CsaV3_4G004620 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G004620
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionPolyadenylate-binding protein 2
Locationchr4 : 2888082 .. 2891912 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTTCTACGCATCGAACGAGGAGATTTCTAGAAACCAAAGCGGAATTGTGAGCGAACGAGATATGGAGGAAGAGGAGCACGAGGTATACGGTGGAGAAATCCCAGTTGAAGGGGAGATGGAAGGAGACGTTGACATGTCTGCCGGCGACGACGACGCTGTCAAGGTTGCCATTTGTTCTTTCTCTTTCTGGTTCTCGTGCTTTGGAGAGAATCAGAAGAATTACAATTGTGATCGTTTATGTATTTCAGGAGCTTGACGAGATGAAAAAGCGCTTGAAGGAGATGGAGGAAGAAGCAGCGGCTCTTCGAGAAATGCAGGCCAAGGTTGAAAAAGAAATGGGAGCTGTGCAAGGTTGTTTTCTCATGATTACGCATTATTGTTTTCGTTTAGAAACATCTAGTCATGGAATCTCTTGAATTTGGATTGTGATGTTGTAAGCGATGATTTGGGGCTTGAAATTTTTGATGTGTTGTTGTGATATATTTGCTAGTATTACCACATATCTGTTTCGTTTCTTGCAAATTGCTAGCATATTACCACATAGCTGTGCAAGGTTGACAAAACTCTTGACATTATGGTTCGTAATTGTTACTTTTAAATTTTAGAATATGTTTAAGCTTGTGTTTAGTTTTATGTAACCTAGGGGAGTAATAATCGTATGTGATTATGGTTTTAGACAGAAACCAATATTGAATTATGCGATCATGTTGGTTGAAAGTTTCTTAAACTGGATGAATTTTAAAGTATGGTATTATAGTTAGTTTGTTTCTATAATTATTCTCCAATTTGGCCTATCTTATTTTACCTATTGTTGTTATGTTTGATGCAGATCCTGCTGGTACATCAGCTAGTCAAGCAGGCAAGGAGGAGACTGATTCACGATCAGTATTTGTTGGCAATGTGAGAAGAAAAATGTCCCTACTGATGTTCTTTAGATTTGAGAAAAACTTTTTAGTTATTTGATCTGTGGAAAAATGTTATTGAAATGAGGAATTTCTGCAAAAATTCAAAAAGAAAAAAAAAAGAAGGAAGAAGAATAGAAAGAAAGAAGAAAACTGTGAACGATGGTTGAAATACTGGTATAATGGGAAAAAATCAGTGAGAAAAAGAAAGAAAAAAAGAAAAAGAATCTGAAACATCAAAAACCATTAGTGAGTTGTTGCATTTAGAACAAAGGGACTGTTGCTAGTAGAACTTATGTTGCTGTAAAACATGCGCTTTGGAGGCTGGGACCGTTAAATGTGGAATAATGATGTCGATGGCTCAACTCTAGGTGACAACTCAAATGTCTCCGAGGAAGCAGAGGCGAGTCAAGTGCATGCAATTTTAGTTGCAGAGCCTTGTCAATGCTCGCAGTATTATCGTTTGTCTCACAAATGAGCTAAAAGGTGGAGGCGAGGGTGTAAGATAAACGCTTTTTTGTGGAATTATTTTTCTAGTTTGTGCTTCATTTGACTCGGTTAGACCAAATGTTGGATTTTAATGCATGCATTTCACCTTAACCAGGTGATCTTTGAAAGACTATTAGTCCTTTTCTTCATATTAGAAAATTTTACTAGATTTATTTATTAATCTAGACTTTTCCTTTTAGTTAGAAACTCAACCTGTCATCTTCCGGCAGAGAGTCTTCTAGTTTCATAGTGGTAATTTTATTTCAAAACTATGTGAACTAAGATTAATGTGAGAAATCCTCCATGTTGAAGAATAAATACCTCATTCTCAATCATATCTAATGTGGAACTGTTTTCTACTACTTATAATTGATCTATTAGCAGAGGGAGGCATGCTTGGACATGCATCTGCCATGTGAATCTCATGCCTCTGATTGACTGCTACTTCTACATATGTTCATTGAACATATGAGTTGGATTTTCGTGGTGATTTGGTGATTTTGTTCATAGTTAATAATTTCTGATTCACTTCCCATGCCATTGGAAGTTTATTACTTCTTAATGTTGCTCTGGTGTATTTATCCCCAAGCCTTGTTGATTACATGTGATGAAGTTTGCTTTTCTTTTTTTGTTTTTGTTTTTGTACAAAGCTTCTTAGCGTAAAACTTTATTAAGAAACCAAACAATTAAGTCACTGAAAAAGTAAGTAGTATTTATATTTATATTAAAAGCTAAACAACAATCATAAGACTTTTTTTTTAAAACATACTAACTTAATTATTGCTGTCTGATGTGTTCTTCGAACAGAGAACACTAGCTTTGTATTCACTTTTATAGAACTTAACTATTTTATGCTCAAAGCTCTACTTCAACAATCAACGTCCTTGTTTTGAAGGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACTGATAAATTTGGTCAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGAAGCTGTTCAAGAGGCTCTCGTTCTGAATGAATCTGAGCTACATGGGCGGCAACTGAAGGTGAGTCTTCCATTCTCTAGGTTTTCCATAAAAAATAAAAAGGTTTTTCGTTCACAAAAAAAAAAAAAAAGGAAATTTCTGGAAGGAGAAACCTTTCTGGTTCACTGGTTTGGTTTGGTGTGAATAGATAGATATAGGTTAAATTTCAAATTTGGTCGTAGGGTTTGAGTGATGTTAGTTATGTTAGAATTGAGTCGTAATGGTTCGTAATTAATATTTACTCCCTACGGTTTCATAAAACCTTCACAGATAGGTTCAACGATAAAGACATTTATGAGAATTTTATCAAATAATAGGGACTGTCTGTGAGGTTTTGTCAAAACTATAGAGACTAAATTCTATCTTTACTCTAACACTTCAATTTCACAAACCCTAGGAACAAATTTGTAATTTACTTCAACCAGATAGATATCATGCAACGCTTGGGAACTTCAATATCACTCTGACCAATATTGACATTATTTGCTTGATTACACCATTCCAGGTTTTGCCCAAGAGAACAAATGTTCCTGGTATGAAGCAATATCGTGCACGTCGCTATAACCCGTACGTGGGATTTAGGAGACCTTATGCACCACCATATTTCTATTCACCTTATGGATACGGGTACAGTTTCTAGTTTCCTAATCTTGCATTGTCATGGAAATTGTTGATTCTGCCAGTTTCTTGATCCTTCAATATCCCAATGCAGGAAGATGCCCCGGTTTCGTAGGTCCATGAGGTACATGCCTTATTATTAGATGATGCCACATCATTGTTCAGGTTTAATAAGTTTGTCCTGAAAGAGTTGGCAGTTGCTTTTGATCCTCGAGAGAATAGAGAAAGGATATATGTCTATATTCATGTTATATTGTTATCTGTCTATTGCTTTTGTTATCTTGGATATAAATTACTTTGCCGTTTCAATAAGTATATATATATATATTTTTGCCTAATTACTCGTTCATAATACACTGATGCTGTCCAGTTTTAAGGGGGCGTTTTAATTAACCTTTTAGTGTTTATATGTGAAAAAAAATGTTTGTAAATGCTAAAAAAAAAAAGTTTATAAACACCAAAAAGTCGATTCAAATGGGTGCTTGCGTTTGATAATGATTCTTCTCAATAATTGCTGGAAAAAAAGTTAGGTTATCGTTGCTTCTACTAAATTGCATAAACTCAACGATATTAAAAAAAATTATGGTTCAATTATAGAGTACACTGCTACATTTTCATCGAGAAAATTCATGGAAAAAAGATAATTTGATCTAAATTGGGTGATGATGCTCTGTTTTAGGACTTCGCTAATTGATCATATACTTACCTTTTTATCTATTTTGGAATCTCTTGTCCGCAAAATGAAATCTCT

mRNA sequence

ATGCAGTTCTACGCATCGAACGAGGAGATTTCTAGAAACCAAAGCGGAATTGTGAGCGAACGAGATATGGAGGAAGAGGAGCACGAGGTATACGGTGGAGAAATCCCAGTTGAAGGGGAGATGGAAGGAGACGTTGACATGTCTGCCGGCGACGACGACGCTGTCAAGGAGCTTGACGAGATGAAAAAGCGCTTGAAGGAGATGGAGGAAGAAGCAGCGGCTCTTCGAGAAATGCAGGCCAAGGTTGAAAAAGAAATGGGAGCTGTGCAAGATCCTGCTGGTACATCAGCTAGTCAAGCAGGCAAGGAGGAGACTGATTCACGATCAGTATTTGTTGGCAATGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACTGATAAATTTGGTCAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGAAGCTGTTCAAGAGGCTCTCGTTCTGAATGAATCTGAGCTACATGGGCGGCAACTGAAGGTTTTGCCCAAGAGAACAAATGTTCCTGGTATGAAGCAATATCGTGCACGTCGCTATAACCCGTACGTGGGATTTAGGAGACCTTATGCACCACCATATTTCTATTCACCTTATGGATACGGGAAGATGCCCCGGTTTCGTAGGTCCATGAGGTACATGCCTTATTATTAG

Coding sequence (CDS)

ATGCAGTTCTACGCATCGAACGAGGAGATTTCTAGAAACCAAAGCGGAATTGTGAGCGAACGAGATATGGAGGAAGAGGAGCACGAGGTATACGGTGGAGAAATCCCAGTTGAAGGGGAGATGGAAGGAGACGTTGACATGTCTGCCGGCGACGACGACGCTGTCAAGGAGCTTGACGAGATGAAAAAGCGCTTGAAGGAGATGGAGGAAGAAGCAGCGGCTCTTCGAGAAATGCAGGCCAAGGTTGAAAAAGAAATGGGAGCTGTGCAAGATCCTGCTGGTACATCAGCTAGTCAAGCAGGCAAGGAGGAGACTGATTCACGATCAGTATTTGTTGGCAATGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACTGATAAATTTGGTCAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGAAGCTGTTCAAGAGGCTCTCGTTCTGAATGAATCTGAGCTACATGGGCGGCAACTGAAGGTTTTGCCCAAGAGAACAAATGTTCCTGGTATGAAGCAATATCGTGCACGTCGCTATAACCCGTACGTGGGATTTAGGAGACCTTATGCACCACCATATTTCTATTCACCTTATGGATACGGGAAGATGCCCCGGTTTCGTAGGTCCATGAGGTACATGCCTTATTATTAG

Protein sequence

MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Homology
[Close]
BLAST of CsaV3_4G004620 vs. NCBI nr
Match: KGN53209.1 (hypothetical protein Csa_4G026860 [Cucumis sativus])

HSP 1 Score: 346.7 bits (888), Expect = 6.3e-92
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0 

Query: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXX 60
           MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXX
Sbjct: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACT 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACT
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACT 120

Query: 121 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL 180
           PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL
Sbjct: 121 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL 180

Query: 181 PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 235
           PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 181 PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

[Close]
BLAST of CsaV3_4G004620 vs. NCBI nr
Match: XP_008453809.2 (PREDICTED: polyadenylate-binding protein 2 isoform X1 [Cucumis melo])

HSP 1 Score: 338.6 bits (867), Expect = 1.7e-89
Identity = 229/234 (97.86%), Postives = 230/234 (98.29%), Query Frame = 0 

Query: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXX 60
           MQFYASNEEISRN+S I SERDMEEEEHEVYGGEIPVEGEMEGDVDMS XXXXXXXXXXX
Sbjct: 1   MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACT 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EETDSRSVFVGNVDYACT
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEETDSRSVFVGNVDYACT 120

Query: 121 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL 180
           PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL
Sbjct: 121 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL 180

Query: 181 PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 235
           PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 181 PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

[Close]
BLAST of CsaV3_4G004620 vs. NCBI nr
Match: XP_004146877.1 (PREDICTED: polyadenylate-binding protein 2 [Cucumis sativus])

HSP 1 Score: 306.6 bits (784), Expect = 7.3e-80
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0 

Query: 23  MEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 82
           MEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 83  XXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 142
           XXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120

Query: 143 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 202
           KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG
Sbjct: 121 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 180

Query: 203 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 235
           FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 181 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 212

[Close]
BLAST of CsaV3_4G004620 vs. NCBI nr
Match: XP_022929268.1 (polyadenylate-binding protein 2-like [Cucurbita moschata] >XP_022929269.1 polyadenylate-binding protein 2-like [Cucurbita moschata] >XP_022985028.1 polyadenylate-binding protein 2-like [Cucurbita maxima] >XP_023553273.1 polyadenylate-binding protein 2-like [Cucurbita pepo subsp. pepo] >XP_023553274.1 polyadenylate-binding protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 299.7 bits (766), Expect = 8.9e-78
Identity = 197/212 (92.92%), Postives = 200/212 (94.34%), Query Frame = 0 

Query: 23  MEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 82
           MEEEEHEVYGGEIPVEGEM+GDVDMS          XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 83  XXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 142
           XXXXXXXXXXXXXXXXXXX EETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 61  XXXXXXXXXXXXXXXXXXXKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120

Query: 143 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 202
           KFGQPKGFAYVEFLEA+AVQEAL+LNESELHGRQLKVLPKRTNVPGMKQYR RRYNPYVG
Sbjct: 121 KFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVG 180

Query: 203 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 235
           FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 181 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 212

[Close]
BLAST of CsaV3_4G004620 vs. NCBI nr
Match: XP_022136947.1 (polyadenylate-binding protein 2-like isoform X1 [Momordica charantia])

HSP 1 Score: 297.7 bits (761), Expect = 3.4e-77
Identity = 206/212 (97.17%), Postives = 209/212 (98.58%), Query Frame = 0 

Query: 23  MEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 82
           MEEEEHEVYGGEIPVEGEM+GDVDMSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 83  XXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 142
           XXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120

Query: 143 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 202
           KFGQPKGFAYVEFLEAEAVQEAL+LNESELHGRQLKVLPKRTNVPGMKQYR RRYNPY+G
Sbjct: 121 KFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMG 180

Query: 203 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 235
           FRRPY PPYFYSPYGYGKMPRFRR MRYMPYY
Sbjct: 181 FRRPYVPPYFYSPYGYGKMPRFRRPMRYMPYY 212

[Close]
BLAST of CsaV3_4G004620 vs. TAIR10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 243.0 bits (619), Expect = 1.8e-64
Identity = 159/219 (72.60%), Postives = 171/219 (78.08%), Query Frame = 0 

Query: 23  MEEEEHEVYGGEIPVEGEMEGDVD------MSAXXXXXXXXXXXXXXXXXXXXXXXXXXX 82
           MEEEEHEVYGGEIP  GEM+GD++         XXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEEEEHEVYGGEIPDVGEMDGDMEALNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 83  XXXXXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNR 142
           X                         EE D+RSVFVGNVDYACTPEEVQQHFQ+CGTV+R
Sbjct: 61  XEMQAKVEKEMGAQDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHR 120

Query: 143 VTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARR 202
           VTILTDKFGQPKGFAYVEF+E EAVQEAL LNESELHGRQLKVL KRTNVPG+KQ+R RR
Sbjct: 121 VTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGRR 180

Query: 203 YNPYVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPY 234
           +NPY+G  FRRP+  PY YSPYGYGK PRFRR MRYMPY
Sbjct: 181 FNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMRYMPY 219

[Close]
BLAST of CsaV3_4G004620 vs. TAIR10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 243.0 bits (619), Expect = 1.8e-64
Identity = 131/216 (60.65%), Postives = 141/216 (65.28%), Query Frame = 0 

Query: 23  MEEEEHEVYGGEIPVEGEM---EGDVDMSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 82
           MEEEEHEVYGGEIP  G+    + D+DMSA                              
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 83  XXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 142
                                  EE D+RSV+VGNVDYACTPEEVQ HFQ+CGTVNRVTI
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120

Query: 143 LTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNP 202
           L DKFGQPKGFAYVEF+E EAVQEAL LNESELHGRQLKV PKRTNVPGMKQY   R+NP
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNP 180

Query: 203 YVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPY 234
            +G  FRRP+ PPYFYSPYGYGK PRFRR MRYMPY
Sbjct: 181 SMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216

[Close]
BLAST of CsaV3_4G004620 vs. TAIR10
Match: AT5G51120.2 (polyadenylate-binding protein 1)

HSP 1 Score: 201.1 bits (510), Expect = 7.8e-52
Identity = 100/133 (75.19%), Postives = 111/133 (83.46%), Query Frame = 0 

Query: 103 EETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQ 162
           EE DSRS++VGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEF+E EAVQ
Sbjct: 136 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQ 195

Query: 163 EALVLNESELHGRQLKVLPKRTNVPGMKQY--RARRYNPYVGFRRPYAPPYFYSPYGYGK 222
            +L+LNESELHGRQ+KV  KRTNVPGM+Q+  R R + P  GF  P  P  FY PY YG+
Sbjct: 196 NSLILNESELHGRQIKVSAKRTNVPGMRQFRGRGRPFRPMRGF-MPGVP--FYPPYAYGR 255

Query: 223 MPRFRRSMRYMPY 234
           +PRFRR MRY PY
Sbjct: 256 VPRFRRPMRYRPY 265

[Close]
BLAST of CsaV3_4G004620 vs. TAIR10
Match: AT3G12640.1 (RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-10
Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = 0 

Query: 103 EETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFLEAEAV 162
           E+  SR++FV NV +  T + + +HF   G V +  I+TD   GQP G AY+EF   EA 
Sbjct: 475 EDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAA 534

Query: 163 QEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVGFRRPYAPPYF 213
           + AL L+ +    R LK++ K +N  G  Q  A   +   G R   AP YF
Sbjct: 535 ENALSLDGTSFMSRILKIV-KGSN--GQNQEAASSMSWSRGGRFTRAPSYF 582

[Close]
BLAST of CsaV3_4G004620 vs. TAIR10
Match: AT3G55460.1 (SC35-like splicing factor 30)

HSP 1 Score: 52.0 bits (123), Expect = 5.8e-07
Identity = 28/74 (37.84%), Postives = 45/74 (60.81%), Query Frame = 0 

Query: 109 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEA-EAVQEALV 168
           S+ V N+   C PEE+++ F+  G V  V I  D + GQP+GFA+VEF++A +A +    
Sbjct: 48  SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRS 107

Query: 169 LNESELHGRQLKVL 181
           +N     GR++ V+
Sbjct: 108 MNRRSFAGREITVV 121

[Close]
BLAST of CsaV3_4G004620 vs. Swiss-Prot
Match: sp|Q9FJN9|PABN2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.2e-63
Identity = 159/219 (72.60%), Postives = 171/219 (78.08%), Query Frame = 0 

Query: 23  MEEEEHEVYGGEIPVEGEMEGDVD------MSAXXXXXXXXXXXXXXXXXXXXXXXXXXX 82
           MEEEEHEVYGGEIP  GEM+GD++         XXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEEEEHEVYGGEIPDVGEMDGDMEALNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 83  XXXXXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNR 142
           X                         EE D+RSVFVGNVDYACTPEEVQQHFQ+CGTV+R
Sbjct: 61  XEMQAKVEKEMGAQDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHR 120

Query: 143 VTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARR 202
           VTILTDKFGQPKGFAYVEF+E EAVQEAL LNESELHGRQLKVL KRTNVPG+KQ+R RR
Sbjct: 121 VTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGRR 180

Query: 203 YNPYVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPY 234
           +NPY+G  FRRP+  PY YSPYGYGK PRFRR MRYMPY
Sbjct: 181 FNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMRYMPY 219

[Close]
BLAST of CsaV3_4G004620 vs. Swiss-Prot
Match: sp|Q9LX90|PABN3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.2e-63
Identity = 131/216 (60.65%), Postives = 141/216 (65.28%), Query Frame = 0 

Query: 23  MEEEEHEVYGGEIPVEGEM---EGDVDMSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 82
           MEEEEHEVYGGEIP  G+    + D+DMSA                              
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 83  XXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 142
                                  EE D+RSV+VGNVDYACTPEEVQ HFQ+CGTVNRVTI
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120

Query: 143 LTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNP 202
           L DKFGQPKGFAYVEF+E EAVQEAL LNESELHGRQLKV PKRTNVPGMKQY   R+NP
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNP 180

Query: 203 YVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPY 234
            +G  FRRP+ PPYFYSPYGYGK PRFRR MRYMPY
Sbjct: 181 SMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216

[Close]
BLAST of CsaV3_4G004620 vs. Swiss-Prot
Match: sp|Q93VI4|PABN1_ARATH (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.4e-50
Identity = 100/133 (75.19%), Postives = 111/133 (83.46%), Query Frame = 0 

Query: 103 EETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQ 162
           EE DSRS++VGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEF+E EAVQ
Sbjct: 98  EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQ 157

Query: 163 EALVLNESELHGRQLKVLPKRTNVPGMKQY--RARRYNPYVGFRRPYAPPYFYSPYGYGK 222
            +L+LNESELHGRQ+KV  KRTNVPGM+Q+  R R + P  GF  P  P  FY PY YG+
Sbjct: 158 NSLILNESELHGRQIKVSAKRTNVPGMRQFRGRGRPFRPMRGF-MPGVP--FYPPYAYGR 217

Query: 223 MPRFRRSMRYMPY 234
           +PRFRR MRY PY
Sbjct: 218 VPRFRRPMRYRPY 227

[Close]
BLAST of CsaV3_4G004620 vs. Swiss-Prot
Match: sp|O14327|PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.9e-27
Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 0 

Query: 106 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEAEAVQEA 165
           D++SV+VGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E   V  A
Sbjct: 53  DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112

Query: 166 LVLNESELHGRQLKVLPKRTNVPGMKQ 192
           L+LN S LH R LKV PKRTNVPGM +
Sbjct: 113 LLLNGSMLHERPLKVTPKRTNVPGMSR 139

[Close]
BLAST of CsaV3_4G004620 vs. Swiss-Prot
Match: sp|Q28165|PABP2_BOVIN (Polyadenylate-binding protein 2 OS=Bos taurus OX=9913 GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 119.8 bits (299), Expect = 4.1e-26
Identity = 68/140 (48.57%), Postives = 87/140 (62.14%), Query Frame = 0 

Query: 104 ETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEAEAVQ 163
           E D+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + E+V+
Sbjct: 168 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVR 227

Query: 164 EALVLNESELHGRQLKVLPKRTNVPGMK---------QYRARRYNPYVGFRRPYAPPYFY 223
            +L L+ES   GRQ+KV+PKRTN PG+          +YRAR  N Y   R  +   +  
Sbjct: 228 TSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTN-YNSSRSRFYSGFNS 287

Query: 224 SPYGYGKMPRFRRSMRYMPY 234
            P G     R R +  Y PY
Sbjct: 288 RPRGRVYRGRARATSWYSPY 306

[Close]
BLAST of CsaV3_4G004620 vs. TrEMBL
Match: tr|A0A0A0KWF2|A0A0A0KWF2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026860 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 4.2e-92
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0 

Query: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXX 60
           MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXX
Sbjct: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACT 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACT
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACT 120

Query: 121 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL 180
           PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL
Sbjct: 121 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL 180

Query: 181 PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 235
           PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 181 PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

[Close]
BLAST of CsaV3_4G004620 vs. TrEMBL
Match: tr|A0A1S3BX92|A0A1S3BX92_CUCME (polyadenylate-binding protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494425 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.1e-89
Identity = 229/234 (97.86%), Postives = 230/234 (98.29%), Query Frame = 0 

Query: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXX 60
           MQFYASNEEISRN+S I SERDMEEEEHEVYGGEIPVEGEMEGDVDMS XXXXXXXXXXX
Sbjct: 1   MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACT 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EETDSRSVFVGNVDYACT
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEETDSRSVFVGNVDYACT 120

Query: 121 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL 180
           PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL
Sbjct: 121 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL 180

Query: 181 PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 235
           PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 181 PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

[Close]
BLAST of CsaV3_4G004620 vs. TrEMBL
Match: tr|A0A2R6S330|A0A2R6S330_ACTCH (Polyadenylate-binding protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc01202 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.1e-71
Identity = 170/214 (79.44%), Postives = 178/214 (83.18%), Query Frame = 0 

Query: 23  MEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 82
           MEEEEHEVYGGEIPVE EM+ DVDMS          XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEEEEHEVYGGEIPVEAEMDADVDMSVADDDAVKELXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 83  XXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 142
           XXX                 EE DSRS+FVGNVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 61  XXXMGAVQDPANAAATQASREEVDSRSIFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120

Query: 143 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYV- 202
           KFGQPKGFAYVEF+E EAVQEAL+LNESELHGRQLKV+ KRTNVPGMKQ+R RRYNPY+ 
Sbjct: 121 KFGQPKGFAYVEFVEVEAVQEALLLNESELHGRQLKVMAKRTNVPGMKQFRGRRYNPYMG 180

Query: 203 -GFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 235
            GFRRPY PPYFYSPYGYGK+PRFRRSMRYMPYY
Sbjct: 181 YGFRRPYVPPYFYSPYGYGKVPRFRRSMRYMPYY 214

[Close]
BLAST of CsaV3_4G004620 vs. TrEMBL
Match: tr|K7KQW5|K7KQW5_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100789721 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.2e-70
Identity = 164/215 (76.28%), Postives = 171/215 (79.53%), Query Frame = 0 

Query: 23  MEEEEHEVYGGEIPVEGEMEGDVDMS-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 82
           MEEEEHEVYGGEIP EGEMEGD+DMS A             XXXXXXXXXXXXXXXXXX 
Sbjct: 1   MEEEEHEVYGGEIPDEGEMEGDIDMSAADDDAAVKELDEMKXXXXXXXXXXXXXXXXXXK 60

Query: 83  XXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILT 142
                                EE DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILT
Sbjct: 61  VDKEIGSVQDPANSAASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILT 120

Query: 143 DKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYV 202
           DKFGQPKGFAYVEF+EAEAVQEAL+LNESELHGRQLKVLPKRTNVPGMKQYR RR+NPY+
Sbjct: 121 DKFGQPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYM 180

Query: 203 --GFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 235
             GFRRPY PPYFYSPYGYGK+PRFRR  RYMPY+
Sbjct: 181 AYGFRRPYTPPYFYSPYGYGKVPRFRRPNRYMPYH 215

[Close]
BLAST of CsaV3_4G004620 vs. TrEMBL
Match: tr|A0A1S3UR73|A0A1S3UR73_VIGRR (polyadenylate-binding protein 2 isoform X1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106768125 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.2e-70
Identity = 167/215 (77.67%), Postives = 172/215 (80.00%), Query Frame = 0 

Query: 23  MEEEEHEVYGGEIPVEGEMEGDVDMS-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 82
           MEEEEHEVYGGEIP EGEMEGDVDMS A            XXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEEEEHEVYGGEIPDEGEMEGDVDMSAADDDAAVKELDEMXXXXXXXXXXXXXXXXXXXX 60

Query: 83  XXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILT 142
                                EE DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILT
Sbjct: 61  VEKEIGSVQDPANAAASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILT 120

Query: 143 DKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYV 202
           DKFGQPKGFAYVEF+E EAVQEALVLNESELHGRQLKVLPKRTNVPGMKQ+R RR+NPY+
Sbjct: 121 DKFGQPKGFAYVEFVEVEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQHRPRRFNPYM 180

Query: 203 --GFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 235
             GFRRPY PPYFYSPYGYGK+PRFRR  RYMPYY
Sbjct: 181 AYGFRRPYTPPYFYSPYGYGKVPRFRRPNRYMPYY 215

The following BLAST results are available for this feature:
BLAST of CsaV3_4G004620 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53209.16.3e-92100.00hypothetical protein Csa_4G026860 [Cucumis sativus][more]
XP_008453809.21.7e-8997.86PREDICTED: polyadenylate-binding protein 2 isoform X1 [Cucumis melo][more]
XP_004146877.17.3e-80100.00PREDICTED: polyadenylate-binding protein 2 [Cucumis sativus][more]
XP_022929268.18.9e-7892.92polyadenylate-binding protein 2-like [Cucurbita moschata] >XP_022929269.1 polyad... [more]
XP_022136947.13.4e-7797.17polyadenylate-binding protein 2-like isoform X1 [Momordica charantia][more]
BLAST of CsaV3_4G004620 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G65260.11.8e-6472.60RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G10350.11.8e-6460.65RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G51120.27.8e-5275.19polyadenylate-binding protein 1[more]
AT3G12640.11.1e-1037.84RNA binding (RRM/RBD/RNP motifs) family protein[more]
AT3G55460.15.8e-0737.84SC35-like splicing factor 30[more]
BLAST of CsaV3_4G004620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FJN9|PABN2_ARATH3.2e-6372.60Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV... [more]
sp|Q9LX90|PABN3_ARATH3.2e-6360.65Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV... [more]
sp|Q93VI4|PABN1_ARATH1.4e-5075.19Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV... [more]
sp|O14327|PAB2_SCHPO4.9e-2768.97Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ... [more]
sp|Q28165|PABP2_BOVIN4.1e-2648.57Polyadenylate-binding protein 2 OS=Bos taurus OX=9913 GN=PABPN1 PE=1 SV=3[more]
BLAST of CsaV3_4G004620 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KWF2|A0A0A0KWF2_CUCSA4.2e-92100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026860 PE=4 SV=1[more]
tr|A0A1S3BX92|A0A1S3BX92_CUCME1.1e-8997.86polyadenylate-binding protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034944... [more]
tr|A0A2R6S330|A0A2R6S330_ACTCH4.1e-7179.44Polyadenylate-binding protein OS=Actinidia chinensis var. chinensis OX=1590841 G... [more]
tr|K7KQW5|K7KQW5_SOYBN1.2e-7076.28Uncharacterized protein OS=Glycine max OX=3847 GN=100789721 PE=4 SV=1[more]
tr|A0A1S3UR73|A0A1S3UR73_VIGRR1.2e-7077.67polyadenylate-binding protein 2 isoform X1 OS=Vigna radiata var. radiata OX=3916... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016607 nuclear speck
cellular_component GO:0005774 vacuolar membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0008143 poly(A) binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G004620.1CsaV3_4G004620.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 51..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..107
NoneNo IPR availablePANTHERPTHR43987FAMILY NOT NAMEDcoord: 43..234
NoneNo IPR availablePANTHERPTHR43987:SF1SUBFAMILY NOT NAMEDcoord: 43..234
NoneNo IPR availableCDDcd12306RRM_II_PABPscoord: 109..180
e-value: 3.77596E-47
score: 151.675
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 109..180
e-value: 3.7E-20
score: 83.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 110..178
e-value: 9.8E-17
score: 60.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 108..184
score: 16.773
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 19..192
e-value: 1.4E-26
score: 95.4
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 98..208

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G004620CSPI04G04520Wild cucumber (PI 183967)cpicucB213
CsaV3_4G004620Cucsa.093720Cucumber (Gy14) v1cgycucB102
CsaV3_4G004620CmaCh16G002630Cucurbita maxima (Rimu)cmacucB0387
CsaV3_4G004620CmaCh16G006980Cucurbita maxima (Rimu)cmacucB0393
CsaV3_4G004620CmaCh04G004050Cucurbita maxima (Rimu)cmacucB0842
CsaV3_4G004620CmoCh16G007570Cucurbita moschata (Rifu)cmocucB0388
CsaV3_4G004620CmoCh16G002650Cucurbita moschata (Rifu)cmocucB0384
CsaV3_4G004620Cp4.1LG14g01130Cucurbita pepo (Zucchini)cpecucB0266
CsaV3_4G004620Cp4.1LG19g09910Cucurbita pepo (Zucchini)cpecucB0610
CsaV3_4G004620Cp4.1LG01g03140Cucurbita pepo (Zucchini)cpecucB0498
CsaV3_4G004620Cp4.1LG14g05270Cucurbita pepo (Zucchini)cpecucB0262
CsaV3_4G004620CsGy4G004430Cucumber (Gy14) v2cgybcucB171
CsaV3_4G004620Carg08080Silver-seed gourdcarcucB0405
CsaV3_4G004620Carg16787Silver-seed gourdcarcucB0910
CsaV3_4G004620Carg05810Silver-seed gourdcarcucB1063
CsaV3_4G004620Cla010672Watermelon (97103) v1cucwmB324
CsaV3_4G004620Cla014132Watermelon (97103) v1cucwmB341
CsaV3_4G004620MELO3C017602Melon (DHL92) v3.5.1cucmeB315
CsaV3_4G004620ClCG07G017390Watermelon (Charleston Gray)cucwcgB336
CsaV3_4G004620Lsi07G001590Bottle gourd (USVL1VR-Ls)cuclsiB322
CsaV3_4G004620MELO3C017602.2Melon (DHL92) v3.6.1cucmedB307
CsaV3_4G004620Cla97C07G144430Watermelon (97103) v2cucwmbB324
CsaV3_4G004620Bhi01G001954Wax gourdcucwgoB381
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_4G004620CsaV3_UNG128990Cucumber (Chinese Long) v3cuccucB167
CsaV3_4G004620CsaV3_UNG158170Cucumber (Chinese Long) v3cuccucB168
CsaV3_4G004620CsaV3_UNG223550Cucumber (Chinese Long) v3cuccucB169
The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G004620Silver-seed gourdcarcucB0982
CsaV3_4G004620Cucurbita maxima (Rimu)cmacucB0847
CsaV3_4G004620Cucurbita moschata (Rifu)cmocucB0833
CsaV3_4G004620Cucurbita pepo (Zucchini)cpecucB0504
CsaV3_4G004620Watermelon (97103) v2cucwmbB268