCAATCTATTTTATTTCCATATTTTGCATTTCAAGTGTTTGATTTCTTTTTGTTAGTGTTGCCTTTCGAGGTTGGTGACATGCATGCTCTCATGTTTGTTCAACTTAGGTAG

mRNA sequence

ATGGAGTGGGTTAATTGGAGATTGTTATGGGGAGGAGGCTTTACCCTAATTCTTCTTGTAAGCTTTCATTTTCTCGCCGGCCAAACAGCGGTGGAAAAGCAACAGAAATTCGGACCATTCTCCTTCTCCTCCGCCGCCCCCGCTGCCATCGGCCCGTTTGTTCCGATGATCAGCAACACTCCCAAACTGCTTGCTTTGGAGGAGCAGTACTCCGATTTGTTGCCTTTCGAGGTTGGTGACATGCATGCTCTCATGTTTGTTCAACTTAGGTAG

Coding sequence (CDS)

ATGGAGTGGGTTAATTGGAGATTGTTATGGGGAGGAGGCTTTACCCTAATTCTTCTTGTAAGCTTTCATTTTCTCGCCGGCCAAACAGCGGTGGAAAAGCAACAGAAATTCGGACCATTCTCCTTCTCCTCCGCCGCCCCCGCTGCCATCGGCCCGTTTGTTCCGATGATCAGCAACACTCCCAAACTGCTTGCTTTGGAGGAGCAGTACTCCGATTTGTTGCCTTTCGAGGTTGGTGACATGCATGCTCTCATGTTTGTTCAACTTAGGTAG

Protein sequence

MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEKQQKFGPFSFSSAAPAAIGPFVPMISNTPKLLALEEQYSDLLPFEVGDMHALMFVQLR

Homology

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BLAST of CsaV3_4G011940 vs. NCBI nr
Match: KGN53900.1 (hypothetical protein Csa_4G187300 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 4.2e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEKQQKFGPFSFSSAAPAAIGPFVPMISNT 60
          MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEKQQKFGPFSFSSAAPAAIGPFVPMISNT
Sbjct: 1  MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEKQQKFGPFSFSSAAPAAIGPFVPMISNT 60

Query: 61 PKLLALEEQYSDLLPFEVGDMHALMFVQLR 91
          PKLLALEEQYSDLLPFEVGDMHALMFVQLR
Sbjct: 61 PKLLALEEQYSDLLPFEVGDMHALMFVQLR 90

[Close]

BLAST of CsaV3_4G011940 vs. TrEMBL
Match: tr|A0A0A0KW99|A0A0A0KW99_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G187300 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.8e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEKQQKFGPFSFSSAAPAAIGPFVPMISNT 60
          MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEKQQKFGPFSFSSAAPAAIGPFVPMISNT
Sbjct: 1  MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEKQQKFGPFSFSSAAPAAIGPFVPMISNT 60

Query: 61 PKLLALEEQYSDLLPFEVGDMHALMFVQLR 91
          PKLLALEEQYSDLLPFEVGDMHALMFVQLR
Sbjct: 61 PKLLALEEQYSDLLPFEVGDMHALMFVQLR 90

The following BLAST results are available for this feature:

BLAST of CsaV3_4G011940 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53900.1	4.2e-44	100.00	hypothetical protein Csa_4G187300 [Cucumis sativus]	[more]

BLAST of CsaV3_4G011940 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G011940 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G011940 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KW99\|A0A0A0KW99_CUCSA	2.8e-44	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G187300 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G011940.1	CsaV3_4G011940.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G011940	CSPI04G10870	Wild cucumber (PI 183967)	cpicucB213
CsaV3_4G011940	CsGy4G010460	Cucumber (Gy14) v2	cgybcucB171

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G011940	Wax gourd	cucwgoB415
CsaV3_4G011940	Cucumber (Gy14) v1	cgycucB516
CsaV3_4G011940	Melon (DHL92) v3.5.1	cucmeB328
CsaV3_4G011940	Melon (DHL92) v3.6.1	cucmedB321
CsaV3_4G011940	Watermelon (Charleston Gray)	cucwcgB320
CsaV3_4G011940	Watermelon (97103) v1	cucwmB354
CsaV3_4G011940	Watermelon (97103) v1	cucwmB356
CsaV3_4G011940	Watermelon (97103) v2	cucwmbB309