CmoCh04G008110 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G008110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transmembrane protein, putative
Location	Cmo_Chr04 : 4052111 .. 4052809 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGTTCTTCTTCCACAAAACAGAGAAAGTTTTGAGCCCTAATCTCCTCCAAATATTCCCCAAGTTCTTCCGATTCCTAGAGCTCTGCTTCCTGCTCCTTTTCCTCTCCTGGATCCTCTCTCGGCTCCCGATCGCCCTCACAATCTCCGCCGACTTCTTCCGAAAACTCTTCGGCTTCCTCGCCAGTCCGCTCTTCGGATTCCTCCTCTGTAACGCCATTATCTTCGCACTACTTACCAAACCTACCAAATTTTCAGACCGCAGCGCCGTAACCGTCGTCGATGGAGACGAAATCGATCGGATTTACGCAGACCTAATCGAAAAATCTGGAAGCGACGGCGTGCATGAACGCAAGGTGGAGACTGTGTACAAGGACAAACAGATCATCGCGGAGCCGATTAGTTCAATCGATCACAAAATTGAAGAGAGGAACGCGGATACGGAGTCCGAATCTGGAGTAGATCATCCGAAAGTGATATTGAGGACGCTATCAGAGAAACTTAAGCCGAAAACGCAGAGTGAGAAGCTCCGCCGTTCAGAGACGGAGAAGTGCCGGAATCTGGAGCATTCGCACGACATTTTGTACTACCAGGACGATTTGAGCAGCGAGGAATTTCAAAGGAAGATTGAGGCGTTCATAGCGAAAGAGAAGAAGTTTCGACGGGAAGAATCTTCCGCCATTGTACTCCACTGA

mRNA sequence

ATGGATTTGTTCTTCTTCCACAAAACAGAGAAAGTTTTGAGCCCTAATCTCCTCCAAATATTCCCCAAGTTCTTCCGATTCCTAGAGCTCTGCTTCCTGCTCCTTTTCCTCTCCTGGATCCTCTCTCGGCTCCCGATCGCCCTCACAATCTCCGCCGACTTCTTCCGAAAACTCTTCGGCTTCCTCGCCAGTCCGCTCTTCGGATTCCTCCTCTGTAACGCCATTATCTTCGCACTACTTACCAAACCTACCAAATTTTCAGACCGCAGCGCCGTAACCGTCGTCGATGGAGACGAAATCGATCGGATTTACGCAGACCTAATCGAAAAATCTGGAAGCGACGGCGTGCATGAACGCAAGGTGGAGACTGTGTACAAGGACAAACAGATCATCGCGGAGCCGATTAGTTCAATCGATCACAAAATTGAAGAGAGGAACGCGGATACGGAGTCCGAATCTGGAGTAGATCATCCGAAAGTGATATTGAGGACGCTATCAGAGAAACTTAAGCCGAAAACGCAGAGTGAGAAGCTCCGCCGTTCAGAGACGGAGAAGTGCCGGAATCTGGAGCATTCGCACGACATTTTGTACTACCAGGACGATTTGAGCAGCGAGGAATTTCAAAGGAAGATTGAGGCGTTCATAGCGAAAGAGAAGAAGTTTCGACGGGAAGAATCTTCCGCCATTGTACTCCACTGA

Coding sequence (CDS)

ATGGATTTGTTCTTCTTCCACAAAACAGAGAAAGTTTTGAGCCCTAATCTCCTCCAAATATTCCCCAAGTTCTTCCGATTCCTAGAGCTCTGCTTCCTGCTCCTTTTCCTCTCCTGGATCCTCTCTCGGCTCCCGATCGCCCTCACAATCTCCGCCGACTTCTTCCGAAAACTCTTCGGCTTCCTCGCCAGTCCGCTCTTCGGATTCCTCCTCTGTAACGCCATTATCTTCGCACTACTTACCAAACCTACCAAATTTTCAGACCGCAGCGCCGTAACCGTCGTCGATGGAGACGAAATCGATCGGATTTACGCAGACCTAATCGAAAAATCTGGAAGCGACGGCGTGCATGAACGCAAGGTGGAGACTGTGTACAAGGACAAACAGATCATCGCGGAGCCGATTAGTTCAATCGATCACAAAATTGAAGAGAGGAACGCGGATACGGAGTCCGAATCTGGAGTAGATCATCCGAAAGTGATATTGAGGACGCTATCAGAGAAACTTAAGCCGAAAACGCAGAGTGAGAAGCTCCGCCGTTCAGAGACGGAGAAGTGCCGGAATCTGGAGCATTCGCACGACATTTTGTACTACCAGGACGATTTGAGCAGCGAGGAATTTCAAAGGAAGATTGAGGCGTTCATAGCGAAAGAGAAGAAGTTTCGACGGGAAGAATCTTCCGCCATTGTACTCCACTGA

Homology

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BLAST of CmoCh04G008110 vs. TrEMBL
Match: A0A0A0KY10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046600 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 6.8e-65
Identity = 160/247 (64.78%), Postives = 181/247 (73.28%), Query Frame = 1


Query: 1   MDLFFFHKTEKVLSP----NLLQIFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFR 60
           MD FFF K EK+ +P    NLLQIF KFFRFLEL FLLL LSWI SRLPIAL ISA++  
Sbjct: 1   MDFFFFDKAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISAEYST 60

Query: 61  KLFGFLASPLFGFLLCNAIIFALLTKPTKFSDRSAVTVVDGDEIDRIYADLIEKSG---- 120
           KLF F+A+PLFGFLLCNAII AL+ KP++FS R         E  RIY DLI+K+G    
Sbjct: 61  KLFAFIATPLFGFLLCNAIIVALVAKPSQFSRRPT------SETHRIYEDLIDKTGTGSD 120

Query: 121 -SDGVHERKVETVYKDKQIIAE----PISSIDHKIEERNADTESESGVDHPKVILRTLSE 180
            +D   E   E VY+DKQIIAE       S D +IE +N D ESESG+   KVILR+LSE
Sbjct: 121 LTDSASEEVEEIVYQDKQIIAEGRVGSNYSTDCEIEVKNTDLESESGLGQSKVILRSLSE 180

Query: 181 KLK---PKTQSEKLRRSETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRRE 232
           KL     KT+SEKLRRSETEKC NLE ++DIL YQDDLSSEEFQRKIEAFIAKEKKFRRE
Sbjct: 181 KLNRECVKTKSEKLRRSETEKCGNLECTNDILCYQDDLSSEEFQRKIEAFIAKEKKFRRE 240

[Close]

BLAST of CmoCh04G008110 vs. TrEMBL
Match: A0A0D2SGW9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G201500 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.6e-32
Identity = 104/242 (42.98%), Postives = 149/242 (61.57%), Query Frame = 1


Query: 1   MDLFFFH--KTEKVLSP---NLLQIFPKFFRFLELCFLLLFLSWILSRLPIALTISADFF 60
           MD F+FH  KTEKV +    N L+   K FR  E+   LLFL+W   R+P A+ IS +F 
Sbjct: 1   MDSFYFHNVKTEKVKAMRKYNRLRSIAKVFRIFEVLSALLFLAWTAERVPFAVKISGEFV 60

Query: 61  RKLFGFLASPLFGFLLCNAIIFALLTKPTKFSDRSAVTVVDGDEIDRIYADLIEKSGSDG 120
            KL G +ASP F FL+CN II  L+ K   FS   AV   D     ++  ++I+ + +  
Sbjct: 61  LKLGGIIASPFFVFLICNVIIITLIAKSGIFS---AVRNADS----KVCEEIIKTADTHS 120

Query: 121 VHERKVETVYKDKQIIAEPISSIDHKIEERNADTESESG----VDHPKVILRTLSEKLKP 180
               + E VY+DK+II+E +++   + E+   + E ES      D+P+V  R+ SEKL+ 
Sbjct: 121 KSVSQEEIVYQDKEIISE-VNTSTRECEDMEPEPEPESDSDFEADNPRVYRRSKSEKLER 180

Query: 181 KTQSEKLRRSETEK-CRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIV 233
           +   ++LRRSE+EK CR +E+  + L+ +DDLS+EEFQR IE FIAK+ +FRREES +IV
Sbjct: 181 EKVKKELRRSESEKKCRKIENMDEKLFPEDDLSNEEFQRAIEDFIAKQLRFRREESLSIV 234

[Close]

BLAST of CmoCh04G008110 vs. TrEMBL
Match: A0A061DFK1_THECC (TRNA--methyltransferase non-catalytic subunit trm6MTase subunit trm6, putative OS=Theobroma cacao GN=TCM_000337 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 7.6e-32
Identity = 100/223 (44.84%), Postives = 139/223 (62.33%), Query Frame = 1


Query: 16  NLLQIFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFRKLFGFLASPLFGFLLCNAI 75
           N L+   K FRF+EL   LLFL+W   R+P A+ IS +F  +L G +ASPLF FL+CNAI
Sbjct: 5   NRLRSLTKAFRFVELLVALLFLAWTFERVPFAVKISGEFVLRLGGVVASPLFVFLVCNAI 64

Query: 76  IFALLTKPTKFSDRSAVTVVDGDEIDRIYADLIEKSGSDGVHERKVETVYKDKQIIAEPI 135
           I  L+ K   F   SAV   D     ++Y ++++ + +    E + E VY+DK+II+  +
Sbjct: 65  IVTLVAKSGVF---SAVHNAD----SKLYEEIVKNAENRSKMESREEIVYEDKEIIS-GV 124

Query: 136 SSIDHKIEERNADTESESG----VDHPKVILRTLSEKLKPKTQSEK----LRRSETEKCR 195
           S+  H  E+   ++E ES     VD P+V  R+ SEK+  K   EK    LRRSETEKCR
Sbjct: 125 STCTHTFEQMEPESEPESDSDAEVDTPRVYRRSKSEKVAIKQSEEKVKKELRRSETEKCR 184

Query: 196 NLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIV 231
             E+  + L+ +D+LS+EEFQR IE FIAK+ +FRREES +IV
Sbjct: 185 KFENIDEKLFPEDELSNEEFQRTIEDFIAKQLRFRREESLSIV 219

[Close]

BLAST of CmoCh04G008110 vs. TrEMBL
Match: A0A0D2T1L0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G066400 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.6e-29
Identity = 105/240 (43.75%), Postives = 142/240 (59.17%), Query Frame = 1


Query: 1   MDLFFFH--KTEKVLSP---NLLQIFPKFFRFLELCFLLLFLSWILSRLPIALTISADFF 60
           MD F F   K EK  +    N L+   K FRFLEL   LLF +W   R+P A+ IS  F 
Sbjct: 1   MDSFGFDNVKAEKAKAMRRFNRLRSLAKAFRFLELLSALLFFAWTFERVPFAVKISGVFL 60

Query: 61  RKLFGFLASPLFGFLLCNAIIFALLTKPTKFSDRSAVTVVDGDEIDRIYADLIEKSGSDG 120
            KL G +ASPLF FL+ N II  L+ K   FS   AV  VD     +IY ++I  + +  
Sbjct: 61  LKLGGVVASPLFVFLVSNVIIVTLIAKSGIFS---AVNNVDS----KIYDEIINNAENRS 120

Query: 121 VHERKVETVYKDKQIIAEP-ISSIDHKIEERNADTESESGVDHPKVILRTLSEKLKPKTQ 180
             E + E +Y+DK+II+E  I ++  +  E   + +SE  +D+P+V  R+ SEKL  +  
Sbjct: 121 KSECQKEVLYQDKEIISEASIDTLSSEETEPEPEPDSEFEMDYPRVYRRSKSEKLAIRKS 180

Query: 181 SE----KLRRSETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIV 231
            E    +LRRSETEKCR +E+    L  +D+LS+EEFQR IE FIAK+ +FRREES +IV
Sbjct: 181 GEEVTRELRRSETEKCRKVENMDGELVPEDELSNEEFQRTIEDFIAKQLRFRREESLSIV 233

[Close]

BLAST of CmoCh04G008110 vs. TrEMBL
Match: A0A0D2T5U0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G100900 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.0e-28
Identity = 101/221 (45.70%), Postives = 131/221 (59.28%), Query Frame = 1


Query: 16  NLLQIFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFRKLFGFLASPLFGFLLCNAI 75
           N LQ   K F FLEL   LLFL+W   RLP A+ IS DF  KL G +ASPLF FL+CN I
Sbjct: 21  NWLQAPAKVFHFLELLIALLFLAWTFERLPFAVKISGDFVLKLCGVIASPLFVFLVCNVI 80

Query: 76  IFALLTKPTKFSDRSAVTVVDGDEIDRIYADLIEKSGSD-GVHERKVETVYKDKQIIAEP 135
           I  L+ K   FS     TV + D   ++Y ++ +    D    E + E   +DK+II+E 
Sbjct: 81  IAILIAKSGIFS-----TVNNAD--PKLYEEITKNVEEDRSKLESQEEDEDRDKEIISE- 140

Query: 136 ISSIDHKIEERNADTESESGVDHPKVILRTLSEKLKPKTQSEK----LRRSETEKCRNLE 195
           +       EE    +ES+S VD+P V  R+ SEKL  K + EK    LRRS ++KCR  E
Sbjct: 141 VKKCSRTREEMERPSESDSEVDNPGVYRRSKSEKLAVKKKEEKAKKELRRSASKKCRKNE 200

Query: 196 HSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVL 232
           +  D L  +D+LS+EEFQR IE FI K+ +FRREES +IVL
Sbjct: 201 NIDDELLPEDELSNEEFQRTIEDFINKQLRFRREESLSIVL 233

[Close]

BLAST of CmoCh04G008110 vs. TAIR10
Match: AT5G66440.1 (AT5G66440.1 unknown protein)

HSP 1 Score: 108.6 bits (270), Expect = 5.2e-24
Identity = 83/228 (36.40%), Postives = 123/228 (53.95%), Query Frame = 1


Query: 23  KFFRFLELCFLLLFLSWILSRLPIALTISADFFRKLFGFLASPLFGFLLCNAIIFALLTK 82
           +FFR  E+C  LLF+ W  S+LP  + IS  F R++   +++PLF FLL N+I+  LLTK
Sbjct: 28  RFFRAAEVCVALLFIFWTFSQLPFVVQISGAFLRRIAAVISTPLFVFLLGNSIVVVLLTK 87

Query: 83  PTKFSDRSAVTVVDGD-EIDRIYADLIEKSGSDGVHERKVETVYKDKQII-----AEPIS 142
               SD++   V   + EI + +   +E        +     VY DKQ+I     + P  
Sbjct: 88  S---SDQTTTAVASAETEIYQAFVRSVENRSKPSDEDLTEGIVYDDKQVIVTDLDSNPNL 147

Query: 143 SIDHKIEERNADTESESGVDHPKVILRTLSE-------KLKPKTQSEKLRRSETEK-CRN 202
           ++D  +     D++S     H KV  R+ S+        +        L+RSETEK C+ 
Sbjct: 148 TVDENMPHVEIDSDSS---PHSKVYGRSKSDVSGKQSSNMVMMMMKRSLQRSETEKFCKE 207

Query: 203 LEHSHDI----LYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVLH 233
            E+  D      Y +DDLS+EEFQ+ IEAFIAK++ FRR+ES A+V+H
Sbjct: 208 TENDDDSEEEKNYPEDDLSNEEFQKTIEAFIAKQRMFRRQESLAVVVH 249

[Close]

BLAST of CmoCh04G008110 vs. TAIR10
Match: AT4G34560.1 (AT4G34560.1 unknown protein)

HSP 1 Score: 55.5 bits (132), Expect = 5.2e-08
Identity = 67/234 (28.63%), Postives = 110/234 (47.01%), Query Frame = 1


Query: 8   KTEKVLSPNLLQIFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFRKLFGFLASPLF 67
           K+  +L+   ++ F   FR  EL  L++ +S +    P ++ IS D F++   FL SP F
Sbjct: 13  KSRGILNFQAIRSFTSLFRLFELLLLVILISKL--SFP-SVKISGDIFKEAAVFLVSPRF 72

Query: 68  GFLLCNAIIFALLTKPTKFSD--RSAVTVVDGDEIDRIYADLIEKSGSDGVHERKVETVY 127
            F + NAI+  LL K  ++S     + T  +    D +Y + + KS      E+K   VY
Sbjct: 73  VFFIGNAIVITLLAKSGRYSSSHEPSKTATEAASND-LYQEFLHKS------EKKKPVVY 132

Query: 128 KDK-QIIAEPIS--------SIDHKIEERNADTESESGVDHPKVILRTLSEKLKPKTQSE 187
             K + + +P          S  HK  E     ES +G  + K   R +SEK      S+
Sbjct: 133 ATKTEQLKKPSGGKRVSFGRSQSHKAFEAVKPLESTNGEKNMK---RYVSEKHMRVCDSD 192

Query: 188 KLRRSETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIV 231
           K      +K             +D +S+E+F+ KIEAFIA++K+ +++E   I+
Sbjct: 193 KKVVVRVKK------------PEDGMSNEQFRTKIEAFIARQKRIQKDEEHLII 221

[Close]

BLAST of CmoCh04G008110 vs. NCBI nr
Match: gi|659102374|ref|XP_008452094.1| (PREDICTED: uncharacterized protein LOC103493205 [Cucumis melo])

HSP 1 Score: 275.0 bits (702), Expect = 1.2e-70
Identity = 168/247 (68.02%), Postives = 190/247 (76.92%), Query Frame = 1


Query: 1   MDLFFFHKTEKVLSP----NLLQIFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFR 60
           MD FFF K EK+ +P    NLLQIF KFFRFLEL FLLL LSWI SRLPIAL ISAD+F 
Sbjct: 1   MDFFFFDKAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISADYFT 60

Query: 61  KLFGFLASPLFGFLLCNAIIFALLTKPTKFSDRSAVTVVDGDEIDRIYADLIEKSG---- 120
           KLF F+A+PLFGFLLCNAII AL+ KP++FS R A +    D+ DRIY DLIEK+G    
Sbjct: 61  KLFAFIATPLFGFLLCNAIIVALVAKPSQFS-RPATS----DQTDRIYEDLIEKTGTGSD 120

Query: 121 -SDGVHERKVETVYKDKQIIAE----PISSIDHKIEERNADTESESGVDHPKVILRTLSE 180
            +D   E   E VY+DK+IIAE       S D +IE +N D ES+SG+ H KVILR+LSE
Sbjct: 121 LTDSASEEVEEIVYQDKEIIAEGRVGSNYSTDCEIELKNTDLESDSGLGHSKVILRSLSE 180

Query: 181 KLK---PKTQSEKLRRSETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRRE 232
           KL     KTQSEKLRRSETEKCRNLE+S+DILYYQDDLSSEEFQRKIEAFIAKEKKFRRE
Sbjct: 181 KLNRECVKTQSEKLRRSETEKCRNLEYSNDILYYQDDLSSEEFQRKIEAFIAKEKKFRRE 240

[Close]

BLAST of CmoCh04G008110 vs. NCBI nr
Match: gi|778690713|ref|XP_011653156.1| (PREDICTED: uncharacterized protein LOC105435182 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 9.7e-65
Identity = 160/247 (64.78%), Postives = 181/247 (73.28%), Query Frame = 1


Query: 1   MDLFFFHKTEKVLSP----NLLQIFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFR 60
           MD FFF K EK+ +P    NLLQIF KFFRFLEL FLLL LSWI SRLPIAL ISA++  
Sbjct: 1   MDFFFFDKAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISAEYST 60

Query: 61  KLFGFLASPLFGFLLCNAIIFALLTKPTKFSDRSAVTVVDGDEIDRIYADLIEKSG---- 120
           KLF F+A+PLFGFLLCNAII AL+ KP++FS R         E  RIY DLI+K+G    
Sbjct: 61  KLFAFIATPLFGFLLCNAIIVALVAKPSQFSRRPT------SETHRIYEDLIDKTGTGSD 120

Query: 121 -SDGVHERKVETVYKDKQIIAE----PISSIDHKIEERNADTESESGVDHPKVILRTLSE 180
            +D   E   E VY+DKQIIAE       S D +IE +N D ESESG+   KVILR+LSE
Sbjct: 121 LTDSASEEVEEIVYQDKQIIAEGRVGSNYSTDCEIEVKNTDLESESGLGQSKVILRSLSE 180

Query: 181 KLK---PKTQSEKLRRSETEKCRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRRE 232
           KL     KT+SEKLRRSETEKC NLE ++DIL YQDDLSSEEFQRKIEAFIAKEKKFRRE
Sbjct: 181 KLNRECVKTKSEKLRRSETEKCGNLECTNDILCYQDDLSSEEFQRKIEAFIAKEKKFRRE 240

[Close]

BLAST of CmoCh04G008110 vs. NCBI nr
Match: gi|823192009|ref|XP_012491635.1| (PREDICTED: uncharacterized protein LOC105803782 [Gossypium raimondii])

HSP 1 Score: 147.1 bits (370), Expect = 3.7e-32
Identity = 104/242 (42.98%), Postives = 149/242 (61.57%), Query Frame = 1


Query: 1   MDLFFFH--KTEKVLSP---NLLQIFPKFFRFLELCFLLLFLSWILSRLPIALTISADFF 60
           MD F+FH  KTEKV +    N L+   K FR  E+   LLFL+W   R+P A+ IS +F 
Sbjct: 1   MDSFYFHNVKTEKVKAMRKYNRLRSIAKVFRIFEVLSALLFLAWTAERVPFAVKISGEFV 60

Query: 61  RKLFGFLASPLFGFLLCNAIIFALLTKPTKFSDRSAVTVVDGDEIDRIYADLIEKSGSDG 120
            KL G +ASP F FL+CN II  L+ K   FS   AV   D     ++  ++I+ + +  
Sbjct: 61  LKLGGIIASPFFVFLICNVIIITLIAKSGIFS---AVRNADS----KVCEEIIKTADTHS 120

Query: 121 VHERKVETVYKDKQIIAEPISSIDHKIEERNADTESESG----VDHPKVILRTLSEKLKP 180
               + E VY+DK+II+E +++   + E+   + E ES      D+P+V  R+ SEKL+ 
Sbjct: 121 KSVSQEEIVYQDKEIISE-VNTSTRECEDMEPEPEPESDSDFEADNPRVYRRSKSEKLER 180

Query: 181 KTQSEKLRRSETEK-CRNLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIV 233
           +   ++LRRSE+EK CR +E+  + L+ +DDLS+EEFQR IE FIAK+ +FRREES +IV
Sbjct: 181 EKVKKELRRSESEKKCRKIENMDEKLFPEDDLSNEEFQRAIEDFIAKQLRFRREESLSIV 234

[Close]

BLAST of CmoCh04G008110 vs. NCBI nr
Match: gi|590703416|ref|XP_007046867.1| (TRNA--methyltransferase non-catalytic subunit trm6MTase subunit trm6, putative [Theobroma cacao])

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 100/223 (44.84%), Postives = 139/223 (62.33%), Query Frame = 1


Query: 16  NLLQIFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFRKLFGFLASPLFGFLLCNAI 75
           N L+   K FRF+EL   LLFL+W   R+P A+ IS +F  +L G +ASPLF FL+CNAI
Sbjct: 5   NRLRSLTKAFRFVELLVALLFLAWTFERVPFAVKISGEFVLRLGGVVASPLFVFLVCNAI 64

Query: 76  IFALLTKPTKFSDRSAVTVVDGDEIDRIYADLIEKSGSDGVHERKVETVYKDKQIIAEPI 135
           I  L+ K   F   SAV   D     ++Y ++++ + +    E + E VY+DK+II+  +
Sbjct: 65  IVTLVAKSGVF---SAVHNAD----SKLYEEIVKNAENRSKMESREEIVYEDKEIIS-GV 124

Query: 136 SSIDHKIEERNADTESESG----VDHPKVILRTLSEKLKPKTQSEK----LRRSETEKCR 195
           S+  H  E+   ++E ES     VD P+V  R+ SEK+  K   EK    LRRSETEKCR
Sbjct: 125 STCTHTFEQMEPESEPESDSDAEVDTPRVYRRSKSEKVAIKQSEEKVKKELRRSETEKCR 184

Query: 196 NLEHSHDILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIV 231
             E+  + L+ +D+LS+EEFQR IE FIAK+ +FRREES +IV
Sbjct: 185 KFENIDEKLFPEDELSNEEFQRTIEDFIAKQLRFRREESLSIV 219

[Close]

BLAST of CmoCh04G008110 vs. NCBI nr
Match: gi|657948523|ref|XP_008338192.1| (PREDICTED: uncharacterized protein LOC103401262 [Malus domestica])

HSP 1 Score: 138.7 bits (348), Expect = 1.3e-29
Identity = 108/240 (45.00%), Postives = 139/240 (57.92%), Query Frame = 1


Query: 8   KTEKVLSPNLLQIFPKFFRFLELCFLLLFLSWILSRLPIALTISADFFRKLFGFLASPLF 67
           KT  +   N L+   K FRF E+   +LFLSW  +RLP ALTIS D+F  L G ++SPLF
Sbjct: 13  KTSAMRRYNRLRTAAKLFRFAEIGAGILFLSWTFARLPFALTISRDYFLLLSGVVSSPLF 72

Query: 68  GFLLCNAIIFALLTKPTKFSDRSAVTVVDGDEIDRIYADLIEKSGS---------DGVHE 127
            FLLC+ II +L+ K    S        D  E + +YA+ +E S           D V  
Sbjct: 73  VFLLCHVIIASLVLKSRHVSSTDRXN--DAVEAE-LYAEFVESSAGGADSKSQLQDNVVP 132

Query: 128 RKVE-TVYKDKQIIAEPISSIDHKIE-ERNADTESESGVDHPKVILRTLSEKLKPKTQSE 187
           R+ E  VY+DKQI++E ++S D K E E N+D++SE      K+I RT SEK + K    
Sbjct: 133 REAEEVVYQDKQIVSE-VNSADPKPETESNSDSDSEI----TKIIRRTKSEKFEKKPVPA 192

Query: 188 KLRRSETEKCRNLEHSH-----DILYYQDDLSSEEFQRKIEAFIAKEKKFRREESSAIVL 232
           KLRRSETE CR    S      +    +DDLS+EEFQR IEAFI K+ KFR +ES AIVL
Sbjct: 193 KLRRSETELCRKTVRSRKECAAEDTEEEDDLSNEEFQRAIEAFIEKQLKFRHQESQAIVL 244

The following BLAST results are available for this feature:

BLAST of CmoCh04G008110 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G008110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY10_CUCSA	6.8e-65	64.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046600 PE=4 SV=1	[more]
A0A0D2SGW9_GOSRA	2.6e-32	42.98	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G201500 PE=4 SV=1	[more]
A0A061DFK1_THECC	7.6e-32	44.84	TRNA--methyltransferase non-catalytic subunit trm6MTase subunit trm6, putative O...	[more]
A0A0D2T1L0_GOSRA	1.6e-29	43.75	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G066400 PE=4 SV=1	[more]
A0A0D2T5U0_GOSRA	1.0e-28	45.70	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G100900 PE=4 SV=1	[more]

BLAST of CmoCh04G008110 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G66440.1	5.2e-24	36.40	unknown protein	[more]
AT4G34560.1	5.2e-08	28.63	unknown protein	[more]

BLAST of CmoCh04G008110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102374\|ref\|XP_008452094.1\|	1.2e-70	68.02	PREDICTED: uncharacterized protein LOC103493205 [Cucumis melo]	[more]
gi\|778690713\|ref\|XP_011653156.1\|	9.7e-65	64.78	PREDICTED: uncharacterized protein LOC105435182 [Cucumis sativus]	[more]
gi\|823192009\|ref\|XP_012491635.1\|	3.7e-32	42.98	PREDICTED: uncharacterized protein LOC105803782 [Gossypium raimondii]	[more]
gi\|590703416\|ref\|XP_007046867.1\|	1.1e-31	44.84	TRNA--methyltransferase non-catalytic subunit trm6MTase subunit trm6, putative [...	[more]
gi\|657948523\|ref\|XP_008338192.1\|	1.3e-29	45.00	PREDICTED: uncharacterized protein LOC103401262 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G008110.1	CmoCh04G008110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33640	FAMILY NOT NAMED	coord: 1..232 score: 3.5
None	No IPR available	PANTHER	PTHR33640:SF1	SUBFAMILY NOT NAMED	coord: 1..232 score: 3.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G008110	Cucsa.106440	Cucumber (Gy14) v1	cgycmoB0245
CmoCh04G008110	CmaCh04G007620	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G008110	CmaCh16G006280	Cucurbita maxima (Rimu)	cmacmoB337
CmoCh04G008110	Cla014578	Watermelon (97103) v1	cmowmB671
CmoCh04G008110	Csa4G046600	Cucumber (Chinese Long) v2	cmocuB705
CmoCh04G008110	MELO3C016396	Melon (DHL92) v3.5.1	cmomeB686
CmoCh04G008110	ClCG07G008620	Watermelon (Charleston Gray)	cmowcgB670
CmoCh04G008110	CSPI04G05380	Wild cucumber (PI 183967)	cmocpiB715
CmoCh04G008110	Lsi07G002470	Bottle gourd (USVL1VR-Ls)	cmolsiB692
CmoCh04G008110	Lsi01G006610	Bottle gourd (USVL1VR-Ls)	cmolsiB632
CmoCh04G008110	Cp4.1LG01g06930	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G008110	Cp4.1LG14g01730	Cucurbita pepo (Zucchini)	cmocpeB667
CmoCh04G008110	MELO3C016396.2	Melon (DHL92) v3.6.1	cmomedB779
CmoCh04G008110	MELO3C007844.2	Melon (DHL92) v3.6.1	cmomedB797
CmoCh04G008110	CsaV3_4G005530	Cucumber (Chinese Long) v3	cmocucB0833
CmoCh04G008110	Cla97C07G135660	Watermelon (97103) v2	cmowmbB748
CmoCh04G008110	Bhi01G001859	Wax gourd	cmowgoB0843
CmoCh04G008110	CsGy4G005280	Cucumber (Gy14) v2	cgybcmoB521
CmoCh04G008110	Carg05749	Silver-seed gourd	carcmoB1371
CmoCh04G008110	Carg14159	Silver-seed gourd	carcmoB1259

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G008110	CmoCh16G006840	Cucurbita moschata (Rifu)	cmocmoB285

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G008110	Watermelon (97103) v2	cmowmbB682
CmoCh04G008110	Cucurbita moschata (Rifu)	cmocmoB451
CmoCh04G008110	Wild cucumber (PI 183967)	cmocpiB775
CmoCh04G008110	Melon (DHL92) v3.5.1	cmomeB702
CmoCh04G008110	Watermelon (Charleston Gray)	cmowcgB641
CmoCh04G008110	Watermelon (97103) v1	cmowmB711
CmoCh04G008110	Cucurbita pepo (Zucchini)	cmocpeB655
CmoCh04G008110	Cucurbita pepo (Zucchini)	cmocpeB684