CmaCh16G006980 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G006980
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Polyadenylate-binding 2
Location	Cma_Chr16 : 3641636 .. 3644786 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGATTCTGTGCAGGCAGTTCTACGCATCGAGGAGATTTCTAGAAACGAAGGCGGAATTGCGAGCGAAAGGGAGATGGAGGAAGAAGAGCACGAGGTATACGGTGGAGAGATCCCAGTTGAAGGGGAGATGGACGGAGACGTTGACATGTCAGTCGCCGACGACGACGCCGTCAAGGTTTCCATTCGTTCTCTCTTTCTGTTTCTCCTGCTTAGGAAAAAAAAAACGGAAGAAATAATTGTTGTGATTTTTGTTTCTTTGTTCTTTGTGATCGTGTATGCGTTTCAGGAGCTTGACGAGATGAAAAAGCGGTTGAAGGAGATGGAGGAGGAAGCAGCGGCTCTCCGAGAAATGCAGGCCAAGGTTGAAAAAGAAATGGGAGCCGTCCAAGGTCGTTTTCTTATGATTACGTGTTATTGTTTTCGTTTATTAAGCCTTTAGTAATGGAATTTCTGAATTTAATTGGTTTCGTTGCTGTGATATTGTAAGCGATATGGAAGAAACCATGATTTTGGATGATATGGGTGAACAAATTATGATTGTGATTTTAGTGATATTTACCTGTCATAGTTTCGCTGATTTGGATGAACAAATTATGATTGTGATTTAAGTGATATTTACCTGTCATTGTTTCGCTGATTTGGATGAACAAATTATGATTGTGGTTTTTGACAGAAACCAAAATTTAGTTATCCGATCATGTTGGTTGGAAGTTTATTATTTATATCTATGATTGTTATGCTTGATGCAGATCCTGCTGGTACATCAACTAGTCAAGCAGGCAAGGAGGAGACTGACTCACGATCTGTATTTGTCGGCAATGTGAGAAGAAAAATGTCCCTACCGATGTTCTTTAGATTCGAGAAGCTTTTTAGTTGTTTGATCTTTGAAAAAATGTTGTTGAAATGAGAAATTTCTGCAAAAAATTCAAAAAGAAGGAAAGAAAGAAAGAAGAAATTTGTGAATGATGGTTGAAAGACTGGTTTAATGGGAAAAATCAGTGAGAAAAAGAAAGAAGGAAAAAAAAAATCTGAAATATCAAAAAACCATTAGTGAATTGTAGCATTTAGGGAAAGGGACTATTTCTAGTTGAACTTATGCTGTTGAAAGGCATGTGCTCTGGAGGCTGGAACTGTTAGATGTGGAATAACGATGTCGATGGTTCAGCTACAGTATGCTAGGGGTGTCTCCGAGGAAGCAGAGGCATTGTCATTTGTGTCTCACAAATGAGCCATTAAGGACAAGGCGAGGGTGTAAGATCATCGCTTTTTTGTGGCATTATTTTTCAAGTTTGTGCTTCGTTTGACCCAGTTAGACCAAGTATAGGATTTTAATGCATGCATTTCCCCTTAGCCAGTTACCTCTGAAAGAACTAAGAAGATATTAACTTATTAATCTAAGACTTTTCCTTTTAGTTAGAAACTCAACGTGTCATCTTCGTGCAGAGAGTCCATGCTTATTTCATTGTTAGATTGCAAAACTATGTGGACTTATAAGATTAATGTGGGAAATCTTCTACGTTGAAGAATAAACACCTCATTCTCAATCATTTCTAATATAGAACTGTTTTGAACTTCTTGTAATGGATTTCTTAAGCATGCATCTGTTATGTGATTCTCATGCCTCTAATTGAATGATACTTCAGTGTTACATATGTTCATTTAAACATATGATTTGGATCTTTGTGGCAACTCGGTGATTTGGTTAGAGTTATTTTTCTTGGCATAGTTTATGATTCTCTTCCCAGCCCATTGGAAGTTTGTTACTTCTTAATGTTGCTCTGGTGTATCTTATCCCAATACTTTGTTGATTGTGTGTGATAAAGTGTTCTTCTCTCTTCTTCCCTTTTTTTTTTCTTTTATTTGTACAAAGCTTCTTGATTTATAACTTTCTTAATCATAAAAACATACAAACTTAATTCTTGCTGTCTGATCTTTTCTCAAAGGAATTGCTAATATATTTATGTAAAGAACAGAGAACTCATAGAACTTTCTATTCATTGTTGATGGCACTTTACCATTTTATGTTTAAAGCTCTGTTTCAAGAATCGAAATCCTTGTGTTTGAAGGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACCATTTTAACTGATAAATTTGGTCAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGATGCTGTTCAAGAGGCCCTCCTTCTGAATGAATCAGAGCTTCATGGACGGCAACTGAAGGTGAGTCTTTCATTTTTCTCGGTCTTCGCCAAAAAAAAGAAAAAAAAAAAGTTTCTGGCTCATTGGTTTGGTATGAATGTAGAGATATCATGCCTTTATTATTTGCTGCCATGATCCATTCCAGGTTTTGCCCAAGAGAACAAATGTTCCTGGCATGAAGCAATATCGTCCCCGTCGTTATAACCCATACGTGGGTTTTAGGAGACCTTATGCACCACCGTATTTTTATTCACCTTACGGCTATGGGTACAGTTTCGAGTGTCTTAATCCTGCATCACCATGAAATTCTTGATTTATCTAATTTCTTGATCCTTCAATATCCCATTGCAGGAAGATGCCTCGGTTTCGAAGATCGATGAGGTACATGCCCTACTATTAGATGCTAACATTGTTCAGGTTTGATAAGTTTGTCCTGAACGAGTTGTTGGTACTTGCTTCTGATCCTTGAGAGAACACAGAAATGATGTATGTCTATATTTACAATCTGTTATTGCCTAAACTGTCTTGGAAATTCACAATAATCAATTACTTTGCCGTTTCAATAAGCTTTTGCTCTATGACACTCCCAGAATCCATTGCCCAGCTTTAAGTCGATAGAGCTTTTAGACGACGTATGAGAATGATTCTTGTAAATACTTATAGGAAAAAAGTTAAGCCCATTGTCAGAACTGAGCTGCATATGATGCTTGTCTGTGCGGAAGAACTTGGAATTGAACCATGCTTAATGTAACATGGGTAAGATTTATATTTCCCACAAGTTTTTTTGTTTTCAATTATATCGGCAAATGTGGGGCAGTTTGCATGCACAGGAAAACTTGTAAGGGCTGGGGTGTACATGGTCTGGGTTGAATTGAGCTGGGGTGTACATGGTCTGGGTTGAATTGAGTTGGG

mRNA sequence

TTCGATTCTGTGCAGGCAGTTCTACGCATCGAGGAGATTTCTAGAAACGAAGGCGGAATTGCGAGCGAAAGGGAGATGGAGGAAGAAGAGCACGAGGTATACGGTGGAGAGATCCCAGTTGAAGGGGAGATGGACGGAGACGTTGACATGTCAGTCGCCGACGACGACGCCGTCAAGGAGCTTGACGAGATGAAAAAGCGGTTGAAGGAGATGGAGGAGGAAGCAGCGGCTCTCCGAGAAATGCAGGCCAAGGTTGAAAAAGAAATGGGAGCCGTCCAAGATCCTGCTGGTACATCAACTAGTCAAGCAGGCAAGGAGGAGACTGACTCACGATCTGTATTTGTCGGCAATGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACCATTTTAACTGATAAATTTGGTCAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGATGCTGTTCAAGAGGCCCTCCTTCTGAATGAATCAGAGCTTCATGGACGGCAACTGAAGGTTTTGCCCAAGAGAACAAATGTTCCTGGCATGAAGCAATATCGTCCCCGTCGTTATAACCCATACGTGGGTTTTAGGAGACCTTATGCACCACCGTATTTTTATTCACCTTACGGCTATGGGAAGATGCCTCGGTTTCGAAGATCGATGAGGTACATGCCCTACTATTAGATGCTAACATTGTTCAGGTTTGATAAGTTTGTCCTGAACGAGTTGTTGGTACTTGCTTCTGATCCTTGAGAGAACACAGAAATGATGTATGTCTATATTTACAATCTGTTATTGCCTAAACTGTCTTGGAAATTCACAATAATCAATTACTTTGCCGTTTCAATAAGCTTTTGCTCTATGACACTCCCAGAATCCATTGCCCAGCTTTAAGTCGATAGAGCTTTTAGACGACGTATGAGAATGATTCTTGTAAATACTTATAGGAAAAAAGTTAAGCCCATTGTCAGAACTGAGCTGCATATGATGCTTGTCTGTGCGGAAGAACTTGGAATTGAACCATGCTTAATGTAACATGGGTAAGATTTATATTTCCCACAAGTTTTTTTGTTTTCAATTATATCGGCAAATGTGGGGCAGTTTGCATGCACAGGAAAACTTGTAAGGGCTGGGGTGTACATGGTCTGGGTTGAATTGAGCTGGGGTGTACATGGTCTGGGTTGAATTGAGTTGGG

Coding sequence (CDS)

TTCGATTCTGTGCAGGCAGTTCTACGCATCGAGGAGATTTCTAGAAACGAAGGCGGAATTGCGAGCGAAAGGGAGATGGAGGAAGAAGAGCACGAGGTATACGGTGGAGAGATCCCAGTTGAAGGGGAGATGGACGGAGACGTTGACATGTCAGTCGCCGACGACGACGCCGTCAAGGAGCTTGACGAGATGAAAAAGCGGTTGAAGGAGATGGAGGAGGAAGCAGCGGCTCTCCGAGAAATGCAGGCCAAGGTTGAAAAAGAAATGGGAGCCGTCCAAGATCCTGCTGGTACATCAACTAGTCAAGCAGGCAAGGAGGAGACTGACTCACGATCTGTATTTGTCGGCAATGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACCATTTTAACTGATAAATTTGGTCAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGATGCTGTTCAAGAGGCCCTCCTTCTGAATGAATCAGAGCTTCATGGACGGCAACTGAAGGTTTTGCCCAAGAGAACAAATGTTCCTGGCATGAAGCAATATCGTCCCCGTCGTTATAACCCATACGTGGGTTTTAGGAGACCTTATGCACCACCGTATTTTTATTCACCTTACGGCTATGGGAAGATGCCTCGGTTTCGAAGATCGATGAGGTACATGCCCTACTATTAG

Protein sequence

FDSVQAVLRIEEISRNEGGIASEREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY

Homology

[Close]

BLAST of CmaCh16G006980 vs. Swiss-Prot
Match: PABN2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PABN2 PE=1 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 7.3e-92
Identity = 179/220 (81.36%), Postives = 194/220 (88.18%), Query Frame = 1


Query: 26  MEEEEHEVYGGEIPVEGEMDGDV-------DMSVADDDAVKELDEMKKRLKEMEEEAAAL 85
           MEEEEHEVYGGEIP  GEMDGD+       DM+ ADDDAVKELDEMKKRLKEME+EAAAL
Sbjct: 1   MEEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAAL 60

Query: 86  REMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVN 145
           REMQAKVEKEMGA QDPA  + +QAGKEE D+RSVFVGNVDYACTPEEVQQHFQ+CGTV+
Sbjct: 61  REMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVH 120

Query: 146 RVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPR 205
           RVTILTDKFGQPKGFAYVEF+E +AVQEAL LNESELHGRQLKVL KRTNVPG+KQ+R R
Sbjct: 121 RVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGR 180

Query: 206 RYNPYVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPY 237
           R+NPY+G  FRRP+  PY YSPYGYGK PRFRR MRYMPY
Sbjct: 181 RFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMRYMPY 219

[Close]

BLAST of CmaCh16G006980 vs. Swiss-Prot
Match: PABN3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PABN3 PE=1 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 5.2e-90
Identity = 173/216 (80.09%), Postives = 187/216 (86.57%), Query Frame = 1


Query: 26  MEEEEHEVYGGEIPVEGEMD---GDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQ 85
           MEEEEHEVYGGEIP  G+ D    D+DMS AD+DAV EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 86  AKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 145
           AKVEKEMGA QDPA  + +Q GKEE D+RSV+VGNVDYACTPEEVQ HFQ+CGTVNRVTI
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120

Query: 146 LTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNP 205
           L DKFGQPKGFAYVEF+E +AVQEAL LNESELHGRQLKV PKRTNVPGMKQY P R+NP
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNP 180

Query: 206 YVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPY 237
            +G  FRRP+ PPYFYSPYGYGK PRFRR MRYMPY
Sbjct: 181 SMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216

[Close]

BLAST of CmaCh16G006980 vs. Swiss-Prot
Match: PABN1_ARATH (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana GN=PABN1 PE=1 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 6.7e-69
Identity = 149/227 (65.64%), Postives = 175/227 (77.09%), Query Frame = 1


Query: 27  EEEEHEVYGGEIPVE--GEMD-------GDVDMSVADDDAV------KELDEMKKRLKEM 86
           +E+EHEVYGGEIP E  GEMD       G  + + A D+ +      ++L++MKKR+KE+
Sbjct: 5   DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 87  EEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHF 146
           EEEA ALREMQAK EK+MGA QDP+G   S A KEE DSRS++VGNVDYACTPEEVQQHF
Sbjct: 65  EEEAGALREMQAKAEKDMGASQDPSG-GVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHF 124

Query: 147 QSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPG 206
           QSCGTVNRVTILTDKFGQPKGFAYVEF+E +AVQ +L+LNESELHGRQ+KV  KRTNVPG
Sbjct: 125 QSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPG 184

Query: 207 MKQY--RPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPY 237
           M+Q+  R R + P  GF  P  P  FY PY YG++PRFRR MRY PY
Sbjct: 185 MRQFRGRGRPFRPMRGF-MPGVP--FYPPYAYGRVPRFRRPMRYRPY 227

[Close]

BLAST of CmaCh16G006980 vs. Swiss-Prot
Match: PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab2 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.1e-34
Identity = 87/152 (57.24%), Postives = 106/152 (69.74%), Query Frame = 1


Query: 52  VADDDAV----KELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEE 111
           ++D DA+    KEL EMK+R+ EME EAA LR MQ +++ E  A+++          KE 
Sbjct: 1   MSDQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRND---------KES 60

Query: 112 TDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEADAVQE 171
            D++SV+VGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E   V  
Sbjct: 61  IDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPN 120

Query: 172 ALLLNESELHGRQLKVLPKRTNVPGMKQYRPR 199
           ALLLN S LH R LKV PKRTNVPGM + R R
Sbjct: 121 ALLLNGSMLHERPLKVTPKRTNVPGMSRGRGR 143

[Close]

BLAST of CmaCh16G006980 vs. Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.5e-31
Identity = 101/234 (43.16%), Postives = 133/234 (56.84%), Query Frame = 1


Query: 18  GGIASEREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAA 77
           GG     E+E+EE E    E P  GE+ GD   ++ D     EL+ +K R++EMEEEA  
Sbjct: 78  GGAGGLEELEDEELEE---EEP--GELTGD--QTIEDP----ELEAIKARVREMEEEAEK 137

Query: 78  LREMQAKVEKEMGAVQDPAGTST---SQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSC 137
           L+E+Q +VEK+M     P        S   K E D+RS++VGNVDY  T EE++ HF  C
Sbjct: 138 LKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGC 197

Query: 138 GTVNRVTILTDKF-GQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMK 197
           G+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+ 
Sbjct: 198 GSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS 257

Query: 198 ---------QYRPR--RYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPY 237
                    +YR R   Y+    F   Y P     P G     R R +  Y PY
Sbjct: 258 TTDRGFPRARYRARASSYSSRSRFYSGYTP----RPRGRVYRGRARATSWYTPY 296

[Close]

BLAST of CmaCh16G006980 vs. TrEMBL
Match: A0A0A0KWF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026860 PE=4 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 1.9e-115
Identity = 216/227 (95.15%), Postives = 221/227 (97.36%), Query Frame = 1


Query: 11  EEISRNEGGIASEREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKE 70
           EEISRN+ GI SER+MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDEMKKRLKE
Sbjct: 8   EEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKE 67

Query: 71  MEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQH 130
           MEEEAAALREMQAKVEKEMGAVQDPAGTS SQAGKEETDSRSVFVGNVDYACTPEEVQQH
Sbjct: 68  MEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQH 127

Query: 131 FQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVP 190
           FQSCGTVNRVTILTDKFGQPKGFAYVEFLEA+AVQEAL+LNESELHGRQLKVLPKRTNVP
Sbjct: 128 FQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVP 187

Query: 191 GMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 238
           GMKQYR RRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 188 GMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

[Close]

BLAST of CmaCh16G006980 vs. TrEMBL
Match: M5W001_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011157mg PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 1.1e-99
Identity = 193/221 (87.33%), Postives = 201/221 (90.95%), Query Frame = 1


Query: 26  MEEEEHEVYGGEIPVEGEMDGD-------VDMSVADDDAVKELDEMKKRLKEMEEEAAAL 85
           MEEEEHEVYGGEIP EGEM+GD       VDMS ADDDAVKELDEMKKRLKEMEEEAAAL
Sbjct: 1   MEEEEHEVYGGEIPDEGEMEGDIEAHHADVDMSTADDDAVKELDEMKKRLKEMEEEAAAL 60

Query: 86  REMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVN 145
           REMQAKVEKEMGAVQDPA  + SQA KEE D+RSVFVGNVDYACTPEEVQQHFQSCGTVN
Sbjct: 61  REMQAKVEKEMGAVQDPAAVAASQANKEEVDARSVFVGNVDYACTPEEVQQHFQSCGTVN 120

Query: 146 RVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPR 205
           RVTILTDKFGQPKGFAYVEFLE +AVQEAL+LNESELHGRQLKVLPKRTNVPGMKQYRPR
Sbjct: 121 RVTILTDKFGQPKGFAYVEFLETEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRPR 180

Query: 206 RYNPYVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 238
           R+NPY+G  FRRPY PPYFYSPYGYGK+PRFRR  RYMPYY
Sbjct: 181 RFNPYMGYRFRRPYVPPYFYSPYGYGKVPRFRRPARYMPYY 221

[Close]

BLAST of CmaCh16G006980 vs. TrEMBL
Match: A0A061DHW1_THECC (RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1 OS=Theobroma cacao GN=TCM_001066 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 1.9e-99
Identity = 191/221 (86.43%), Postives = 203/221 (91.86%), Query Frame = 1


Query: 26  MEEEEHEVYGGEIPVEGEMDGD-------VDMSVADDDAVKELDEMKKRLKEMEEEAAAL 85
           MEEEEHEVYGGEIP EGEM+GD       VDMS ADDDAVKELDEMKKRLKEME+EAAAL
Sbjct: 1   MEEEEHEVYGGEIPDEGEMEGDLDPHNADVDMSAADDDAVKELDEMKKRLKEMEDEAAAL 60

Query: 86  REMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVN 145
           REMQAKVEKEMGAVQDPAG + +QA +EE DSRSVFVGNVDYACTPEEVQQHFQSCGTVN
Sbjct: 61  REMQAKVEKEMGAVQDPAGAAANQASREEADSRSVFVGNVDYACTPEEVQQHFQSCGTVN 120

Query: 146 RVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPR 205
           RVTILTDK+GQPKGFAYVEFLEA+A+QEAL+LNESELHGRQLKVLPKRTNVPGMKQYRPR
Sbjct: 121 RVTILTDKYGQPKGFAYVEFLEAEAIQEALVLNESELHGRQLKVLPKRTNVPGMKQYRPR 180

Query: 206 RYNPYVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 238
           R+N Y+G  FRRPY PPYFYSPYGYGK+PRFRR MRYMPYY
Sbjct: 181 RFNAYMGYRFRRPYVPPYFYSPYGYGKVPRFRRPMRYMPYY 221

[Close]

BLAST of CmaCh16G006980 vs. TrEMBL
Match: K7KQW5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G176400 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 5.6e-99
Identity = 189/215 (87.91%), Postives = 203/215 (94.42%), Query Frame = 1


Query: 26  MEEEEHEVYGGEIPVEGEMDGDVDMSVADDD-AVKELDEMKKRLKEMEEEAAALREMQAK 85
           MEEEEHEVYGGEIP EGEM+GD+DMS ADDD AVKELDEMK+RLKEMEEEAAALREMQAK
Sbjct: 1   MEEEEHEVYGGEIPDEGEMEGDIDMSAADDDAAVKELDEMKRRLKEMEEEAAALREMQAK 60

Query: 86  VEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILT 145
           V+KE+G+VQDPA ++ SQA KEE DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILT
Sbjct: 61  VDKEIGSVQDPANSAASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILT 120

Query: 146 DKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYV 205
           DKFGQPKGFAYVEF+EA+AVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRR+NPY+
Sbjct: 121 DKFGQPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYM 180

Query: 206 --GFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 238
             GFRRPY PPYFYSPYGYGK+PRFRR  RYMPY+
Sbjct: 181 AYGFRRPYTPPYFYSPYGYGKVPRFRRPNRYMPYH 215

[Close]

BLAST of CmaCh16G006980 vs. TrEMBL
Match: A0A0D2QD31_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G040800 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 5.6e-99
Identity = 189/221 (85.52%), Postives = 204/221 (92.31%), Query Frame = 1


Query: 26  MEEEEHEVYGGEIPVEGEMDG-------DVDMSVADDDAVKELDEMKKRLKEMEEEAAAL 85
           M+EEEHEVYGGEIP EGEM+G       DVDMS AD+DAVKELDEMKKRLKEME+EAAAL
Sbjct: 1   MDEEEHEVYGGEIPDEGEMEGELDPQNADVDMSAADEDAVKELDEMKKRLKEMEDEAAAL 60

Query: 86  REMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVN 145
           REMQAKVEKEMGAVQDPAG + +QA KEE DSRSVFVGNVDYACTPEEVQQHFQSCGTVN
Sbjct: 61  REMQAKVEKEMGAVQDPAGATANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVN 120

Query: 146 RVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPR 205
           RVTILTDK+GQPKGFAYVEFLEA+AVQEAL+LNESELHGRQLKV+PKRTNVPGMKQYRPR
Sbjct: 121 RVTILTDKYGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVMPKRTNVPGMKQYRPR 180

Query: 206 RYNPYVGF--RRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 238
           R+NPY+G+  RRPY PPYFYSPYG+GK+PRFRR MRYMPYY
Sbjct: 181 RFNPYMGYRSRRPYVPPYFYSPYGFGKIPRFRRPMRYMPYY 221

[Close]

BLAST of CmaCh16G006980 vs. TAIR10
Match: AT5G65260.1 (AT5G65260.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 338.2 bits (866), Expect = 4.1e-93
Identity = 179/220 (81.36%), Postives = 194/220 (88.18%), Query Frame = 1


Query: 26  MEEEEHEVYGGEIPVEGEMDGDV-------DMSVADDDAVKELDEMKKRLKEMEEEAAAL 85
           MEEEEHEVYGGEIP  GEMDGD+       DM+ ADDDAVKELDEMKKRLKEME+EAAAL
Sbjct: 1   MEEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAAL 60

Query: 86  REMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVN 145
           REMQAKVEKEMGA QDPA  + +QAGKEE D+RSVFVGNVDYACTPEEVQQHFQ+CGTV+
Sbjct: 61  REMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVH 120

Query: 146 RVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPR 205
           RVTILTDKFGQPKGFAYVEF+E +AVQEAL LNESELHGRQLKVL KRTNVPG+KQ+R R
Sbjct: 121 RVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGR 180

Query: 206 RYNPYVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPY 237
           R+NPY+G  FRRP+  PY YSPYGYGK PRFRR MRYMPY
Sbjct: 181 RFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMRYMPY 219

[Close]

BLAST of CmaCh16G006980 vs. TAIR10
Match: AT5G10350.1 (AT5G10350.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 332.0 bits (850), Expect = 3.0e-91
Identity = 173/216 (80.09%), Postives = 187/216 (86.57%), Query Frame = 1


Query: 26  MEEEEHEVYGGEIPVEGEMD---GDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQ 85
           MEEEEHEVYGGEIP  G+ D    D+DMS AD+DAV EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 86  AKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 145
           AKVEKEMGA QDPA  + +Q GKEE D+RSV+VGNVDYACTPEEVQ HFQ+CGTVNRVTI
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120

Query: 146 LTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNP 205
           L DKFGQPKGFAYVEF+E +AVQEAL LNESELHGRQLKV PKRTNVPGMKQY P R+NP
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNP 180

Query: 206 YVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPY 237
            +G  FRRP+ PPYFYSPYGYGK PRFRR MRYMPY
Sbjct: 181 SMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216

[Close]

BLAST of CmaCh16G006980 vs. TAIR10
Match: AT5G51120.2 (AT5G51120.2 polyadenylate-binding protein 1)

HSP 1 Score: 231.9 bits (590), Expect = 4.2e-61
Identity = 144/264 (54.55%), Postives = 172/264 (65.15%), Query Frame = 1


Query: 27  EEEEHEVYGGEIPVE--GEMD-------GDVDMSVADDDAV------KELDEMKKRLKEM 86
           +E+EHEVYGGEIP E  GEMD       G  + + A D+ +      ++L++MKKR+KE+
Sbjct: 5   DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 87  EEEAAALREMQAKVEKEMGAVQ-----------------DPAGTSTSQAGK--------- 146
           EEEA ALREMQAK EK+MGA Q                 +    S + +           
Sbjct: 65  EEEAGALREMQAKAEKDMGASQGLKLVLLIMILLWVYILESFSESMNLSRNLLEFEYEKE 124

Query: 147 -----------EETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFA 206
                      EE DSRS++VGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFA
Sbjct: 125 IINSGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFA 184

Query: 207 YVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQY--RPRRYNPYVGFRRPYAP 237
           YVEF+E +AVQ +L+LNESELHGRQ+KV  KRTNVPGM+Q+  R R + P  GF  P  P
Sbjct: 185 YVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRGRGRPFRPMRGF-MPGVP 244

[Close]

BLAST of CmaCh16G006980 vs. TAIR10
Match: AT3G12640.1 (AT3G12640.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 62.0 bits (149), Expect = 5.7e-10
Identity = 45/134 (33.58%), Postives = 68/134 (50.75%), Query Frame = 1


Query: 83  AKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 142
           A V++E    +   GT ++    E+  SR++FV NV +  T + + +HF   G V +  I
Sbjct: 452 ASVKEESTTNKSVPGTLSTTRPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFI 511

Query: 143 LTD-KFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYN 202
           +TD   GQP G AY+EF   +A + AL L+ +    R LK++ K +N  G  Q      +
Sbjct: 512 VTDPATGQPSGSAYIEFTRKEAAENALSLDGTSFMSRILKIV-KGSN--GQNQEAASSMS 571

Query: 203 PYVGFRRPYAPPYF 216
              G R   AP YF
Sbjct: 572 WSRGGRFTRAPSYF 582

[Close]

BLAST of CmaCh16G006980 vs. TAIR10
Match: AT3G55460.1 (AT3G55460.1 SC35-like splicing factor 30)

HSP 1 Score: 54.7 bits (130), Expect = 9.1e-08
Identity = 30/82 (36.59%), Postives = 48/82 (58.54%), Query Frame = 1


Query: 104 GKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEA- 163
           G+  +   S+ V N+   C PEE+++ F+  G V  V I  D + GQP+GFA+VEF++A 
Sbjct: 40  GRRGSSHGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAY 99

Query: 164 DAVQEALLLNESELHGRQLKVL 184
           DA +    +N     GR++ V+
Sbjct: 100 DAGEAQRSMNRRSFAGREITVV 121

[Close]

BLAST of CmaCh16G006980 vs. NCBI nr
Match: gi|700198051|gb|KGN53209.1| (hypothetical protein Csa_4G026860 [Cucumis sativus])

HSP 1 Score: 423.3 bits (1087), Expect = 2.8e-115
Identity = 216/227 (95.15%), Postives = 221/227 (97.36%), Query Frame = 1


Query: 11  EEISRNEGGIASEREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKE 70
           EEISRN+ GI SER+MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDEMKKRLKE
Sbjct: 8   EEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKE 67

Query: 71  MEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQH 130
           MEEEAAALREMQAKVEKEMGAVQDPAGTS SQAGKEETDSRSVFVGNVDYACTPEEVQQH
Sbjct: 68  MEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQH 127

Query: 131 FQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVP 190
           FQSCGTVNRVTILTDKFGQPKGFAYVEFLEA+AVQEAL+LNESELHGRQLKVLPKRTNVP
Sbjct: 128 FQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVP 187

Query: 191 GMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 238
           GMKQYR RRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 188 GMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

[Close]

BLAST of CmaCh16G006980 vs. NCBI nr
Match: gi|449458283|ref|XP_004146877.1| (PREDICTED: polyadenylate-binding protein 2 [Cucumis sativus])

HSP 1 Score: 403.3 bits (1035), Expect = 3.0e-109
Identity = 205/212 (96.70%), Postives = 208/212 (98.11%), Query Frame = 1


Query: 26  MEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKV 85
           MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDEMKKRLKEMEEEAAALREMQAKV
Sbjct: 1   MEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60

Query: 86  EKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 145
           EKEMGAVQDPAGTS SQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 61  EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120

Query: 146 KFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVG 205
           KFGQPKGFAYVEFLEA+AVQEAL+LNESELHGRQLKVLPKRTNVPGMKQYR RRYNPYVG
Sbjct: 121 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 180

Query: 206 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 238
           FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 181 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 212

[Close]

BLAST of CmaCh16G006980 vs. NCBI nr
Match: gi|659107695|ref|XP_008453809.1| (PREDICTED: polyadenylate-binding protein 2 isoform X1 [Cucumis melo])

HSP 1 Score: 401.7 bits (1031), Expect = 8.6e-109
Identity = 204/212 (96.23%), Postives = 207/212 (97.64%), Query Frame = 1


Query: 26  MEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKV 85
           MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDEMKKRLKEMEEEAAALREMQAKV
Sbjct: 1   MEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60

Query: 86  EKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 145
           EKEMGAVQDPAGTS  QAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 61  EKEMGAVQDPAGTSAGQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120

Query: 146 KFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVG 205
           KFGQPKGFAYVEFLEA+AVQEAL+LNESELHGRQLKVLPKRTNVPGMKQYR RRYNPYVG
Sbjct: 121 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 180

Query: 206 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 238
           FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 181 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 212

[Close]

BLAST of CmaCh16G006980 vs. NCBI nr
Match: gi|802673497|ref|XP_012081610.1| (PREDICTED: polyadenylate-binding protein 2 [Jatropha curcas])

HSP 1 Score: 371.7 bits (953), Expect = 9.5e-100
Identity = 193/218 (88.53%), Postives = 203/218 (93.12%), Query Frame = 1


Query: 26  MEEEEHEVYGGEIP-VEGEMD---GDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREM 85
           MEEEEHEVYGGEIP VEG+MD    DVDM+ ADDDAVKELDEMKKRLKEMEEEAAALREM
Sbjct: 1   MEEEEHEVYGGEIPDVEGDMDPHNADVDMAAADDDAVKELDEMKKRLKEMEEEAAALREM 60

Query: 86  QAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVT 145
           QAKVEKEMGAVQDPA  + +QA +EE DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVT
Sbjct: 61  QAKVEKEMGAVQDPASAAVNQANREEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVT 120

Query: 146 ILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYN 205
           ILTDKFGQPKGFAYVEFLE +A+QEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRR+N
Sbjct: 121 ILTDKFGQPKGFAYVEFLEVEAIQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRFN 180

Query: 206 PYVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 238
           PY+G  FRRPYAPPYFYSPYGYGK+PRFRR MRYMPYY
Sbjct: 181 PYIGYRFRRPYAPPYFYSPYGYGKVPRFRRPMRYMPYY 218

[Close]

BLAST of CmaCh16G006980 vs. NCBI nr
Match: gi|595829341|ref|XP_007205858.1| (hypothetical protein PRUPE_ppa011157mg [Prunus persica])

HSP 1 Score: 370.9 bits (951), Expect = 1.6e-99
Identity = 193/221 (87.33%), Postives = 201/221 (90.95%), Query Frame = 1


Query: 26  MEEEEHEVYGGEIPVEGEMDGD-------VDMSVADDDAVKELDEMKKRLKEMEEEAAAL 85
           MEEEEHEVYGGEIP EGEM+GD       VDMS ADDDAVKELDEMKKRLKEMEEEAAAL
Sbjct: 1   MEEEEHEVYGGEIPDEGEMEGDIEAHHADVDMSTADDDAVKELDEMKKRLKEMEEEAAAL 60

Query: 86  REMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVN 145
           REMQAKVEKEMGAVQDPA  + SQA KEE D+RSVFVGNVDYACTPEEVQQHFQSCGTVN
Sbjct: 61  REMQAKVEKEMGAVQDPAAVAASQANKEEVDARSVFVGNVDYACTPEEVQQHFQSCGTVN 120

Query: 146 RVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPR 205
           RVTILTDKFGQPKGFAYVEFLE +AVQEAL+LNESELHGRQLKVLPKRTNVPGMKQYRPR
Sbjct: 121 RVTILTDKFGQPKGFAYVEFLETEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRPR 180

Query: 206 RYNPYVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 238
           R+NPY+G  FRRPY PPYFYSPYGYGK+PRFRR  RYMPYY
Sbjct: 181 RFNPYMGYRFRRPYVPPYFYSPYGYGKVPRFRRPARYMPYY 221

The following BLAST results are available for this feature:

BLAST of CmaCh16G006980 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PABN2_ARATH	7.3e-92	81.36	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PABN2 PE=1 SV=1	[more]
PABN3_ARATH	5.2e-90	80.09	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PABN3 PE=1 SV=1	[more]
PABN1_ARATH	6.7e-69	65.64	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana GN=PABN1 PE=1 SV=1	[more]
PAB2_SCHPO	3.1e-34	57.24	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
PAB2A_XENLA	2.5e-31	43.16	Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a PE=2 SV=1	[more]

BLAST of CmaCh16G006980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWF2_CUCSA	1.9e-115	95.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026860 PE=4 SV=1	[more]
M5W001_PRUPE	1.1e-99	87.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011157mg PE=4 SV=1	[more]
A0A061DHW1_THECC	1.9e-99	86.43	RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1 OS=Theobroma cacao GN=...	[more]
K7KQW5_SOYBN	5.6e-99	87.91	Uncharacterized protein OS=Glycine max GN=GLYMA_05G176400 PE=4 SV=1	[more]
A0A0D2QD31_GOSRA	5.6e-99	85.52	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G040800 PE=4 SV=1	[more]

BLAST of CmaCh16G006980 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G65260.1	4.1e-93	81.36	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.1	3.0e-91	80.09	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G51120.2	4.2e-61	54.55	polyadenylate-binding protein 1	[more]
AT3G12640.1	5.7e-10	33.58	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G55460.1	9.1e-08	36.59	SC35-like splicing factor 30	[more]

BLAST of CmaCh16G006980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198051\|gb\|KGN53209.1\|	2.8e-115	95.15	hypothetical protein Csa_4G026860 [Cucumis sativus]	[more]
gi\|449458283\|ref\|XP_004146877.1\|	3.0e-109	96.70	PREDICTED: polyadenylate-binding protein 2 [Cucumis sativus]	[more]
gi\|659107695\|ref\|XP_008453809.1\|	8.6e-109	96.23	PREDICTED: polyadenylate-binding protein 2 isoform X1 [Cucumis melo]	[more]
gi\|802673497\|ref\|XP_012081610.1\|	9.5e-100	88.53	PREDICTED: polyadenylate-binding protein 2 [Jatropha curcas]	[more]
gi\|595829341\|ref\|XP_007205858.1\|	1.6e-99	87.33	hypothetical protein PRUPE_ppa011157mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016607	nuclear speck
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0008143	poly(A) binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G006980.1	CmaCh16G006980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 113..181 score: 3.3
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 112..183 score: 1.1
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 111..187 score: 16
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 95..182 score: 3.0
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 101..211 score: 2.28
None	No IPR available	unknown	Coil	Coil	coord: 54..88 scor
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 108..182 score: 1.1E-27coord: 10..32 score: 1.1
None	No IPR available	PANTHER	PTHR24012:SF436	PABPN1 PROTEIN	coord: 10..32 score: 1.1E-27coord: 108..182 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G006980	Cucsa.093720	Cucumber (Gy14) v1	cgycmaB0195
CmaCh16G006980	Cla014132	Watermelon (97103) v1	cmawmB323
CmaCh16G006980	Cla010672	Watermelon (97103) v1	cmawmB312
CmaCh16G006980	Csa4G026860	Cucumber (Chinese Long) v2	cmacuB337
CmaCh16G006980	MELO3C017602	Melon (DHL92) v3.5.1	cmameB301
CmaCh16G006980	ClCG07G017390	Watermelon (Charleston Gray)	cmawcgB304
CmaCh16G006980	CSPI04G04520	Wild cucumber (PI 183967)	cmacpiB342
CmaCh16G006980	CmoCh16G007570	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G006980	Cp4.1LG14g01130	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G006980	MELO3C017602.2	Melon (DHL92) v3.6.1	cmamedB350
CmaCh16G006980	CsaV3_UNG128990	Cucumber (Chinese Long) v3	cmacucB0400
CmaCh16G006980	CsaV3_4G004620	Cucumber (Chinese Long) v3	cmacucB0393
CmaCh16G006980	Cla97C10G192490	Watermelon (97103) v2	cmawmbB336
CmaCh16G006980	Cla97C07G144430	Watermelon (97103) v2	cmawmbB354
CmaCh16G006980	Bhi01G001954	Wax gourd	cmawgoB0432
CmaCh16G006980	CsGy4G004430	Cucumber (Gy14) v2	cgybcmaB498
CmaCh16G006980	Carg05810	Silver-seed gourd	carcmaB1409

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G006980	Cucurbita moschata (Rifu)	cmacmoB337
CmaCh16G006980	Cucurbita pepo (Zucchini)	cmacpeB350
CmaCh16G006980	Bottle gourd (USVL1VR-Ls)	cmalsiB326
CmaCh16G006980	Silver-seed gourd	carcmaB1286
CmaCh16G006980	Cucumber (Chinese Long) v3	cmacucB0399
CmaCh16G006980	Cucumber (Chinese Long) v3	cmacucB0401
CmaCh16G006980	Watermelon (97103) v2	cmawmbB331
CmaCh16G006980	Cucurbita maxima (Rimu)	cmacmaB350