CsaV3_4G005530 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G005530
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptiontRNA-methyltransferase non-catalytic subunit trm6MTase subunit
Locationchr4 : 3677503 .. 3679114 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAATTAATTCTTATTTATAATTTCTTTTCAATATTATGTGATTGTTAACAATAATTCCATATATTTGTTTATAATAGAAAAAAGGATTGGGGGAAATTCCATGTCATTATTATTATTATTATTTACACATTAATAAATAAGATTGTAAAAGCTATACTATTATTTCCACCCCCCCTCCCCCACCTTCATTTCTCTATAAATACCCCCCGATTATCCACGCCGAAGCTTCACTTCTCTCATTTCCCCATTTCTCTCTCTCAAAAATCCACGGAAATGGATTTCTTCTTCTTCGACAAAGCAGAGAAGCTTTCTACTCCCATTCCCCGTTGCAATCTCCTCCAAATCTTCTCCAAGTTCTTCCGTTTTCTAGAACTTTCCTTCCTCCTCCTCTCCCTCTCATGGATCTTCTCTCGCCTTCCCATCGCCCTCAGAATCTCTGCCGAGTATTCCACTAAACTCTTCGCCTTCATCGCCACTCCTCTCTTCGGTTTCCTCCTCTGCAACGCCATCATCGTCGCTCTCGTAGCCAAGCCTTCTCAATTCTCACGCCGCCCCACTTCTGAAACCCATCGGATTTATGAAGACCTCATTGACAAAACCGGAACCGGATCGGACTTAACCGATTCTGCCTCCGAGGAAGTGGAGGAGATTGTGTACCAGGACAAACAGATCATTGCGGAGGGGAGGGTTGGTTCTAATTATTCAACCGATTGTGAAATTGAAGTGAAGAACACGGATCTGGAGTCGGAATCGGGATTGGGTCAGTCGAAAGTGATTCTGAGGAGTTTGTCGGAGAAACTTAACCGAGAATGTGTGAAAACGAAGAGTGAGAAGCTTCGACGATCGGAGACAGAGAAGTGCGGGAATCTGGAGTGTACGAATGACATTTTGTGTTACCAGGATGATTTGAGTAGTGAGGAATTTCAGAGAAAGATTGAGGCGTTTATAGCTAAAGAGAAGAAGTTCCGTCGGGAAGAATCTTCCGCCATTGTGGTACTTCATTGCGACGGTTAATCTCCGGCTGAAAATTAGAGGATTAAAAATTTTAAAAAGAAGAAAGAAGAAGAAGAAGAAGAAATGGGGCGTACTAATTATGTTTGTGTAATGTACAGAGTAAAATTTCCTTTTACCTAGAGAAGGGTAAAATTGGTATTTCAAATTCCTTCTTTTTTTAGATTGAGGATTTTGTTTGTCTGTTACTCGTCCTACTGTTGCTTGCTGGACTTGCATTTCACAATTGATCTCTCGCGTTCGTTTTAGATCAACCATATCACACATTTACCGAAATTGGAAGACAAAAGGATTTAACCAAAATATTCTTTTGTATTTCGAAAATTATTGGTAAATCACAAATTAAAAAAAAAAACAAAAAAAAGTAGAGAAATTCTTATAAACATATGTTAAAGAATTGCCTTTCCATTTTTTTTTAATATAAACACCACAATATTAAATCTTAAATAGGTGGTTATTTCTTTTAAAAATTTAATCACTCTTTATTGCGTGTCTATAATAATTTTTTTTTCTTTTATCAATTATCTTTCATTCCTGTTAGCTAAAGAAATAAACTTATTAAAGATTAATATTTAGAAGGTGATACGATTTTCTCTCAA

mRNA sequence

ATGGATTTCTTCTTCTTCGACAAAGCAGAGAAGCTTTCTACTCCCATTCCCCGTTGCAATCTCCTCCAAATCTTCTCCAAGTTCTTCCGTTTTCTAGAACTTTCCTTCCTCCTCCTCTCCCTCTCATGGATCTTCTCTCGCCTTCCCATCGCCCTCAGAATCTCTGCCGAGTATTCCACTAAACTCTTCGCCTTCATCGCCACTCCTCTCTTCGGTTTCCTCCTCTGCAACGCCATCATCGTCGCTCTCGTAGCCAAGCCTTCTCAATTCTCACGCCGCCCCACTTCTGAAACCCATCGGATTTATGAAGACCTCATTGACAAAACCGGAACCGGATCGGACTTAACCGATTCTGCCTCCGAGGAAGTGGAGGAGATTGTGTACCAGGACAAACAGATCATTGCGGAGGGGAGGGTTGGTTCTAATTATTCAACCGATTGTGAAATTGAAGTGAAGAACACGGATCTGGAGTCGGAATCGGGATTGGGTCAGTCGAAAGTGATTCTGAGGAGTTTGTCGGAGAAACTTAACCGAGAATGTGTGAAAACGAAGAGTGAGAAGCTTCGACGATCGGAGACAGAGAAGTGCGGGAATCTGGAGTGTACGAATGACATTTTGTGTTACCAGGATGATTTGAGTAGTGAGGAATTTCAGAGAAAGATTGAGGCGTTTATAGCTAAAGAGAAGAAGTTCCGTCGGGAAGAATCTTCCGCCATTGTGGTACTTCATTGCGACGGTTAA

Coding sequence (CDS)

ATGGATTTCTTCTTCTTCGACAAAGCAGAGAAGCTTTCTACTCCCATTCCCCGTTGCAATCTCCTCCAAATCTTCTCCAAGTTCTTCCGTTTTCTAGAACTTTCCTTCCTCCTCCTCTCCCTCTCATGGATCTTCTCTCGCCTTCCCATCGCCCTCAGAATCTCTGCCGAGTATTCCACTAAACTCTTCGCCTTCATCGCCACTCCTCTCTTCGGTTTCCTCCTCTGCAACGCCATCATCGTCGCTCTCGTAGCCAAGCCTTCTCAATTCTCACGCCGCCCCACTTCTGAAACCCATCGGATTTATGAAGACCTCATTGACAAAACCGGAACCGGATCGGACTTAACCGATTCTGCCTCCGAGGAAGTGGAGGAGATTGTGTACCAGGACAAACAGATCATTGCGGAGGGGAGGGTTGGTTCTAATTATTCAACCGATTGTGAAATTGAAGTGAAGAACACGGATCTGGAGTCGGAATCGGGATTGGGTCAGTCGAAAGTGATTCTGAGGAGTTTGTCGGAGAAACTTAACCGAGAATGTGTGAAAACGAAGAGTGAGAAGCTTCGACGATCGGAGACAGAGAAGTGCGGGAATCTGGAGTGTACGAATGACATTTTGTGTTACCAGGATGATTTGAGTAGTGAGGAATTTCAGAGAAAGATTGAGGCGTTTATAGCTAAAGAGAAGAAGTTCCGTCGGGAAGAATCTTCCGCCATTGTGGTACTTCATTGCGACGGTTAA

Protein sequence

MDFFFFDKAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISAEYSTKLFAFIATPLFGFLLCNAIIVALVAKPSQFSRRPTSETHRIYEDLIDKTGTGSDLTDSASEEVEEIVYQDKQIIAEGRVGSNYSTDCEIEVKNTDLESESGLGQSKVILRSLSEKLNRECVKTKSEKLRRSETEKCGNLECTNDILCYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVVLHCDG
Homology
[Close]
BLAST of CsaV3_4G005530 vs. NCBI nr
Match: XP_011653156.1 (PREDICTED: uncharacterized protein LOC105435182 [Cucumis sativus] >KGN53297.1 hypothetical protein Csa_4G046600 [Cucumis sativus])

HSP 1 Score: 473.0 bits (1216), Expect = 6.2e-130
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0 

Query: 1   MDFFFFDKAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISAEYST 60
           MDFFFFDKAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISAEYST
Sbjct: 1   MDFFFFDKAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISAEYST 60

Query: 61  KLFAFIATPLFGFLLCNAIIVALVAKPSQFSRRPTSETHRIYEDLIDKTGTGSDLTDSAS 120
           KLFAFIATPLFGFLLCNAIIVALVAKPSQFSRRPTSETHRIYEDLIDKTGTGSDLTDSAS
Sbjct: 61  KLFAFIATPLFGFLLCNAIIVALVAKPSQFSRRPTSETHRIYEDLIDKTGTGSDLTDSAS 120

Query: 121 EEVEEIVYQDKQIIAEGRVGSNYSTDCEIEVKNTDLESESGLGQSKVILRSLSEKLNREC 180
           EEVEEIVYQDKQIIAEGRVGSNYSTDCEIEVKNTDLESESGLGQSKVILRSLSEKLNREC
Sbjct: 121 EEVEEIVYQDKQIIAEGRVGSNYSTDCEIEVKNTDLESESGLGQSKVILRSLSEKLNREC 180

Query: 181 VKTKSEKLRRSETEKCGNLECTNDILCYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIV 240
           VKTKSEKLRRSETEKCGNLECTNDILCYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIV
Sbjct: 181 VKTKSEKLRRSETEKCGNLECTNDILCYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIV 240

Query: 241 VLHCDG 247
           VLHCDG
Sbjct: 241 VLHCDG 246

[Close]
BLAST of CsaV3_4G005530 vs. NCBI nr
Match: XP_008452094.1 (PREDICTED: uncharacterized protein LOC103493205 [Cucumis melo])

HSP 1 Score: 433.0 bits (1112), Expect = 7.1e-118
Identity = 230/247 (93.12%), Postives = 238/247 (96.36%), Query Frame = 0 

Query: 1   MDFFFFDKAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISAEYST 60
           MDFFFFDKAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISA+Y T
Sbjct: 1   MDFFFFDKAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISADYFT 60

Query: 61  KLFAFIATPLFGFLLCNAIIVALVAKPSQFSRRPTS-ETHRIYEDLIDKTGTGSDLTDSA 120
           KLFAFIATPLFGFLLCNAIIVALVAKPSQFSR  TS +T RIYEDLI+KTGTGSDLTDSA
Sbjct: 61  KLFAFIATPLFGFLLCNAIIVALVAKPSQFSRPATSDQTDRIYEDLIEKTGTGSDLTDSA 120

Query: 121 SEEVEEIVYQDKQIIAEGRVGSNYSTDCEIEVKNTDLESESGLGQSKVILRSLSEKLNRE 180
           SEEVEEIVYQDK+IIAEGRVGSNYSTDCEIE+KNTDLES+SGLG SKVILRSLSEKLNRE
Sbjct: 121 SEEVEEIVYQDKEIIAEGRVGSNYSTDCEIELKNTDLESDSGLGHSKVILRSLSEKLNRE 180

Query: 181 CVKTKSEKLRRSETEKCGNLECTNDILCYQDDLSSEEFQRKIEAFIAKEKKFRREESSAI 240
           CVKT+SEKLRRSETEKC NLE +NDIL YQDDLSSEEFQRKIEAFIAKEKKFRREESSAI
Sbjct: 181 CVKTQSEKLRRSETEKCRNLEYSNDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAI 240

Query: 241 VVLHCDG 247
           VVLHCDG
Sbjct: 241 VVLHCDG 247

[Close]
BLAST of CsaV3_4G005530 vs. NCBI nr
Match: XP_022136879.1 (uncharacterized protein LOC111008461, partial [Momordica charantia])

HSP 1 Score: 294.3 bits (752), Expect = 3.9e-76
Identity = 176/253 (69.57%), Postives = 202/253 (79.84%), Query Frame = 0 

Query: 1   MDFFFFDKAEKLSTPIPR--CNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISAEY 60
           MDFFFFDKAEK  T IPR  CNLLQIF+K FRFLEL  LL+ LSWI SRLP A+RIS EY
Sbjct: 1   MDFFFFDKAEKPPTAIPRSSCNLLQIFAKVFRFLELCLLLVFLSWILSRLPFAVRISGEY 60

Query: 61  STKLFAFIATPLFGFLLCNAIIVALVAKPSQFSRRPTS-----ETHRIYEDLIDKTGTGS 120
            TKLFAF+A+PLFGF+LCNAIIVALVAKPSQ S R  +     ET R+YEDLI K+G G 
Sbjct: 61  FTKLFAFVASPLFGFILCNAIIVALVAKPSQLSGRRVAVGDGGETDRLYEDLIVKSGNG- 120

Query: 121 DLTDSASEEVEEIVYQDKQIIAEGRVGSNYSTDCEIEVKNTDLESESGLGQSKVILRSLS 180
           DL +S SE+  EIV+QDK+IIAE    +  S D ++EVK+TD E+ESG+   KVI R+LS
Sbjct: 121 DLPESPSED-GEIVFQDKEIIAE----AINSIDRDVEVKSTDPEAESGIDHPKVIRRTLS 180

Query: 181 EKLNRECVKTKSEKLRRSETEKCGN-LECTNDILCYQDDLSSEEFQRKIEAFIAKEKKFR 240
           EK+ REC KT+SEKLRRSETEKC N LE ++DI+ YQDDLSSEEFQRKIEAFIA+EKKFR
Sbjct: 181 EKIKRECSKTQSEKLRRSETEKCRNILEQSHDIVYYQDDLSSEEFQRKIEAFIAREKKFR 240

Query: 241 REESSAIVVLHCD 246
           REESSAI VLH D
Sbjct: 241 REESSAI-VLHSD 246

[Close]
BLAST of CsaV3_4G005530 vs. NCBI nr
Match: XP_023552883.1 (uncharacterized protein LOC111810408 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.0 bits (728), Expect = 2.4e-73
Identity = 167/252 (66.27%), Postives = 194/252 (76.98%), Query Frame = 0 

Query: 1   MDFFFFDKAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISAEYST 60
           MDFFFFDKAEK+S+ +PRCNLLQ+F+KFFRF+E  FLL+ LSW FSRLPIA+RIS+EY  
Sbjct: 1   MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRFIEFCFLLVFLSWTFSRLPIAVRISSEYFG 60

Query: 61  KLFAFIATPLFGFLLCNAIIVALVAKPSQFSRRPTSETHRIYEDLIDKTGTGSDLTDSAS 120
           KL  FIA+PLFGFLLCNAIIVALVAKPSQFS   ++ET RIYE+LI+K+G+  DL DS +
Sbjct: 61  KLLGFIASPLFGFLLCNAIIVALVAKPSQFSGY-SAETERIYENLIEKSGS-RDLPDSLA 120

Query: 121 E------EVEEIVYQDKQIIAEGRVGSNYSTDCEIEVKNTDLESESGLGQSKVILRSLSE 180
           E      E  EIVYQDKQII                     +ESES +   KVILRSLSE
Sbjct: 121 ERDSSIAEEVEIVYQDKQII---------------------VESESVVDHPKVILRSLSE 180

Query: 181 KLNRECVKTKSEKLRRSETEKCGNLECTNDILCYQDDLSSEEFQRKIEAFIAKEKKFRRE 240
           KL RECV T+SEKLRRSETEKC NLE ++DIL +Q+DLS+E+FQ+KIEAFIAKEKKFRRE
Sbjct: 181 KLTRECVTTQSEKLRRSETEKCRNLEHSHDILFFQEDLSNEDFQKKIEAFIAKEKKFRRE 228

Query: 241 ESSAIVVLHCDG 247
           ES AI VL CDG
Sbjct: 241 ESCAI-VLRCDG 228

[Close]
BLAST of CsaV3_4G005530 vs. NCBI nr
Match: XP_022929278.1 (uncharacterized protein LOC111435910 [Cucurbita moschata])

HSP 1 Score: 282.3 bits (721), Expect = 1.5e-72
Identity = 166/252 (65.87%), Postives = 192/252 (76.19%), Query Frame = 0 

Query: 1   MDFFFFDKAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISAEYST 60
           MDFFFFDKAEK+S+ +PRCNLLQ+F+KFFR +E  FLL+ LSW  SRLPIA+RIS+EY  
Sbjct: 1   MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRLIEFCFLLVFLSWTLSRLPIAVRISSEYFG 60

Query: 61  KLFAFIATPLFGFLLCNAIIVALVAKPSQFSRRPTSETHRIYEDLIDKTGTGSDLTDSAS 120
           KL  FIA+PLFGFLLCNAIIVALVAKPSQFS   ++ET RIYE+LI+K+G+  DL DS +
Sbjct: 61  KLLGFIASPLFGFLLCNAIIVALVAKPSQFSGH-SAETERIYENLIEKSGS-RDLPDSLA 120

Query: 121 E------EVEEIVYQDKQIIAEGRVGSNYSTDCEIEVKNTDLESESGLGQSKVILRSLSE 180
           E      E  EIVYQDKQII                     +ESES +   KVILRSLSE
Sbjct: 121 ERDSSIAEEVEIVYQDKQII---------------------VESESVVDHPKVILRSLSE 180

Query: 181 KLNRECVKTKSEKLRRSETEKCGNLECTNDILCYQDDLSSEEFQRKIEAFIAKEKKFRRE 240
           KL RECV T+SEKLRRSETEKC NLE ++DIL +Q+DLS+EEFQ+KIEAFIAKEKKFRRE
Sbjct: 181 KLTRECVTTQSEKLRRSETEKCRNLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRRE 228

Query: 241 ESSAIVVLHCDG 247
           ES AI VL CDG
Sbjct: 241 ESCAI-VLRCDG 228

[Close]
BLAST of CsaV3_4G005530 vs. TAIR10
Match: AT5G66440.1 (unknown protein)

HSP 1 Score: 98.6 bits (244), Expect = 5.7e-21
Identity = 89/253 (35.18%), Postives = 129/253 (50.99%), Query Frame = 0 

Query: 1   MDFFFFD--KAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISAEY 60
           MD F FD  KAEK +  + R N      +FFR  E+   LL + W FS+LP  ++IS  +
Sbjct: 1   MDSFDFDNVKAEK-AKALRRFNRFCRIGRFFRAAEVCVALLFIFWTFSQLPFVVQISGAF 60

Query: 61  STKLFAFIATPLFGFLLCNAIIVALVAKPSQFSRRPTSETH-RIYEDLIDKTGTGSDLTD 120
             ++ A I+TPLF FLL N+I                +     IY+  +      S  +D
Sbjct: 61  LRRIAAVISTPLFVFLLGNSIXXXXXXXXXXXXXXXVASAETEIYQAFVRSVENRSKPSD 120

Query: 121 SASEEVEEIVYQDKQIIAEGRVGSNYSTDCEIEVKNTDLESESGLGQSKVILRSLSEKLN 180
              +  E IVY DKQ+I    + SN +   +  + + +++S+S    SKV  RS S+   
Sbjct: 121 --EDLTEGIVYDDKQVIVTD-LDSNPNLTVDENMPHVEIDSDSS-PHSKVYGRSKSDVSG 180

Query: 181 RE----CVKTKSEKLRRSETEK-CGNLECTNDILCY----QDDLSSEEFQRKIEAFIAKE 240
           ++     +      L+RSETEK C   E            +DDLS+EEFQ+ IEAFIAK+
Sbjct: 181 KQSSNMVMMMMKRSLQRSETEKFCKETEXXXXXXXXXNYPEDDLSNEEFQKTIEAFIAKQ 240

Query: 241 KKFRREESSAIVV 242
           + FRR+ES A+VV
Sbjct: 241 RMFRRQESLAVVV 248

[Close]
BLAST of CsaV3_4G005530 vs. TAIR10
Match: AT4G34560.1 (unknown protein)

HSP 1 Score: 54.7 bits (130), Expect = 9.5e-08
Identity = 66/245 (26.94%), Postives = 115/245 (46.94%), Query Frame = 0 

Query: 8   KAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISAEYSTKLFAFIA 67
           K EK S  I     ++ F+  FR  EL  L++ +S +    P +++IS +   +   F+ 
Sbjct: 10  KMEK-SRGILNFQAIRSFTSLFRLFELLLLVILISKL--SFP-SVKISGDIFKEAAVFLV 69

Query: 68  TPLFGFLLCNAIIVALVAKPSQF--SRRPT-----SETHRIYEDLIDKTGTGSDLTDSAS 127
           +P F F + NAI++ L+AK  ++  S  P+     + ++ +Y++ + K           S
Sbjct: 70  SPRFVFFIGNAIVITLLAKSGRYSSSHEPSKTATEAASNDLYQEFLHK-----------S 129

Query: 128 EEVEEIVY-----QDKQIIAEGRVGSNYSTDCEIEVKNTDLESESGLGQSKVILRSLSEK 187
           E+ + +VY     Q K+     RV    S   +       LES +G    K + R +SEK
Sbjct: 130 EKKKPVVYATKTEQLKKPSGGKRVSFGRSQSHKAFEAVKPLESTNG---EKNMKRYVSEK 189

Query: 188 LNRECVKTKSEKLRRSETEKCGNLECTNDILCYQDDLSSEEFQRKIEAFIAKEKKFRREE 241
             R C   K   +R  + E               D +S+E+F+ KIEAFIA++K+ +++E
Sbjct: 190 HMRVCDSDKKVVVRVKKPE---------------DGMSNEQFRTKIEAFIARQKRIQKDE 221

[Close]
BLAST of CsaV3_4G005530 vs. TrEMBL
Match: tr|A0A0A0KY10|A0A0A0KY10_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G046600 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 4.1e-130
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0 

Query: 1   MDFFFFDKAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISAEYST 60
           MDFFFFDKAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISAEYST
Sbjct: 1   MDFFFFDKAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISAEYST 60

Query: 61  KLFAFIATPLFGFLLCNAIIVALVAKPSQFSRRPTSETHRIYEDLIDKTGTGSDLTDSAS 120
           KLFAFIATPLFGFLLCNAIIVALVAKPSQFSRRPTSETHRIYEDLIDKTGTGSDLTDSAS
Sbjct: 61  KLFAFIATPLFGFLLCNAIIVALVAKPSQFSRRPTSETHRIYEDLIDKTGTGSDLTDSAS 120

Query: 121 EEVEEIVYQDKQIIAEGRVGSNYSTDCEIEVKNTDLESESGLGQSKVILRSLSEKLNREC 180
           EEVEEIVYQDKQIIAEGRVGSNYSTDCEIEVKNTDLESESGLGQSKVILRSLSEKLNREC
Sbjct: 121 EEVEEIVYQDKQIIAEGRVGSNYSTDCEIEVKNTDLESESGLGQSKVILRSLSEKLNREC 180

Query: 181 VKTKSEKLRRSETEKCGNLECTNDILCYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIV 240
           VKTKSEKLRRSETEKCGNLECTNDILCYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIV
Sbjct: 181 VKTKSEKLRRSETEKCGNLECTNDILCYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIV 240

Query: 241 VLHCDG 247
           VLHCDG
Sbjct: 241 VLHCDG 246

[Close]
BLAST of CsaV3_4G005530 vs. TrEMBL
Match: tr|A0A1S3BT40|A0A1S3BT40_CUCME (uncharacterized protein LOC103493205 OS=Cucumis melo OX=3656 GN=LOC103493205 PE=4 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 4.7e-118
Identity = 230/247 (93.12%), Postives = 238/247 (96.36%), Query Frame = 0 

Query: 1   MDFFFFDKAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISAEYST 60
           MDFFFFDKAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISA+Y T
Sbjct: 1   MDFFFFDKAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISADYFT 60

Query: 61  KLFAFIATPLFGFLLCNAIIVALVAKPSQFSRRPTS-ETHRIYEDLIDKTGTGSDLTDSA 120
           KLFAFIATPLFGFLLCNAIIVALVAKPSQFSR  TS +T RIYEDLI+KTGTGSDLTDSA
Sbjct: 61  KLFAFIATPLFGFLLCNAIIVALVAKPSQFSRPATSDQTDRIYEDLIEKTGTGSDLTDSA 120

Query: 121 SEEVEEIVYQDKQIIAEGRVGSNYSTDCEIEVKNTDLESESGLGQSKVILRSLSEKLNRE 180
           SEEVEEIVYQDK+IIAEGRVGSNYSTDCEIE+KNTDLES+SGLG SKVILRSLSEKLNRE
Sbjct: 121 SEEVEEIVYQDKEIIAEGRVGSNYSTDCEIELKNTDLESDSGLGHSKVILRSLSEKLNRE 180

Query: 181 CVKTKSEKLRRSETEKCGNLECTNDILCYQDDLSSEEFQRKIEAFIAKEKKFRREESSAI 240
           CVKT+SEKLRRSETEKC NLE +NDIL YQDDLSSEEFQRKIEAFIAKEKKFRREESSAI
Sbjct: 181 CVKTQSEKLRRSETEKCRNLEYSNDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAI 240

Query: 241 VVLHCDG 247
           VVLHCDG
Sbjct: 241 VVLHCDG 247

[Close]
BLAST of CsaV3_4G005530 vs. TrEMBL
Match: tr|A0A1U8JIP9|A0A1U8JIP9_GOSHI (uncharacterized protein LOC107905914 OS=Gossypium hirsutum OX=3635 GN=LOC107905914 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.3e-32
Identity = 106/244 (43.44%), Postives = 150/244 (61.48%), Query Frame = 0 

Query: 1   MDFFFFD--KAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISAEY 60
           MD F+F   K EK+   + + N LQ  +K FR  E+   LL L+W   R+P A++IS E+
Sbjct: 1   MDSFYFHNVKTEKVKA-MKKYNRLQSIAKVFRIFEVLSALLFLAWTAERVPFAIKISGEF 60

Query: 61  STKLFAFIATPLFGFLLCNAIIVALVAKPSQFSRRPTSETHRIYEDLIDKTGTGSDLTDS 120
             KL   IA+P F FL+CN II+ L+AK   FS    +++ ++ E++I KT      T S
Sbjct: 61  VLKLGGIIASPFFVFLICNLIIITLIAKSGIFSALRNADS-KVCEEIIIKTAD----THS 120

Query: 121 ASEEVEEIVYQDKQIIAEGRVGSNYSTDCEIEVKNTDLESESGLGQSKVILRSLSEKLNR 180
            S   EEIVYQDK+II+E    +    + E E++  + +S+      +V  RS SEKL R
Sbjct: 121 KSVSQEEIVYQDKEIISEVNTSTRECENMEPELE-PESDSDFEADNRRVYRRSKSEKLER 180

Query: 181 ECVKTKSEKLRRSETE-KCGNLECTNDILCYQDDLSSEEFQRKIEAFIAKEKKFRREESS 240
           E VK   ++LRRSE+E KC  +E  ++ L  +DDLS+EEFQR IE FIAK+ +FRREES 
Sbjct: 181 EKVK---KELRRSESEKKCQKIENMDEKLFPEDDLSNEEFQRAIEDFIAKQLRFRREESL 234

Query: 241 AIVV 242
           +IV+
Sbjct: 241 SIVL 234

[Close]
BLAST of CsaV3_4G005530 vs. TrEMBL
Match: tr|A0A2P5Y3F5|A0A2P5Y3F5_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA10511 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 7.4e-31
Identity = 102/243 (41.98%), Postives = 143/243 (58.85%), Query Frame = 0 

Query: 1   MDFFFFD--KAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISAEY 60
           MD F+F   K EK+   + + N LQ  +K FR  E+   LL L+W   R+P A++IS E+
Sbjct: 1   MDSFYFHNVKTEKVKA-MKKYNRLQSIAKVFRIFEVLSALLFLAWTAERVPFAIKISGEF 60

Query: 61  STKLFAFIATPLFGFLLCNAIIVALVAKPSQFSRRPTSETHRIYEDLIDKTGTGSDLTDS 120
             KL   IA+P F FL+CN II+ L+AK   FS    +++ ++ E++I KT      T S
Sbjct: 61  VLKLGGIIASPFFVFLICNLIIITLIAKSGIFSALRNADS-KVCEEIIIKTAD----THS 120

Query: 121 ASEEVEEIVYQDKQIIAEGRVGSNYSTDCEIEVKNTDLESESGLGQSKVILRSLSEKLNR 180
            S   EEIVYQDK+II+E    +    D E E++  + +S+      +V  RS SEKL R
Sbjct: 121 KSVSQEEIVYQDKEIISEVNTSTRKCEDMEPELE-PESDSDFEADNPRVYRRSKSEKLER 180

Query: 181 ECVKTKSEKLRRSETEKCGNLECTNDILCYQDDLSSEEFQRKIEAFIAKEKKFRREESSA 240
           E  K K E       +KC  +E  ++ L  +DDLS+EEFQR IE FIAK+ +FRREES +
Sbjct: 181 E--KVKKELXXXXXXKKCRKIENMDEKLFPEDDLSNEEFQRAIEDFIAKQLRFRREESLS 234

Query: 241 IVV 242
           IV+
Sbjct: 241 IVL 234

[Close]
BLAST of CsaV3_4G005530 vs. TrEMBL
Match: tr|A5BEA3|A5BEA3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0023g02160 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.4e-29
Identity = 111/256 (43.36%), Postives = 150/256 (58.59%), Query Frame = 0 

Query: 1   MDFFFFD--KAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISAEY 60
           MD F FD  KAEK +  + +   L+  +K FRF EL  +L+   WIF+ LP A++IS EY
Sbjct: 1   MDSFDFDSVKAEKANAML-KYRRLRNVTKLFRFAELFLVLILFFWIFTHLPFAIQISGEY 60

Query: 61  STKLFAFIATPLFGFLLCNAIIVALVAKPSQFSRR----PTSETHRIYEDLIDKTGT--- 120
             K+   IA+ LF FL CNAIIV L+ K SQFS R      +ET  IYE+ + K+     
Sbjct: 61  FRKISTVIASHLFVFLFCNAIIVILLFKSSQFSDRNLPVHNAETD-IYEEFVKKSENNRP 120

Query: 121 GSDLTD-SASEEVEEIVYQDKQIIAEGRVGSNYSTDCEIEVKN-TDLESESGLGQSKVIL 180
            S   D S S+E E +VY+DKQ+I      +     CE  V   TD + +S +   KV  
Sbjct: 121 NSQSEDLSLSQEPEVVVYEDKQMIC---AANTLRPTCEKVVPTVTDSKRDSYV---KVYR 180

Query: 181 RSLSEKLNRECVKTKSEKLRRSETEKCGNLECTND----ILCYQDDLSSEEFQRKIEAFI 240
           RS SEKLNR+  +     L+RS+TEKC  +  + D        +D+LS+E+FQR IEAFI
Sbjct: 181 RSQSEKLNRDRSEKSRRILQRSDTEKCQQIVISGDDPAKTWYPEDELSNEDFQRTIEAFI 240

Query: 241 AKEKKFRREESSAIVV 242
           A+E +FRR+ES AIV+
Sbjct: 241 ARELRFRRQESLAIVL 248

The following BLAST results are available for this feature:
BLAST of CsaV3_4G005530 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011653156.16.2e-130100.00PREDICTED: uncharacterized protein LOC105435182 [Cucumis sativus] >KGN53297.1 hy... [more]
XP_008452094.17.1e-11893.12PREDICTED: uncharacterized protein LOC103493205 [Cucumis melo][more]
XP_022136879.13.9e-7669.57uncharacterized protein LOC111008461, partial [Momordica charantia][more]
XP_023552883.12.4e-7366.27uncharacterized protein LOC111810408 [Cucurbita pepo subsp. pepo][more]
XP_022929278.11.5e-7265.87uncharacterized protein LOC111435910 [Cucurbita moschata][more]
BLAST of CsaV3_4G005530 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G66440.15.7e-2135.18unknown protein[more]
AT4G34560.19.5e-0826.94unknown protein[more]
BLAST of CsaV3_4G005530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G005530 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KY10|A0A0A0KY10_CUCSA4.1e-130100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G046600 PE=4 SV=1[more]
tr|A0A1S3BT40|A0A1S3BT40_CUCME4.7e-11893.12uncharacterized protein LOC103493205 OS=Cucumis melo OX=3656 GN=LOC103493205 PE=... [more]
tr|A0A1U8JIP9|A0A1U8JIP9_GOSHI2.3e-3243.44uncharacterized protein LOC107905914 OS=Gossypium hirsutum OX=3635 GN=LOC1079059... [more]
tr|A0A2P5Y3F5|A0A2P5Y3F5_GOSBA7.4e-3141.98Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA10511 PE=4 SV... [more]
tr|A5BEA3|A5BEA3_VITVI1.4e-2943.36Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0023g02160 PE=4 SV=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G005530.1CsaV3_4G005530.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33640:SF1SUBFAMILY NOT NAMEDcoord: 1..241
NoneNo IPR availablePANTHERPTHR33640FAMILY NOT NAMEDcoord: 1..241

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G005530CSPI06G31180Wild cucumber (PI 183967)cpicucB352
CsaV3_4G005530CSPI04G05380Wild cucumber (PI 183967)cpicucB213
CsaV3_4G005530Cucsa.106440Cucumber (Gy14) v1cgycucB134
CsaV3_4G005530CmaCh16G006280Cucurbita maxima (Rimu)cmacucB0393
CsaV3_4G005530CmaCh04G007620Cucurbita maxima (Rimu)cmacucB0847
CsaV3_4G005530CmoCh16G006840Cucurbita moschata (Rifu)cmocucB0388
CsaV3_4G005530CmoCh04G008110Cucurbita moschata (Rifu)cmocucB0833
CsaV3_4G005530CmoCh03G007600Cucurbita moschata (Rifu)cmocucB0779
CsaV3_4G005530Cp4.1LG14g01730Cucurbita pepo (Zucchini)cpecucB0266
CsaV3_4G005530Cp4.1LG01g06930Cucurbita pepo (Zucchini)cpecucB0497
CsaV3_4G005530Cp4.1LG10g00630Cucurbita pepo (Zucchini)cpecucB0089
CsaV3_4G005530CsGy4G005280Cucumber (Gy14) v2cgybcucB171
CsaV3_4G005530Carg00627Silver-seed gourdcarcucB0440
CsaV3_4G005530Carg14159Silver-seed gourdcarcucB0982
CsaV3_4G005530Carg05749Silver-seed gourdcarcucB1063
CsaV3_4G005530Cla014230Watermelon (97103) v1cucwmB344
CsaV3_4G005530Cla014578Watermelon (97103) v1cucwmB322
CsaV3_4G005530MELO3C016396Melon (DHL92) v3.5.1cucmeB315
CsaV3_4G005530MELO3C007844Melon (DHL92) v3.5.1cucmeB342
CsaV3_4G005530MELO3C023313Melon (DHL92) v3.5.1cucmeB273
CsaV3_4G005530ClCG01G019770Watermelon (Charleston Gray)cucwcgB300
CsaV3_4G005530ClCG07G008620Watermelon (Charleston Gray)cucwcgB344
CsaV3_4G005530Lsi07G002470Bottle gourd (USVL1VR-Ls)cuclsiB322
CsaV3_4G005530Lsi01G006610Bottle gourd (USVL1VR-Ls)cuclsiB276
CsaV3_4G005530MELO3C007844.2Melon (DHL92) v3.6.1cucmedB336
CsaV3_4G005530MELO3C016396.2Melon (DHL92) v3.6.1cucmedB307
CsaV3_4G005530Cla97C07G135660Watermelon (97103) v2cucwmbB330
CsaV3_4G005530Bhi01G001859Wax gourdcucwgoB381
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_4G005530CsaV3_2G014930Cucumber (Chinese Long) v3cuccucB083
The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G005530Cucumber (Chinese Long) v3cuccucB118
CsaV3_4G005530Cucumber (Chinese Long) v3cuccucB181
CsaV3_4G005530Cucumber (Gy14) v2cgybcucB287
CsaV3_4G005530Cucurbita maxima (Rimu)cmacucB0796
CsaV3_4G005530Watermelon (97103) v2cucwmbB271
CsaV3_4G005530Watermelon (97103) v2cucwmbB316
CsaV3_4G005530Wax gourdcucwgoB433