Carg05810 (gene) Silver-seed gourd

Overview
NameCarg05810
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPolyadenylate-binding protein 2
LocationCucurbita_argyrosperma_scaffold_033 : 1182772 .. 1183885 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACTTTACCATTTTATGTTTAAAGCTCTGTTTCAAGAATCAAAATCCTTGTGTTTGAAGGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACTGATAAATTTGGACAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGATGCTGTTCAAGAGGCCCTCCTTCTGAATGAATCGGAGCTTCATGGACGGCAACTGAAGGTGAGTCTTTCATTTTTCTCGGTCTTCGCCGAAAAAAAGAAGAAAAAAAAAGTTTCTGGAAGGAGAAACCTTTCTGGTTCATTGGTTTGGTATGAATGTAGAGATATCATGCCTTTATTATTTGCTGCCATGATCCATTCCAGGTTTTGCCCAAGAGAACAAATGTTCCTGGTATGAAGCAATATCGTCCCCGTCGTTATAACCCGTACGTGGGTTTTAGGAGACCGTATGCACCACCGTATTTTTATTCACCTTACGGCTACGGGTACAGTTTCGAGTGTCTTAATCTTCCATCACCATGAAATACTTGATTTATCTAATTTCTTAATCCTTCAATATCCCATTGCAGGAAGATGCCTCGGTTTCGAAGATCGATGAGGTACATGCCCTACTATTAGATGCTAACATTGTTCAGCTTTGATAAGTTTGTCCTGAACGAGTTGTTGGTACTTGCTTCTGATCCTTGAGAGAACACAGAAATGATGTATGTCTATATTTACAATCTGTTATTGCCTAAACTATCTTGGAAATTCACAATAATCAATTACTTTGCCGTTTCAATAAGCTTTTGCTCTGACACTCTCAGAATCCATTGCCCAGCTTTAAGTCGATAGAGCCTTTAGACGACGTTTGAGAATGGTTCTTGTAAATACTTACAGGAAAAAAGTTAAGCCCATTGTGTGAACTGAGCTGGATATGATGCTTGTCTGTGCTGAAGAACTTGGAATTGAACCATACTTAATGTAACATGGGTAAGATTTGTATTTCCCATAAGTTTTCTTTGTTTTCAGTTATATCGGCAAATGTTTGCGGGCAGTTTGCATGCACAGGAAAAAGCTATCAACTAGTACCTACAAAT

mRNA sequence

ATGGCACTTTACCATTTTATGTTTAAAGCTCTGTTTCAAGAATCAAAATCCTTGTGTTTGAAGGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACTGATAAATTTGGACAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGATGCTGTTCAAGAGGCCCTCCTTCTGAATGAATCGGAGCTTCATGGACGGCAACTGAAGGTTTTGCCCAAGAGAACAAATGTTCCTGGTATGAAGCAATATCGTCCCCGTCGTTATAACCCGTACGTGGGTTTTAGGAGACCGTATGCACCACCGTATTTTTATTCACCTTACGGCTACGGGAAGATGCCTCGGTTTCGAAGATCGATGAGGTACATGCCCTACTATTAGATGCTAACATTGTTCAGCTTTGATAAGTTTGTCCTGAACGAGTTGTTGGTACTTGCTTCTGATCCTTGAGAGAACACAGAAATGATGTATGTCTATATTTACAATCTGTTATTGCCTAAACTATCTTGGAAATTCACAATAATCAATTACTTTGCCGTTTCAATAAGCTTTTGCTCTGACACTCTCAGAATCCATTGCCCAGCTTTAAGTCGATAGAGCCTTTAGACGACGTTTGAGAATGGTTCTTGTAAATACTTACAGGAAAAAAGTTAAGCCCATTGTGTGAACTGAGCTGGATATGATGCTTGTCTGTGCTGAAGAACTTGGAATTGAACCATACTTAATGTAACATGGGTAAGATTTGTATTTCCCATAAGTTTTCTTTGTTTTCAGTTATATCGGCAAATGTTTGCGGGCAGTTTGCATGCACAGGAAAAAGCTATCAACTAGTACCTACAAAT

Coding sequence (CDS)

ATGGCACTTTACCATTTTATGTTTAAAGCTCTGTTTCAAGAATCAAAATCCTTGTGTTTGAAGGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACTGATAAATTTGGACAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGATGCTGTTCAAGAGGCCCTCCTTCTGAATGAATCGGAGCTTCATGGACGGCAACTGAAGGTTTTGCCCAAGAGAACAAATGTTCCTGGTATGAAGCAATATCGTCCCCGTCGTTATAACCCGTACGTGGGTTTTAGGAGACCGTATGCACCACCGTATTTTTATTCACCTTACGGCTACGGGAAGATGCCTCGGTTTCGAAGATCGATGAGGTACATGCCCTACTATTAG

Protein sequence

MALYHFMFKALFQESKSLCLKVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Homology
[Close]
BLAST of Carg05810 vs. NCBI nr
Match: XP_022929268.1 (polyadenylate-binding protein 2-like [Cucurbita moschata] >XP_022929269.1 polyadenylate-binding protein 2-like [Cucurbita moschata] >XP_022985028.1 polyadenylate-binding protein 2-like [Cucurbita maxima] >XP_023553273.1 polyadenylate-binding protein 2-like [Cucurbita pepo subsp. pepo] >XP_023553274.1 polyadenylate-binding protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.1 bits (645), Expect = 5.7e-64
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG
Sbjct: 93  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 152

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 141
           RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 153 RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 212

[Close]
BLAST of Carg05810 vs. NCBI nr
Match: XP_004146877.1 (PREDICTED: polyadenylate-binding protein 2 [Cucumis sativus])

HSP 1 Score: 247.3 bits (630), Expect = 3.1e-62
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEA+AVQEAL+LNESELHG
Sbjct: 93  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHG 152

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 141
           RQLKVLPKRTNVPGMKQYR RRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 153 RQLKVLPKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 212

[Close]
BLAST of Carg05810 vs. NCBI nr
Match: XP_008453810.1 (PREDICTED: polyadenylate-binding protein 2 isoform X2 [Cucumis melo])

HSP 1 Score: 247.3 bits (630), Expect = 3.1e-62
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEA+AVQEAL+LNESELHG
Sbjct: 20  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHG 79

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 141
           RQLKVLPKRTNVPGMKQYR RRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 80  RQLKVLPKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 139

[Close]
BLAST of Carg05810 vs. NCBI nr
Match: KGN53209.1 (hypothetical protein Csa_4G026860 [Cucumis sativus])

HSP 1 Score: 247.3 bits (630), Expect = 3.1e-62
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEA+AVQEAL+LNESELHG
Sbjct: 115 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHG 174

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 141
           RQLKVLPKRTNVPGMKQYR RRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 175 RQLKVLPKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

[Close]
BLAST of Carg05810 vs. NCBI nr
Match: XP_008453809.2 (PREDICTED: polyadenylate-binding protein 2 isoform X1 [Cucumis melo])

HSP 1 Score: 247.3 bits (630), Expect = 3.1e-62
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEA+AVQEAL+LNESELHG
Sbjct: 115 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHG 174

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 141
           RQLKVLPKRTNVPGMKQYR RRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 175 RQLKVLPKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

[Close]
BLAST of Carg05810 vs. TAIR10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 212.6 bits (540), Expect = 1.6e-55
Identity = 102/121 (84.30%), Postives = 108/121 (89.26%), Query Frame = 0 

Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQ HFQ+CGTVNRVTIL DKFGQPKGFAYVEF+E +AVQEAL LNESELHG
Sbjct: 96  VDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHG 155

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMP 141
           RQLKV PKRTNVPGMKQY P R+NP +G  FRRP+ PPYFYSPYGYGK PRFRR MRYMP
Sbjct: 156 RQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMP 215

[Close]
BLAST of Carg05810 vs. TAIR10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 211.1 bits (536), Expect = 4.5e-55
Identity = 101/121 (83.47%), Postives = 110/121 (90.91%), Query Frame = 0 

Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQQHFQ+CGTV+RVTILTDKFGQPKGFAYVEF+E +AVQEAL LNESELHG
Sbjct: 99  VDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHG 158

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMP 141
           RQLKVL KRTNVPG+KQ+R RR+NPY+G  FRRP+  PY YSPYGYGK PRFRR MRYMP
Sbjct: 159 RQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMRYMP 218

[Close]
BLAST of Carg05810 vs. TAIR10
Match: AT5G51120.2 (polyadenylate-binding protein 1)

HSP 1 Score: 178.7 bits (452), Expect = 2.5e-45
Identity = 92/130 (70.77%), Postives = 106/130 (81.54%), Query Frame = 0 

Query: 14  ESKSLCL-KVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEAL 73
           +S+S+ +  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEF+E +AVQ +L
Sbjct: 139 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSL 198

Query: 74  LLNESELHGRQLKVLPKRTNVPGMKQY--RPRRYNPYVGFRRPYAPPYFYSPYGYGKMPR 133
           +LNESELHGRQ+KV  KRTNVPGM+Q+  R R + P  GF  P  P  FY PY YG++PR
Sbjct: 199 ILNESELHGRQIKVSAKRTNVPGMRQFRGRGRPFRPMRGF-MPGVP--FYPPYAYGRVPR 258

Query: 134 FRRSMRYMPY 141
           FRR MRY PY
Sbjct: 259 FRRPMRYRPY 265

[Close]
BLAST of Carg05810 vs. TAIR10
Match: AT3G55460.1 (SC35-like splicing factor 30)

HSP 1 Score: 48.9 bits (115), Expect = 3.0e-06
Identity = 26/64 (40.62%), Postives = 40/64 (62.50%), Query Frame = 0 

Query: 26  CTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEA-DAVQEALLLNESELHGRQ 85
           C PEE+++ F+  G V  V I  D + GQP+GFA+VEF++A DA +    +N     GR+
Sbjct: 58  CRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGRE 117

Query: 86  LKVL 88
           + V+
Sbjct: 118 ITVV 121

[Close]
BLAST of Carg05810 vs. TAIR10
Match: AT3G12640.1 (RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 47.4 bits (111), Expect = 8.6e-06
Identity = 34/99 (34.34%), Postives = 49/99 (49.49%), Query Frame = 0 

Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFLEADAVQEALLLNESELH 81
           V +  T + + +HF   G V +  I+TD   GQP G AY+EF   +A + AL L+ +   
Sbjct: 487 VHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALSLDGTSFM 546

Query: 82  GRQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYF 120
            R LK++ K +N  G  Q      +   G R   AP YF
Sbjct: 547 SRILKIV-KGSN--GQNQEAASSMSWSRGGRFTRAPSYF 582

[Close]
BLAST of Carg05810 vs. Swiss-Prot
Match: sp|Q9LX90|PABN3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.8e-54
Identity = 102/121 (84.30%), Postives = 108/121 (89.26%), Query Frame = 0 

Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQ HFQ+CGTVNRVTIL DKFGQPKGFAYVEF+E +AVQEAL LNESELHG
Sbjct: 96  VDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHG 155

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMP 141
           RQLKV PKRTNVPGMKQY P R+NP +G  FRRP+ PPYFYSPYGYGK PRFRR MRYMP
Sbjct: 156 RQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMP 215

[Close]
BLAST of Carg05810 vs. Swiss-Prot
Match: sp|Q9FJN9|PABN2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 8.1e-54
Identity = 101/121 (83.47%), Postives = 110/121 (90.91%), Query Frame = 0 

Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQQHFQ+CGTV+RVTILTDKFGQPKGFAYVEF+E +AVQEAL LNESELHG
Sbjct: 99  VDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHG 158

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMP 141
           RQLKVL KRTNVPG+KQ+R RR+NPY+G  FRRP+  PY YSPYGYGK PRFRR MRYMP
Sbjct: 159 RQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMRYMP 218

[Close]
BLAST of Carg05810 vs. Swiss-Prot
Match: sp|Q93VI4|PABN1_ARATH (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 4.5e-44
Identity = 92/130 (70.77%), Postives = 106/130 (81.54%), Query Frame = 0 

Query: 14  ESKSLCL-KVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEAL 73
           +S+S+ +  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEF+E +AVQ +L
Sbjct: 101 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSL 160

Query: 74  LLNESELHGRQLKVLPKRTNVPGMKQY--RPRRYNPYVGFRRPYAPPYFYSPYGYGKMPR 133
           +LNESELHGRQ+KV  KRTNVPGM+Q+  R R + P  GF  P  P  FY PY YG++PR
Sbjct: 161 ILNESELHGRQIKVSAKRTNVPGMRQFRGRGRPFRPMRGF-MPGVP--FYPPYAYGRVPR 220

Query: 134 FRRSMRYMPY 141
           FRR MRY PY
Sbjct: 221 FRRPMRYRPY 227

[Close]
BLAST of Carg05810 vs. Swiss-Prot
Match: sp|O14327|PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-23
Identity = 55/78 (70.51%), Postives = 60/78 (76.92%), Query Frame = 0 

Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEADAVQEALLLNESELH 81
           VDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E   V  ALLLN S LH
Sbjct: 62  VDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLH 121

Query: 82  GRQLKVLPKRTNVPGMKQ 99
            R LKV PKRTNVPGM +
Sbjct: 122 ERPLKVTPKRTNVPGMSR 139

[Close]
BLAST of Carg05810 vs. Swiss-Prot
Match: sp|Q28165|PABP2_BOVIN (Polyadenylate-binding protein 2 OS=Bos taurus OX=9913 GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 98.6 bits (244), Expect = 5.9e-20
Identity = 59/129 (45.74%), Postives = 76/129 (58.91%), Query Frame = 0 

Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEADAVQEALLLNESELH 81
           VDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   
Sbjct: 179 VDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFR 238

Query: 82  GRQLKVLPKRTNVPGMK---------QYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRF 141
           GRQ+KV+PKRTN PG+          +YR R  N Y   R  +   +   P G     R 
Sbjct: 239 GRQIKVIPKRTNRPGISTTDRGFPRARYRARTTN-YNSSRSRFYSGFNSRPRGRVYRGRA 298

[Close]
BLAST of Carg05810 vs. TrEMBL
Match: tr|A0A1S3BX92|A0A1S3BX92_CUCME (polyadenylate-binding protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494425 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 2.1e-62
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEA+AVQEAL+LNESELHG
Sbjct: 115 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHG 174

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 141
           RQLKVLPKRTNVPGMKQYR RRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 175 RQLKVLPKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

[Close]
BLAST of Carg05810 vs. TrEMBL
Match: tr|A0A1S3BX58|A0A1S3BX58_CUCME (polyadenylate-binding protein 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494425 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 2.1e-62
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEA+AVQEAL+LNESELHG
Sbjct: 20  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHG 79

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 141
           RQLKVLPKRTNVPGMKQYR RRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 80  RQLKVLPKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 139

[Close]
BLAST of Carg05810 vs. TrEMBL
Match: tr|A0A0A0KWF2|A0A0A0KWF2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026860 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 2.1e-62
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEA+AVQEAL+LNESELHG
Sbjct: 115 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHG 174

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 141
           RQLKVLPKRTNVPGMKQYR RRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 175 RQLKVLPKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

[Close]
BLAST of Carg05810 vs. TrEMBL
Match: tr|A0A2P2JJY8|A0A2P2JJY8_RHIMU (Polyadenylate-binding protein 3-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 2.1e-59
Identity = 112/124 (90.32%), Postives = 119/124 (95.97%), Query Frame = 0 

Query: 20  LKVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESEL 79
           ++VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLE +AVQEALLLNESEL
Sbjct: 56  MQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEVEAVQEALLLNESEL 115

Query: 80  HGRQLKVLPKRTNVPGMKQYRPRRYNPYVGF--RRPYAPPYFYSPYGYGKMPRFRRSMRY 139
           HGRQLKVLPKRTNVPGMKQYRPRR+NPY+G+  RRPY PPYFYSPYGYGK+PRFRR MRY
Sbjct: 116 HGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRPRRPYVPPYFYSPYGYGKVPRFRRPMRY 175

Query: 140 MPYY 142
           MPYY
Sbjct: 176 MPYY 179

[Close]
BLAST of Carg05810 vs. TrEMBL
Match: tr|A0A2H5NGB1|A0A2H5NGB1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_038790 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 4.8e-59
Identity = 115/138 (83.33%), Postives = 122/138 (88.41%), Query Frame = 0 

Query: 6   FMFKALFQESKSLCLKVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEA 65
           F F + +     L  +VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLE 
Sbjct: 123 FDFMSHYDRRVVLIPQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEI 182

Query: 66  DAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVGF--RRPYAPPYFYSPY 125
           DAVQEAL LNESELHGRQLKVLPKRTNVPGMKQYRPRR+NPY+G+  RRPY PPYFYSPY
Sbjct: 183 DAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGRRPYVPPYFYSPY 242

Query: 126 GYGKMPRFRRSMRYMPYY 142
           GYGK+PRFRR MRYMPYY
Sbjct: 243 GYGKVPRFRRPMRYMPYY 260

The following BLAST results are available for this feature:
BLAST of Carg05810 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022929268.15.7e-64100.00polyadenylate-binding protein 2-like [Cucurbita moschata] >XP_022929269.1 polyad... [more]
XP_004146877.13.1e-6297.50PREDICTED: polyadenylate-binding protein 2 [Cucumis sativus][more]
XP_008453810.13.1e-6297.50PREDICTED: polyadenylate-binding protein 2 isoform X2 [Cucumis melo][more]
KGN53209.13.1e-6297.50hypothetical protein Csa_4G026860 [Cucumis sativus][more]
XP_008453809.23.1e-6297.50PREDICTED: polyadenylate-binding protein 2 isoform X1 [Cucumis melo][more]
BLAST of Carg05810 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G10350.11.6e-5584.30RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G65260.14.5e-5583.47RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G51120.22.5e-4570.77polyadenylate-binding protein 1[more]
AT3G55460.13.0e-0640.63SC35-like splicing factor 30[more]
AT3G12640.18.6e-0634.34RNA binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Carg05810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LX90|PABN3_ARATH2.8e-5484.30Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV... [more]
sp|Q9FJN9|PABN2_ARATH8.1e-5483.47Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV... [more]
sp|Q93VI4|PABN1_ARATH4.5e-4470.77Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV... [more]
sp|O14327|PAB2_SCHPO1.5e-2370.51Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ... [more]
sp|Q28165|PABP2_BOVIN5.9e-2045.74Polyadenylate-binding protein 2 OS=Bos taurus OX=9913 GN=PABPN1 PE=1 SV=3[more]
BLAST of Carg05810 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BX92|A0A1S3BX92_CUCME2.1e-6297.50polyadenylate-binding protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034944... [more]
tr|A0A1S3BX58|A0A1S3BX58_CUCME2.1e-6297.50polyadenylate-binding protein 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034944... [more]
tr|A0A0A0KWF2|A0A0A0KWF2_CUCSA2.1e-6297.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026860 PE=4 SV=1[more]
tr|A0A2P2JJY8|A0A2P2JJY8_RHIMU2.1e-5990.32Polyadenylate-binding protein 3-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
tr|A0A2H5NGB1|A0A2H5NGB1_CITUN4.8e-5983.33Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_038790 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05810-RACarg05810-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 17..87
e-value: 8.1E-14
score: 61.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 23..85
e-value: 4.6E-13
score: 48.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 9..91
score: 12.987
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 17..95
e-value: 9.2E-21
score: 75.9
NoneNo IPR availablePANTHERPTHR43987:SF1SUBFAMILY NOT NAMEDcoord: 16..141
NoneNo IPR availablePANTHERPTHR43987FAMILY NOT NAMEDcoord: 16..141
NoneNo IPR availableCDDcd12306RRM_II_PABPscoord: 22..87
e-value: 8.61992E-43
score: 137.037
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 22..115

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg05810Cla014132Watermelon (97103) v1carwmB1022
Carg05810Cla010672Watermelon (97103) v1carwmB1019
Carg05810Csa4G026860Cucumber (Chinese Long) v2carcuB1033
Carg05810MELO3C017602Melon (DHL92) v3.5.1carmeB0992
Carg05810ClCG07G017390Watermelon (Charleston Gray)carwcgB1000
Carg05810CSPI04G04520Wild cucumber (PI 183967)carcpiB1057
Carg05810Cucsa.093720Cucumber (Gy14) v1carcgyB1132
Carg05810CmaCh16G006980Cucurbita maxima (Rimu)carcmaB1409
Carg05810CmaCh07G005530Cucurbita maxima (Rimu)carcmaB1415
Carg05810CmoCh16G007570Cucurbita moschata (Rifu)carcmoB1366
Carg05810Lsi01G007850Bottle gourd (USVL1VR-Ls)carlsiB929
Carg05810Lsi03G009550Bottle gourd (USVL1VR-Ls)carlsiB932
Carg05810Cp4.1LG14g01130Cucurbita pepo (Zucchini)carcpeB1414
Carg05810CsGy4G004430Cucumber (Gy14) v2carcgybB1005
Carg05810MELO3C017602.2Melon (DHL92) v3.6.1carmedB1004
Carg05810CsaV3_UNG223550Cucumber (Chinese Long) v3carcucB1066
Carg05810CsaV3_4G004620Cucumber (Chinese Long) v3carcucB1063
Carg05810CsaV3_UNG158170Cucumber (Chinese Long) v3carcucB1064
Carg05810CsaV3_UNG128990Cucumber (Chinese Long) v3carcucB1065
Carg05810Cla97C10G192490Watermelon (97103) v2carwmbB1076
Carg05810Cla97C07G144430Watermelon (97103) v2carwmbB1085
Carg05810Bhi01G001954Wax gourdcarwgoB1193
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg05810Silver-seed gourdcarcarB431
Carg05810Silver-seed gourdcarcarB646
Carg05810Cucurbita maxima (Rimu)carcmaB1414
Carg05810Cucurbita moschata (Rifu)carcmoB1371
Carg05810Cucurbita pepo (Zucchini)carcpeB1413
Carg05810Cucurbita pepo (Zucchini)carcpeB1417
Carg05810Cucurbita pepo (Zucchini)carcpeB1419
Carg05810Bottle gourd (USVL1VR-Ls)carlsiB935
Carg05810Watermelon (Charleston Gray)carwcgB0994
Carg05810Watermelon (97103) v2carwmbB1073
Carg05810Wax gourdcarwgoB1197