CsaV3_4G004620.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G004620.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Polyadenylate-binding protein 2
Location	chr4 : 2888082 .. 2891912 (+)
Sequence length	705

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTTCTACGCATCGAACGAGGAGATTTCTAGAAACCAAAGCGGAATTGTGAGCGAACGAGATATGGAGGAAGAGGAGCACGAGGTATACGGTGGAGAAATCCCAGTTGAAGGGGAGATGGAAGGAGACGTTGACATGTCTGCCGGCGACGACGACGCTGTCAAGGTTGCCATTTGTTCTTTCTCTTTCTGGTTCTCGTGCTTTGGAGAGAATCAGAAGAATTACAATTGTGATCGTTTATGTATTTCAGGAGCTTGACGAGATGAAAAAGCGCTTGAAGGAGATGGAGGAAGAAGCAGCGGCTCTTCGAGAAATGCAGGCCAAGGTTGAAAAAGAAATGGGAGCTGTGCAAGGTTGTTTTCTCATGATTACGCATTATTGTTTTCGTTTAGAAACATCTAGTCATGGAATCTCTTGAATTTGGATTGTGATGTTGTAAGCGATGATTTGGGGCTTGAAATTTTTGATGTGTTGTTGTGATATATTTGCTAGTATTACCACATATCTGTTTCGTTTCTTGCAAATTGCTAGCATATTACCACATAGCTGTGCAAGGTTGACAAAACTCTTGACATTATGGTTCGTAATTGTTACTTTTAAATTTTAGAATATGTTTAAGCTTGTGTTTAGTTTTATGTAACCTAGGGGAGTAATAATCGTATGTGATTATGGTTTTAGACAGAAACCAATATTGAATTATGCGATCATGTTGGTTGAAAGTTTCTTAAACTGGATGAATTTTAAAGTATGGTATTATAGTTAGTTTGTTTCTATAATTATTCTCCAATTTGGCCTATCTTATTTTACCTATTGTTGTTATGTTTGATGCAGATCCTGCTGGTACATCAGCTAGTCAAGCAGGCAAGGAGGAGACTGATTCACGATCAGTATTTGTTGGCAATGTGAGAAGAAAAATGTCCCTACTGATGTTCTTTAGATTTGAGAAAAACTTTTTAGTTATTTGATCTGTGGAAAAATGTTATTGAAATGAGGAATTTCTGCAAAAATTCAAAAAGAAAAAAAAAAGAAGGAAGAAGAATAGAAAGAAAGAAGAAAACTGTGAACGATGGTTGAAATACTGGTATAATGGGAAAAAATCAGTGAGAAAAAGAAAGAAAAAAAGAAAAAGAATCTGAAACATCAAAAACCATTAGTGAGTTGTTGCATTTAGAACAAAGGGACTGTTGCTAGTAGAACTTATGTTGCTGTAAAACATGCGCTTTGGAGGCTGGGACCGTTAAATGTGGAATAATGATGTCGATGGCTCAACTCTAGGTGACAACTCAAATGTCTCCGAGGAAGCAGAGGCGAGTCAAGTGCATGCAATTTTAGTTGCAGAGCCTTGTCAATGCTCGCAGTATTATCGTTTGTCTCACAAATGAGCTAAAAGGTGGAGGCGAGGGTGTAAGATAAACGCTTTTTTGTGGAATTATTTTTCTAGTTTGTGCTTCATTTGACTCGGTTAGACCAAATGTTGGATTTTAATGCATGCATTTCACCTTAACCAGGTGATCTTTGAAAGACTATTAGTCCTTTTCTTCATATTAGAAAATTTTACTAGATTTATTTATTAATCTAGACTTTTCCTTTTAGTTAGAAACTCAACCTGTCATCTTCCGGCAGAGAGTCTTCTAGTTTCATAGTGGTAATTTTATTTCAAAACTATGTGAACTAAGATTAATGTGAGAAATCCTCCATGTTGAAGAATAAATACCTCATTCTCAATCATATCTAATGTGGAACTGTTTTCTACTACTTATAATTGATCTATTAGCAGAGGGAGGCATGCTTGGACATGCATCTGCCATGTGAATCTCATGCCTCTGATTGACTGCTACTTCTACATATGTTCATTGAACATATGAGTTGGATTTTCGTGGTGATTTGGTGATTTTGTTCATAGTTAATAATTTCTGATTCACTTCCCATGCCATTGGAAGTTTATTACTTCTTAATGTTGCTCTGGTGTATTTATCCCCAAGCCTTGTTGATTACATGTGATGAAGTTTGCTTTTCTTTTTTTGTTTTTGTTTTTGTACAAAGCTTCTTAGCGTAAAACTTTATTAAGAAACCAAACAATTAAGTCACTGAAAAAGTAAGTAGTATTTATATTTATATTAAAAGCTAAACAACAATCATAAGACTTTTTTTTTAAAACATACTAACTTAATTATTGCTGTCTGATGTGTTCTTCGAACAGAGAACACTAGCTTTGTATTCACTTTTATAGAACTTAACTATTTTATGCTCAAAGCTCTACTTCAACAATCAACGTCCTTGTTTTGAAGGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACTGATAAATTTGGTCAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGAAGCTGTTCAAGAGGCTCTCGTTCTGAATGAATCTGAGCTACATGGGCGGCAACTGAAGGTGAGTCTTCCATTCTCTAGGTTTTCCATAAAAAATAAAAAGGTTTTTCGTTCACAAAAAAAAAAAAAAAGGAAATTTCTGGAAGGAGAAACCTTTCTGGTTCACTGGTTTGGTTTGGTGTGAATAGATAGATATAGGTTAAATTTCAAATTTGGTCGTAGGGTTTGAGTGATGTTAGTTATGTTAGAATTGAGTCGTAATGGTTCGTAATTAATATTTACTCCCTACGGTTTCATAAAACCTTCACAGATAGGTTCAACGATAAAGACATTTATGAGAATTTTATCAAATAATAGGGACTGTCTGTGAGGTTTTGTCAAAACTATAGAGACTAAATTCTATCTTTACTCTAACACTTCAATTTCACAAACCCTAGGAACAAATTTGTAATTTACTTCAACCAGATAGATATCATGCAACGCTTGGGAACTTCAATATCACTCTGACCAATATTGACATTATTTGCTTGATTACACCATTCCAGGTTTTGCCCAAGAGAACAAATGTTCCTGGTATGAAGCAATATCGTGCACGTCGCTATAACCCGTACGTGGGATTTAGGAGACCTTATGCACCACCATATTTCTATTCACCTTATGGATACGGGTACAGTTTCTAGTTTCCTAATCTTGCATTGTCATGGAAATTGTTGATTCTGCCAGTTTCTTGATCCTTCAATATCCCAATGCAGGAAGATGCCCCGGTTTCGTAGGTCCATGAGGTACATGCCTTATTATTAGATGATGCCACATCATTGTTCAGGTTTAATAAGTTTGTCCTGAAAGAGTTGGCAGTTGCTTTTGATCCTCGAGAGAATAGAGAAAGGATATATGTCTATATTCATGTTATATTGTTATCTGTCTATTGCTTTTGTTATCTTGGATATAAATTACTTTGCCGTTTCAATAAGTATATATATATATATTTTTGCCTAATTACTCGTTCATAATACACTGATGCTGTCCAGTTTTAAGGGGGCGTTTTAATTAACCTTTTAGTGTTTATATGTGAAAAAAAATGTTTGTAAATGCTAAAAAAAAAAAGTTTATAAACACCAAAAAGTCGATTCAAATGGGTGCTTGCGTTTGATAATGATTCTTCTCAATAATTGCTGGAAAAAAAGTTAGGTTATCGTTGCTTCTACTAAATTGCATAAACTCAACGATATTAAAAAAAATTATGGTTCAATTATAGAGTACACTGCTACATTTTCATCGAGAAAATTCATGGAAAAAAGATAATTTGATCTAAATTGGGTGATGATGCTCTGTTTTAGGACTTCGCTAATTGATCATATACTTACCTTTTTATCTATTTTGGAATCTCTTGTCCGCAAAATGAAATCTCT

mRNA sequence

ATGCAGTTCTACGCATCGAACGAGGAGATTTCTAGAAACCAAAGCGGAATTGTGAGCGAACGAGATATGGAGGAAGAGGAGCACGAGGTATACGGTGGAGAAATCCCAGTTGAAGGGGAGATGGAAGGAGACGTTGACATGTCTGCCGGCGACGACGACGCTGTCAAGGAGCTTGACGAGATGAAAAAGCGCTTGAAGGAGATGGAGGAAGAAGCAGCGGCTCTTCGAGAAATGCAGGCCAAGGTTGAAAAAGAAATGGGAGCTGTGCAAGATCCTGCTGGTACATCAGCTAGTCAAGCAGGCAAGGAGGAGACTGATTCACGATCAGTATTTGTTGGCAATGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACTGATAAATTTGGTCAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGAAGCTGTTCAAGAGGCTCTCGTTCTGAATGAATCTGAGCTACATGGGCGGCAACTGAAGGTTTTGCCCAAGAGAACAAATGTTCCTGGTATGAAGCAATATCGTGCACGTCGCTATAACCCGTACGTGGGATTTAGGAGACCTTATGCACCACCATATTTCTATTCACCTTATGGATACGGGAAGATGCCCCGGTTTCGTAGGTCCATGAGGTACATGCCTTATTATTAG

Coding sequence (CDS)

ATGCAGTTCTACGCATCGAACGAGGAGATTTCTAGAAACCAAAGCGGAATTGTGAGCGAACGAGATATGGAGGAAGAGGAGCACGAGGTATACGGTGGAGAAATCCCAGTTGAAGGGGAGATGGAAGGAGACGTTGACATGTCTGCCGGCGACGACGACGCTGTCAAGGAGCTTGACGAGATGAAAAAGCGCTTGAAGGAGATGGAGGAAGAAGCAGCGGCTCTTCGAGAAATGCAGGCCAAGGTTGAAAAAGAAATGGGAGCTGTGCAAGATCCTGCTGGTACATCAGCTAGTCAAGCAGGCAAGGAGGAGACTGATTCACGATCAGTATTTGTTGGCAATGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACTGATAAATTTGGTCAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGAAGCTGTTCAAGAGGCTCTCGTTCTGAATGAATCTGAGCTACATGGGCGGCAACTGAAGGTTTTGCCCAAGAGAACAAATGTTCCTGGTATGAAGCAATATCGTGCACGTCGCTATAACCCGTACGTGGGATTTAGGAGACCTTATGCACCACCATATTTCTATTCACCTTATGGATACGGGAAGATGCCCCGGTTTCGTAGGTCCATGAGGTACATGCCTTATTATTAG

Protein sequence

MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY

Homology

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BLAST of CsaV3_4G004620.1 vs. NCBI nr
Match: KGN53209.1 (hypothetical protein Csa_4G026860 [Cucumis sativus])

HSP 1 Score: 346.7 bits (888), Expect = 6.3e-92
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXX 60
           MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXX
Sbjct: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACT 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACT
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACT 120

Query: 121 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL 180
           PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL
Sbjct: 121 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL 180

Query: 181 PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 235
           PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 181 PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

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BLAST of CsaV3_4G004620.1 vs. NCBI nr
Match: XP_008453809.2 (PREDICTED: polyadenylate-binding protein 2 isoform X1 [Cucumis melo])

HSP 1 Score: 338.6 bits (867), Expect = 1.7e-89
Identity = 229/234 (97.86%), Postives = 230/234 (98.29%), Query Frame = 0


Query: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXX 60
           MQFYASNEEISRN+S I SERDMEEEEHEVYGGEIPVEGEMEGDVDMS XXXXXXXXXXX
Sbjct: 1   MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACT 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EETDSRSVFVGNVDYACT
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEETDSRSVFVGNVDYACT 120

Query: 121 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL 180
           PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL
Sbjct: 121 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL 180

Query: 181 PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 235
           PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 181 PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

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BLAST of CsaV3_4G004620.1 vs. NCBI nr
Match: XP_004146877.1 (PREDICTED: polyadenylate-binding protein 2 [Cucumis sativus])

HSP 1 Score: 306.6 bits (784), Expect = 7.3e-80
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 23  MEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 82
           MEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 83  XXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 142
           XXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120

Query: 143 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 202
           KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG
Sbjct: 121 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 180

Query: 203 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 235
           FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 181 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 212

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BLAST of CsaV3_4G004620.1 vs. NCBI nr
Match: XP_022929268.1 (polyadenylate-binding protein 2-like [Cucurbita moschata] >XP_022929269.1 polyadenylate-binding protein 2-like [Cucurbita moschata] >XP_022985028.1 polyadenylate-binding protein 2-like [Cucurbita maxima] >XP_023553273.1 polyadenylate-binding protein 2-like [Cucurbita pepo subsp. pepo] >XP_023553274.1 polyadenylate-binding protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 299.7 bits (766), Expect = 8.9e-78
Identity = 197/212 (92.92%), Postives = 200/212 (94.34%), Query Frame = 0


Query: 23  MEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 82
           MEEEEHEVYGGEIPVEGEM+GDVDMS          XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 83  XXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 142
           XXXXXXXXXXXXXXXXXXX EETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 61  XXXXXXXXXXXXXXXXXXXKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120

Query: 143 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 202
           KFGQPKGFAYVEFLEA+AVQEAL+LNESELHGRQLKVLPKRTNVPGMKQYR RRYNPYVG
Sbjct: 121 KFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVG 180

Query: 203 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 235
           FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 181 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 212

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BLAST of CsaV3_4G004620.1 vs. NCBI nr
Match: XP_022136947.1 (polyadenylate-binding protein 2-like isoform X1 [Momordica charantia])

HSP 1 Score: 297.7 bits (761), Expect = 3.4e-77
Identity = 206/212 (97.17%), Postives = 209/212 (98.58%), Query Frame = 0


Query: 23  MEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 82
           MEEEEHEVYGGEIPVEGEM+GDVDMSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 83  XXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 142
           XXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120

Query: 143 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 202
           KFGQPKGFAYVEFLEAEAVQEAL+LNESELHGRQLKVLPKRTNVPGMKQYR RRYNPY+G
Sbjct: 121 KFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMG 180

Query: 203 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 235
           FRRPY PPYFYSPYGYGKMPRFRR MRYMPYY
Sbjct: 181 FRRPYVPPYFYSPYGYGKMPRFRRPMRYMPYY 212

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BLAST of CsaV3_4G004620.1 vs. TAIR10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 243.0 bits (619), Expect = 1.8e-64
Identity = 159/219 (72.60%), Postives = 171/219 (78.08%), Query Frame = 0


Query: 23  MEEEEHEVYGGEIPVEGEMEGDVD------MSAXXXXXXXXXXXXXXXXXXXXXXXXXXX 82
           MEEEEHEVYGGEIP  GEM+GD++         XXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEEEEHEVYGGEIPDVGEMDGDMEALNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 83  XXXXXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNR 142
           X                         EE D+RSVFVGNVDYACTPEEVQQHFQ+CGTV+R
Sbjct: 61  XEMQAKVEKEMGAQDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHR 120

Query: 143 VTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARR 202
           VTILTDKFGQPKGFAYVEF+E EAVQEAL LNESELHGRQLKVL KRTNVPG+KQ+R RR
Sbjct: 121 VTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGRR 180

Query: 203 YNPYVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPY 234
           +NPY+G  FRRP+  PY YSPYGYGK PRFRR MRYMPY
Sbjct: 181 FNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMRYMPY 219

[Close]

BLAST of CsaV3_4G004620.1 vs. TAIR10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 243.0 bits (619), Expect = 1.8e-64
Identity = 131/216 (60.65%), Postives = 141/216 (65.28%), Query Frame = 0


Query: 23  MEEEEHEVYGGEIPVEGEM---EGDVDMSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 82
           MEEEEHEVYGGEIP  G+    + D+DMSA                              
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 83  XXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 142
                                  EE D+RSV+VGNVDYACTPEEVQ HFQ+CGTVNRVTI
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120

Query: 143 LTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNP 202
           L DKFGQPKGFAYVEF+E EAVQEAL LNESELHGRQLKV PKRTNVPGMKQY   R+NP
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNP 180

Query: 203 YVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPY 234
            +G  FRRP+ PPYFYSPYGYGK PRFRR MRYMPY
Sbjct: 181 SMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216

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BLAST of CsaV3_4G004620.1 vs. TAIR10
Match: AT5G51120.2 (polyadenylate-binding protein 1)

HSP 1 Score: 201.1 bits (510), Expect = 7.8e-52
Identity = 100/133 (75.19%), Postives = 111/133 (83.46%), Query Frame = 0


Query: 103 EETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQ 162
           EE DSRS++VGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEF+E EAVQ
Sbjct: 136 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQ 195

Query: 163 EALVLNESELHGRQLKVLPKRTNVPGMKQY--RARRYNPYVGFRRPYAPPYFYSPYGYGK 222
            +L+LNESELHGRQ+KV  KRTNVPGM+Q+  R R + P  GF  P  P  FY PY YG+
Sbjct: 196 NSLILNESELHGRQIKVSAKRTNVPGMRQFRGRGRPFRPMRGF-MPGVP--FYPPYAYGR 255

Query: 223 MPRFRRSMRYMPY 234
           +PRFRR MRY PY
Sbjct: 256 VPRFRRPMRYRPY 265

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BLAST of CsaV3_4G004620.1 vs. TAIR10
Match: AT3G12640.1 (RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-10
Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = 0


Query: 103 EETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFLEAEAV 162
           E+  SR++FV NV +  T + + +HF   G V +  I+TD   GQP G AY+EF   EA 
Sbjct: 475 EDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAA 534

Query: 163 QEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVGFRRPYAPPYF 213
           + AL L+ +    R LK++ K +N  G  Q  A   +   G R   AP YF
Sbjct: 535 ENALSLDGTSFMSRILKIV-KGSN--GQNQEAASSMSWSRGGRFTRAPSYF 582

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BLAST of CsaV3_4G004620.1 vs. TAIR10
Match: AT3G55460.1 (SC35-like splicing factor 30)

HSP 1 Score: 52.0 bits (123), Expect = 5.8e-07
Identity = 28/74 (37.84%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 109 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEA-EAVQEALV 168
           S+ V N+   C PEE+++ F+  G V  V I  D + GQP+GFA+VEF++A +A +    
Sbjct: 48  SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRS 107

Query: 169 LNESELHGRQLKVL 181
           +N     GR++ V+
Sbjct: 108 MNRRSFAGREITVV 121

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BLAST of CsaV3_4G004620.1 vs. Swiss-Prot
Match: sp|Q9FJN9|PABN2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.2e-63
Identity = 159/219 (72.60%), Postives = 171/219 (78.08%), Query Frame = 0


Query: 23  MEEEEHEVYGGEIPVEGEMEGDVD------MSAXXXXXXXXXXXXXXXXXXXXXXXXXXX 82
           MEEEEHEVYGGEIP  GEM+GD++         XXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEEEEHEVYGGEIPDVGEMDGDMEALNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 83  XXXXXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNR 142
           X                         EE D+RSVFVGNVDYACTPEEVQQHFQ+CGTV+R
Sbjct: 61  XEMQAKVEKEMGAQDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHR 120

Query: 143 VTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARR 202
           VTILTDKFGQPKGFAYVEF+E EAVQEAL LNESELHGRQLKVL KRTNVPG+KQ+R RR
Sbjct: 121 VTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGRR 180

Query: 203 YNPYVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPY 234
           +NPY+G  FRRP+  PY YSPYGYGK PRFRR MRYMPY
Sbjct: 181 FNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMRYMPY 219

[Close]

BLAST of CsaV3_4G004620.1 vs. Swiss-Prot
Match: sp|Q9LX90|PABN3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.2e-63
Identity = 131/216 (60.65%), Postives = 141/216 (65.28%), Query Frame = 0


Query: 23  MEEEEHEVYGGEIPVEGEM---EGDVDMSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 82
           MEEEEHEVYGGEIP  G+    + D+DMSA                              
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 83  XXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 142
                                  EE D+RSV+VGNVDYACTPEEVQ HFQ+CGTVNRVTI
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120

Query: 143 LTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNP 202
           L DKFGQPKGFAYVEF+E EAVQEAL LNESELHGRQLKV PKRTNVPGMKQY   R+NP
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNP 180

Query: 203 YVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPY 234
            +G  FRRP+ PPYFYSPYGYGK PRFRR MRYMPY
Sbjct: 181 SMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216

[Close]

BLAST of CsaV3_4G004620.1 vs. Swiss-Prot
Match: sp|Q93VI4|PABN1_ARATH (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.4e-50
Identity = 100/133 (75.19%), Postives = 111/133 (83.46%), Query Frame = 0


Query: 103 EETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQ 162
           EE DSRS++VGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEF+E EAVQ
Sbjct: 98  EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQ 157

Query: 163 EALVLNESELHGRQLKVLPKRTNVPGMKQY--RARRYNPYVGFRRPYAPPYFYSPYGYGK 222
            +L+LNESELHGRQ+KV  KRTNVPGM+Q+  R R + P  GF  P  P  FY PY YG+
Sbjct: 158 NSLILNESELHGRQIKVSAKRTNVPGMRQFRGRGRPFRPMRGF-MPGVP--FYPPYAYGR 217

Query: 223 MPRFRRSMRYMPY 234
           +PRFRR MRY PY
Sbjct: 218 VPRFRRPMRYRPY 227

[Close]

BLAST of CsaV3_4G004620.1 vs. Swiss-Prot
Match: sp|O14327|PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.9e-27
Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 106 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEAEAVQEA 165
           D++SV+VGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E   V  A
Sbjct: 53  DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112

Query: 166 LVLNESELHGRQLKVLPKRTNVPGMKQ 192
           L+LN S LH R LKV PKRTNVPGM +
Sbjct: 113 LLLNGSMLHERPLKVTPKRTNVPGMSR 139

[Close]

BLAST of CsaV3_4G004620.1 vs. Swiss-Prot
Match: sp|Q28165|PABP2_BOVIN (Polyadenylate-binding protein 2 OS=Bos taurus OX=9913 GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 119.8 bits (299), Expect = 4.1e-26
Identity = 68/140 (48.57%), Postives = 87/140 (62.14%), Query Frame = 0


Query: 104 ETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEAEAVQ 163
           E D+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + E+V+
Sbjct: 168 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVR 227

Query: 164 EALVLNESELHGRQLKVLPKRTNVPGMK---------QYRARRYNPYVGFRRPYAPPYFY 223
            +L L+ES   GRQ+KV+PKRTN PG+          +YRAR  N Y   R  +   +  
Sbjct: 228 TSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTN-YNSSRSRFYSGFNS 287

Query: 224 SPYGYGKMPRFRRSMRYMPY 234
            P G     R R +  Y PY
Sbjct: 288 RPRGRVYRGRARATSWYSPY 306

[Close]

BLAST of CsaV3_4G004620.1 vs. TrEMBL
Match: tr|A0A0A0KWF2|A0A0A0KWF2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026860 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 4.2e-92
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXX 60
           MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXX
Sbjct: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACT 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACT
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACT 120

Query: 121 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL 180
           PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL
Sbjct: 121 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL 180

Query: 181 PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 235
           PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 181 PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

[Close]

BLAST of CsaV3_4G004620.1 vs. TrEMBL
Match: tr|A0A1S3BX92|A0A1S3BX92_CUCME (polyadenylate-binding protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494425 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.1e-89
Identity = 229/234 (97.86%), Postives = 230/234 (98.29%), Query Frame = 0


Query: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXX 60
           MQFYASNEEISRN+S I SERDMEEEEHEVYGGEIPVEGEMEGDVDMS XXXXXXXXXXX
Sbjct: 1   MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACT 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EETDSRSVFVGNVDYACT
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEETDSRSVFVGNVDYACT 120

Query: 121 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL 180
           PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL
Sbjct: 121 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL 180

Query: 181 PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 235
           PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 181 PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

[Close]

BLAST of CsaV3_4G004620.1 vs. TrEMBL
Match: tr|A0A2R6S330|A0A2R6S330_ACTCH (Polyadenylate-binding protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc01202 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.1e-71
Identity = 170/214 (79.44%), Postives = 178/214 (83.18%), Query Frame = 0


Query: 23  MEEEEHEVYGGEIPVEGEMEGDVDMSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 82
           MEEEEHEVYGGEIPVE EM+ DVDMS          XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEEEEHEVYGGEIPVEAEMDADVDMSVADDDAVKELXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 83  XXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 142
           XXX                 EE DSRS+FVGNVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 61  XXXMGAVQDPANAAATQASREEVDSRSIFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120

Query: 143 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYV- 202
           KFGQPKGFAYVEF+E EAVQEAL+LNESELHGRQLKV+ KRTNVPGMKQ+R RRYNPY+ 
Sbjct: 121 KFGQPKGFAYVEFVEVEAVQEALLLNESELHGRQLKVMAKRTNVPGMKQFRGRRYNPYMG 180

Query: 203 -GFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 235
            GFRRPY PPYFYSPYGYGK+PRFRRSMRYMPYY
Sbjct: 181 YGFRRPYVPPYFYSPYGYGKVPRFRRSMRYMPYY 214

[Close]

BLAST of CsaV3_4G004620.1 vs. TrEMBL
Match: tr|K7KQW5|K7KQW5_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100789721 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.2e-70
Identity = 164/215 (76.28%), Postives = 171/215 (79.53%), Query Frame = 0


Query: 23  MEEEEHEVYGGEIPVEGEMEGDVDMS-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 82
           MEEEEHEVYGGEIP EGEMEGD+DMS A             XXXXXXXXXXXXXXXXXX 
Sbjct: 1   MEEEEHEVYGGEIPDEGEMEGDIDMSAADDDAAVKELDEMKXXXXXXXXXXXXXXXXXXK 60

Query: 83  XXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILT 142
                                EE DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILT
Sbjct: 61  VDKEIGSVQDPANSAASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILT 120

Query: 143 DKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYV 202
           DKFGQPKGFAYVEF+EAEAVQEAL+LNESELHGRQLKVLPKRTNVPGMKQYR RR+NPY+
Sbjct: 121 DKFGQPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYM 180

Query: 203 --GFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 235
             GFRRPY PPYFYSPYGYGK+PRFRR  RYMPY+
Sbjct: 181 AYGFRRPYTPPYFYSPYGYGKVPRFRRPNRYMPYH 215

[Close]

BLAST of CsaV3_4G004620.1 vs. TrEMBL
Match: tr|A0A1S3UR73|A0A1S3UR73_VIGRR (polyadenylate-binding protein 2 isoform X1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106768125 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.2e-70
Identity = 167/215 (77.67%), Postives = 172/215 (80.00%), Query Frame = 0


Query: 23  MEEEEHEVYGGEIPVEGEMEGDVDMS-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 82
           MEEEEHEVYGGEIP EGEMEGDVDMS A            XXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEEEEHEVYGGEIPDEGEMEGDVDMSAADDDAAVKELDEMXXXXXXXXXXXXXXXXXXXX 60

Query: 83  XXXXXXXXXXXXXXXXXXXXXEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILT 142
                                EE DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILT
Sbjct: 61  VEKEIGSVQDPANAAASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILT 120

Query: 143 DKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYV 202
           DKFGQPKGFAYVEF+E EAVQEALVLNESELHGRQLKVLPKRTNVPGMKQ+R RR+NPY+
Sbjct: 121 DKFGQPKGFAYVEFVEVEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQHRPRRFNPYM 180

Query: 203 --GFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 235
             GFRRPY PPYFYSPYGYGK+PRFRR  RYMPYY
Sbjct: 181 AYGFRRPYTPPYFYSPYGYGKVPRFRRPNRYMPYY 215

The following BLAST results are available for this feature:

BLAST of CsaV3_4G004620.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53209.1	6.3e-92	100.00	hypothetical protein Csa_4G026860 [Cucumis sativus]	[more]
XP_008453809.2	1.7e-89	97.86	PREDICTED: polyadenylate-binding protein 2 isoform X1 [Cucumis melo]	[more]
XP_004146877.1	7.3e-80	100.00	PREDICTED: polyadenylate-binding protein 2 [Cucumis sativus]	[more]
XP_022929268.1	8.9e-78	92.92	polyadenylate-binding protein 2-like [Cucurbita moschata] >XP_022929269.1 polyad...	[more]
XP_022136947.1	3.4e-77	97.17	polyadenylate-binding protein 2-like isoform X1 [Momordica charantia]	[more]

BLAST of CsaV3_4G004620.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G65260.1	1.8e-64	72.60	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.1	1.8e-64	60.65	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G51120.2	7.8e-52	75.19	polyadenylate-binding protein 1	[more]
AT3G12640.1	1.1e-10	37.84	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G55460.1	5.8e-07	37.84	SC35-like splicing factor 30	[more]

BLAST of CsaV3_4G004620.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FJN9\|PABN2_ARATH	3.2e-63	72.60	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV...	[more]
sp\|Q9LX90\|PABN3_ARATH	3.2e-63	60.65	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV...	[more]
sp\|Q93VI4\|PABN1_ARATH	1.4e-50	75.19	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV...	[more]
sp\|O14327\|PAB2_SCHPO	4.9e-27	68.97	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
sp\|Q28165\|PABP2_BOVIN	4.1e-26	48.57	Polyadenylate-binding protein 2 OS=Bos taurus OX=9913 GN=PABPN1 PE=1 SV=3	[more]

BLAST of CsaV3_4G004620.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KWF2\|A0A0A0KWF2_CUCSA	4.2e-92	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026860 PE=4 SV=1	[more]
tr\|A0A1S3BX92\|A0A1S3BX92_CUCME	1.1e-89	97.86	polyadenylate-binding protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034944...	[more]
tr\|A0A2R6S330\|A0A2R6S330_ACTCH	4.1e-71	79.44	Polyadenylate-binding protein OS=Actinidia chinensis var. chinensis OX=1590841 G...	[more]
tr\|K7KQW5\|K7KQW5_SOYBN	1.2e-70	76.28	Uncharacterized protein OS=Glycine max OX=3847 GN=100789721 PE=4 SV=1	[more]
tr\|A0A1S3UR73\|A0A1S3UR73_VIGRR	1.2e-70	77.67	polyadenylate-binding protein 2 isoform X1 OS=Vigna radiata var. radiata OX=3916...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_4G004620	CsaV3_4G004620	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G004620.1	CsaV3_4G004620.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G004620.1.exon1	CsaV3_4G004620.1.exon1	exon
CsaV3_4G004620.1.exon2	CsaV3_4G004620.1.exon2	exon
CsaV3_4G004620.1.exon3	CsaV3_4G004620.1.exon3	exon
CsaV3_4G004620.1.exon4	CsaV3_4G004620.1.exon4	exon
CsaV3_4G004620.1.exon5	CsaV3_4G004620.1.exon5	exon
CsaV3_4G004620.1.exon6	CsaV3_4G004620.1.exon6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G004620.1.cds1	CsaV3_4G004620.1.cds1	CDS
CsaV3_4G004620.1.cds2	CsaV3_4G004620.1.cds2	CDS
CsaV3_4G004620.1.cds3	CsaV3_4G004620.1.cds3	CDS
CsaV3_4G004620.1.cds4	CsaV3_4G004620.1.cds4	CDS
CsaV3_4G004620.1.cds5	CsaV3_4G004620.1.cds5	CDS
CsaV3_4G004620.1.cds6	CsaV3_4G004620.1.cds6	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 51..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..107
None	No IPR available	PANTHER	PTHR43987	FAMILY NOT NAMED	coord: 43..234
None	No IPR available	PANTHER	PTHR43987:SF1	SUBFAMILY NOT NAMED	coord: 43..234
None	No IPR available	CDD	cd12306	RRM_II_PABPs	coord: 109..180 e-value: 3.77596E-47 score: 151.675
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 109..180 e-value: 3.7E-20 score: 83.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 110..178 e-value: 9.8E-17 score: 60.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 108..184 score: 16.773
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 19..192 e-value: 1.4E-26 score: 95.4
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 98..208