CsaV3_4G011940.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G011940.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 9205808 .. 9206245 (-)
Sequence length273
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTGGGTTAATTGGAGATTGTTATGGGGAGGAGGCTTTACCCTAATTCTTCTTGTAAGCTTTCATTTTCTCGCCGGCCAAACAGCGGTGGAAAAGGTTGAAATGAAGGAATTCCAACGGTTTCATTTTGGAATGTATCCAAAAAATATTCCTATTCCTCCCTCTGCACCCAGCAACAGAAATTCGGACCATTCTCCTTCTCCTCCGCCGCCCCCGCTGCCATCGGCCCGTTTGTTCCGATGATCAGCAACACTCCCAAACTGCTTGCTTTGGAGGAGCAGTACTCCGATTGTTGGCTTTGCTAGTGAGAGTATTGAGGGTTTTCAATCTATTTTATTTCCATATTTTGCATTTCAAGTGTTTGATTTCTTTTTGTTAGTGTTGCCTTTCGAGGTTGGTGACATGCATGCTCTCATGTTTGTTCAACTTAGGTAG

mRNA sequence

ATGGAGTGGGTTAATTGGAGATTGTTATGGGGAGGAGGCTTTACCCTAATTCTTCTTGTAAGCTTTCATTTTCTCGCCGGCCAAACAGCGGTGGAAAAGCAACAGAAATTCGGACCATTCTCCTTCTCCTCCGCCGCCCCCGCTGCCATCGGCCCGTTTGTTCCGATGATCAGCAACACTCCCAAACTGCTTGCTTTGGAGGAGCAGTACTCCGATTTGTTGCCTTTCGAGGTTGGTGACATGCATGCTCTCATGTTTGTTCAACTTAGGTAG

Coding sequence (CDS)

ATGGAGTGGGTTAATTGGAGATTGTTATGGGGAGGAGGCTTTACCCTAATTCTTCTTGTAAGCTTTCATTTTCTCGCCGGCCAAACAGCGGTGGAAAAGCAACAGAAATTCGGACCATTCTCCTTCTCCTCCGCCGCCCCCGCTGCCATCGGCCCGTTTGTTCCGATGATCAGCAACACTCCCAAACTGCTTGCTTTGGAGGAGCAGTACTCCGATTTGTTGCCTTTCGAGGTTGGTGACATGCATGCTCTCATGTTTGTTCAACTTAGGTAG

Protein sequence

MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEKQQKFGPFSFSSAAPAAIGPFVPMISNTPKLLALEEQYSDLLPFEVGDMHALMFVQLR
Homology
[Close]
BLAST of CsaV3_4G011940.1 vs. NCBI nr
Match: KGN53900.1 (hypothetical protein Csa_4G187300 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 4.2e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEKQQKFGPFSFSSAAPAAIGPFVPMISNT 60
          MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEKQQKFGPFSFSSAAPAAIGPFVPMISNT
Sbjct: 1  MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEKQQKFGPFSFSSAAPAAIGPFVPMISNT 60

Query: 61 PKLLALEEQYSDLLPFEVGDMHALMFVQLR 91
          PKLLALEEQYSDLLPFEVGDMHALMFVQLR
Sbjct: 61 PKLLALEEQYSDLLPFEVGDMHALMFVQLR 90

[Close]
BLAST of CsaV3_4G011940.1 vs. TrEMBL
Match: tr|A0A0A0KW99|A0A0A0KW99_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G187300 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.8e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEKQQKFGPFSFSSAAPAAIGPFVPMISNT 60
          MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEKQQKFGPFSFSSAAPAAIGPFVPMISNT
Sbjct: 1  MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEKQQKFGPFSFSSAAPAAIGPFVPMISNT 60

Query: 61 PKLLALEEQYSDLLPFEVGDMHALMFVQLR 91
          PKLLALEEQYSDLLPFEVGDMHALMFVQLR
Sbjct: 61 PKLLALEEQYSDLLPFEVGDMHALMFVQLR 90

The following BLAST results are available for this feature:
BLAST of CsaV3_4G011940.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53900.14.2e-44100.00hypothetical protein Csa_4G187300 [Cucumis sativus][more]
BLAST of CsaV3_4G011940.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G011940.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G011940.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KW99|A0A0A0KW99_CUCSA2.8e-44100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G187300 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_4G011940CsaV3_4G011940gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_4G011940.1CsaV3_4G011940.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G011940.1.cds3CsaV3_4G011940.1.cds3CDS
CsaV3_4G011940.1.cds2CsaV3_4G011940.1.cds2CDS
CsaV3_4G011940.1.cds1CsaV3_4G011940.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G011940.1.exon3CsaV3_4G011940.1.exon3exon
CsaV3_4G011940.1.exon2CsaV3_4G011940.1.exon2exon
CsaV3_4G011940.1.exon1CsaV3_4G011940.1.exon1exon