CsGy4G010460 (gene) Cucumber (Gy14) v2

Overview
NameCsGy4G010460
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr4 : 9527802 .. 9528239 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTGGGTTAATTGGAGATTGTTATGGGGAGGAGGCTTTACCCTAATTCTTCTTGTAAGCTTTCATTTTCTCGCCGGCCAAACAGCGGTGGAAAAGGTTGAAATGAAGGAATTCCAACGGTTTCATTTTGGAATGTATCCAAAAAATATTCCTATTCCTCCCTCTGCACCCAGCAACAGAAATTCGGACCATTCTCCTTCTCCTCCGCCGCCCCCGCTGCCATCGGCCCGTTTGTTCCGATGATCAGCAACACTCCCAAACTGCTTGCTTTGGAGGAGCAGTACTCCGATTGTTGGCTTTGCTAGTGAGAGTATTGAGGGTTTTCAATCTATTTTATTTCCATATTTTGCATTTCAAGTGTTTGATTTCTTTTTGTTAGTGTTGCCTTTCGAGGTTGGTGACATGCATGCTCTCATGTTTGTTCAACTTAGGTAG

mRNA sequence

ATGGAGTGGGTTAATTGGAGATTGTTATGGGGAGGAGGCTTTACCCTAATTCTTCTTGTAAGCTTTCATTTTCTCGCCGGCCAAACAGCGGTGGAAAAGGTTGAAATGAAGGAATTCCAACGGTTTCATTTTGGAATGTATCCAAAAAATATTCCTATTCCTCCCTCTGCACCCAGCAACAGAAATTCGGACCATTCTCCTTCTCCTCCGCCGCCCCCGCTGCCATCGGCCCTGTTGCCTTTCGAGGTTGGTGACATGCATGCTCTCATGTTTGTTCAACTTAGGTAG

Coding sequence (CDS)

ATGGAGTGGGTTAATTGGAGATTGTTATGGGGAGGAGGCTTTACCCTAATTCTTCTTGTAAGCTTTCATTTTCTCGCCGGCCAAACAGCGGTGGAAAAGGTTGAAATGAAGGAATTCCAACGGTTTCATTTTGGAATGTATCCAAAAAATATTCCTATTCCTCCCTCTGCACCCAGCAACAGAAATTCGGACCATTCTCCTTCTCCTCCGCCGCCCCCGCTGCCATCGGCCCTGTTGCCTTTCGAGGTTGGTGACATGCATGCTCTCATGTTTGTTCAACTTAGGTAG

Protein sequence

MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEKVEMKEFQRFHFGMYPKNIPIPPSAPSNRNSDHSPSPPPPPLPSALLPFEVGDMHALMFVQLR
Homology
[Close]
BLAST of CsGy4G010460 vs. NCBI nr
Match: KGN53900.1 (hypothetical protein Csa_4G187300 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 2.1e-17
Identity = 56/95 (58.95%), Postives = 58/95 (61.05%), Query Frame = 0 

Query: 1  MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEKVEMKEFQRFHFGMYPKNIPIPPSAXXX 60
          MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEK   ++F  F F       P        
Sbjct: 1  MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEK--QQKFGPFSFS---SAAPAAIGPFVP 60

Query: 61 XXXXXXXXXXXXXXXSALLPFEVGDMHALMFVQLR 96
                         S LLPFEVGDMHALMFVQLR
Sbjct: 61 MISNTPKLLALEEQYSDLLPFEVGDMHALMFVQLR 90

[Close]
BLAST of CsGy4G010460 vs. TrEMBL
Match: tr|A0A0A0KW99|A0A0A0KW99_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G187300 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-17
Identity = 56/95 (58.95%), Postives = 58/95 (61.05%), Query Frame = 0 

Query: 1  MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEKVEMKEFQRFHFGMYPKNIPIPPSAXXX 60
          MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEK   ++F  F F       P        
Sbjct: 1  MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEK--QQKFGPFSFS---SAAPAAIGPFVP 60

Query: 61 XXXXXXXXXXXXXXXSALLPFEVGDMHALMFVQLR 96
                         S LLPFEVGDMHALMFVQLR
Sbjct: 61 MISNTPKLLALEEQYSDLLPFEVGDMHALMFVQLR 90

The following BLAST results are available for this feature:
BLAST of CsGy4G010460 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53900.12.1e-1758.95hypothetical protein Csa_4G187300 [Cucumis sativus][more]
BLAST of CsGy4G010460 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy4G010460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy4G010460 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KW99|A0A0A0KW99_CUCSA1.4e-1758.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G187300 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G010460.1CsGy4G010460.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..75

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy4G010460Csa4G187300Cucumber (Chinese Long) v2cgybcuB168
CsGy4G010460CSPI04G10870Wild cucumber (PI 183967)cgybcpiB168
CsGy4G010460CsaV3_4G011940Cucumber (Chinese Long) v3cgybcucB171
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy4G010460Melon (DHL92) v3.5.1cgybmeB280
CsGy4G010460Melon (DHL92) v3.6.1cgybmedB280
CsGy4G010460Watermelon (Charleston Gray)cgybwcgB284
CsGy4G010460Watermelon (97103) v1cgybwmB313
CsGy4G010460Watermelon (97103) v1cgybwmB315
CsGy4G010460Watermelon (97103) v2cgybwmbB284
CsGy4G010460Wax gourdcgybwgoB391