CsaV3_4G004370 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G004370
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionChlorophyll A-B binding protein
Locationchr4 : 2745815 .. 2747208 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAATTGCTATCTCTGCCTCATTGCCAAGAGCATCCAATTCAAATCATGTCTCCATGAAGAAAAAACAACGTGTTCATCTAGCTAAACCCGGCTATTCCTCAACGACGAAAAACCCAACACCAAAGGTAATTAGTACTCTTGATGTCGTGAACCGAGACGATGGTGCTGCACAGCAGTATCGTCGTGGAAATGCTGCATCAGCTGTGGTTAAGGAAGAGGAAGATAATAATGATGATTGGAATAACAATGGTGAAAGATTTACTGATAAGAGATGGAAAAATGGAACTTGGGATCTCAATATGTTTGTACAGAATGGTAAGATGGATTGGGAAGGTGTCATTGTTGAAGGTGAGTGCATCTCATTTTTATAATTTTGAGTTAGAAGAAAACTCGATTTCGATTTCTAAACTTTTGGATAGTAAATACCTCTCGTTAATTAGTTATTGAAGGTAAATTGTTAAAATTACTTTTATTATGTCCTAATCATTTCAAAACTCACCTTTAATCACTCAAAATTGATTTATTATTCAATTTTATACTTCATGCAACTTTAATATTACAATTTAGTAATTTATGAACAATATTATTAAATTTTCTTTTTAACGTGTTTAATAAATCACAAAGATTGTTACCGTTATTACAAAATTAAAAGTACATTAACAGAATTCTTACAAATTAAACTAAGACAATTCATAAAAATTATGAAACCAAAAGTATTAATTTTTAACCATAATCTTACAAACCATATATTGAACGATTAAATTTATTATAGCCTATCAACCTTTTAATTAATAGCATAGTCTACTTTTATATATGTCATCAAGTATTATTCATAATGTGAATTAGAAGTTTGGATTAGCGTTATAAATTATTGTACACATTGTAGAAGCAAAGAGGAGGAAGTTTCTTGAAATACATCCAGAAGCAGCTACAAATCAAGAACCTGTGGTCTTCAGAAGCTCCATTATACCTTGGTGGGTATGGCTCACCAAGTCCTACCTTCCACAAGCCGAACTACTTAATGGTATGATTCAAAAACAAATAAACAAGCAGCTAATCAATAACTGTCTGTCTTATCCACTAAATTAAACTAACGTTTTGAATTGATATGTTGTTCTTGTTTGTTTGTTTGTTGATGGATGATGATGATGATGAAGGTAGGGCAGCGATGATAGGGTTCTTCATGGGGTATGCAGTGGATGCATTAACAGGAGTTGGAATAGTTGGGCAAAGCGGGAATTTCATATGCAAAACAGCTCTTTTTTTAACTGTCATTGGCGTGTTGCTGTTTAGGCAAAGTGAAGATATTGAGAACTTAAGGAATATAGCTGAAGAAGCCACCTTCTATGACAAGCAATGGCAATCTTCATGGCAAAAACCAAAATGA

mRNA sequence

ATGGCTTCAATTGCTATCTCTGCCTCATTGCCAAGAGCATCCAATTCAAATCATGTCTCCATGAAGAAAAAACAACGTGTTCATCTAGCTAAACCCGGCTATTCCTCAACGACGAAAAACCCAACACCAAAGGTAATTAGTACTCTTGATGTCGTGAACCGAGACGATGGTGCTGCACAGCAGTATCGTCGTGGAAATGCTGCATCAGCTGTGGTTAAGGAAGAGGAAGATAATAATGATGATTGGAATAACAATGGTGAAAGATTTACTGATAAGAGATGGAAAAATGGAACTTGGGATCTCAATATGTTTGTACAGAATGGTAAGATGGATTGGGAAGGTGTCATTGTTGAAGAAGCAAAGAGGAGGAAGTTTCTTGAAATACATCCAGAAGCAGCTACAAATCAAGAACCTGTGGTCTTCAGAAGCTCCATTATACCTTGGTGGGTATGGCTCACCAAGTCCTACCTTCCACAAGCCGAACTACTTAATGGTAGGGCAGCGATGATAGGGTTCTTCATGGGGTATGCAGTGGATGCATTAACAGGAGTTGGAATAGTTGGGCAAAGCGGGAATTTCATATGCAAAACAGCTCTTTTTTTAACTGTCATTGGCGTGTTGCTGTTTAGGCAAAGTGAAGATATTGAGAACTTAAGGAATATAGCTGAAGAAGCCACCTTCTATGACAAGCAATGGCAATCTTCATGGCAAAAACCAAAATGA

Coding sequence (CDS)

ATGGCTTCAATTGCTATCTCTGCCTCATTGCCAAGAGCATCCAATTCAAATCATGTCTCCATGAAGAAAAAACAACGTGTTCATCTAGCTAAACCCGGCTATTCCTCAACGACGAAAAACCCAACACCAAAGGTAATTAGTACTCTTGATGTCGTGAACCGAGACGATGGTGCTGCACAGCAGTATCGTCGTGGAAATGCTGCATCAGCTGTGGTTAAGGAAGAGGAAGATAATAATGATGATTGGAATAACAATGGTGAAAGATTTACTGATAAGAGATGGAAAAATGGAACTTGGGATCTCAATATGTTTGTACAGAATGGTAAGATGGATTGGGAAGGTGTCATTGTTGAAGAAGCAAAGAGGAGGAAGTTTCTTGAAATACATCCAGAAGCAGCTACAAATCAAGAACCTGTGGTCTTCAGAAGCTCCATTATACCTTGGTGGGTATGGCTCACCAAGTCCTACCTTCCACAAGCCGAACTACTTAATGGTAGGGCAGCGATGATAGGGTTCTTCATGGGGTATGCAGTGGATGCATTAACAGGAGTTGGAATAGTTGGGCAAAGCGGGAATTTCATATGCAAAACAGCTCTTTTTTTAACTGTCATTGGCGTGTTGCTGTTTAGGCAAAGTGAAGATATTGAGAACTTAAGGAATATAGCTGAAGAAGCCACCTTCTATGACAAGCAATGGCAATCTTCATGGCAAAAACCAAAATGA

Protein sequence

MASIAISASLPRASNSNHVSMKKKQRVHLAKPGYSSTTKNPTPKVISTLDVVNRDDGAAQQYRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEAKRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDALTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQKPK
Homology
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BLAST of CsaV3_4G004370 vs. NCBI nr
Match: XP_004146894.2 (PREDICTED: uncharacterized protein LOC101203022 [Cucumis sativus] >KGN53183.1 hypothetical protein Csa_4G025130 [Cucumis sativus])

HSP 1 Score: 409.5 bits (1051), Expect = 8.2e-111
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0 

Query: 1   MASIAISASLPRASNSNHVSMKKKQRVHLAKPGYSSTTKNPTPKVISTLDVVNRXXXXXX 60
           MASIAISASLPRASNSNHVSMKKKQRVHLAKPGYSSTTKNPTPKVISTLDVVNRXXXXXX
Sbjct: 1   MASIAISASLPRASNSNHVSMKKKQRVHLAKPGYSSTTKNPTPKVISTLDVVNRXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEA 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEA
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEA 120

Query: 121 KRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDA 180
           KRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDA
Sbjct: 121 KRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDA 180

Query: 181 LTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQKPK 240
           LTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQKPK
Sbjct: 181 LTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQKPK 240

[Close]
BLAST of CsaV3_4G004370 vs. NCBI nr
Match: XP_008453842.1 (PREDICTED: uncharacterized protein LOC103494445 [Cucumis melo])

HSP 1 Score: 374.8 bits (961), Expect = 2.2e-100
Identity = 224/241 (92.95%), Postives = 232/241 (96.27%), Query Frame = 0 

Query: 1   MASIAISASLPRASNSNHVSMKKKQR-VHLAKPGYSSTTKNPTPKVISTLDVVNR--XXX 60
           MASIAISASLPRA+N NHVSMKKKQ+  HLAKP YSS TKNPTPKVISTLDV NR  XXX
Sbjct: 1   MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXERFTDKRWKNGTWDLNMFVQNGKMDWEGVIV 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXERFTDKRWKNGTWDLNMFV+NGKMDWEGVIV
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV 120

Query: 121 EEAKRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYA 180
           EEAKRRKFLE+HPEAATN+EPV+FRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGY 
Sbjct: 121 EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG 180

Query: 181 VDALTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQ 239
           VDALTG+GIVGQSGNFICKTALFLTVIGVLLFRQSED+ENLRNIAEEATFYDKQWQSSWQ
Sbjct: 181 VDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ 240

[Close]
BLAST of CsaV3_4G004370 vs. NCBI nr
Match: XP_022984403.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 318.2 bits (814), Expect = 2.5e-83
Identity = 164/237 (69.20%), Postives = 181/237 (76.37%), Query Frame = 0 

Query: 1   MASIAISASLPRASNSNHVSMKKKQRVHLAKPGYSSTTKNPTPKVISTLDVVNRXXXXXX 60
           MASIAISAS  R+  SNHVS KK+Q    A+P YSS TKNPTP++I T DV NR      
Sbjct: 47  MASIAISASFRRSCTSNHVS-KKQQHARQARPTYSSMTKNPTPELIRTPDVGNR--DAAF 106

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEA 120
                                     + FTD+RWKNGTWDLNMFV+NGKMDWEGVIV EA
Sbjct: 107 DAPKRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEA 166

Query: 121 KRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDA 180
           KRRKFLE++PE ATNQEPV+FRSSIIPWW WLTKSYLPQAELLNGRAAMIGFFM Y VDA
Sbjct: 167 KRRKFLELYPETATNQEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDA 226

Query: 181 LTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQ 238
           LTG+GIVGQSGNFI K ALF+TVIGVLLFRQ++DIE LR +AEEATFYDKQWQ+SWQ
Sbjct: 227 LTGIGIVGQSGNFISKAALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQ 280

[Close]
BLAST of CsaV3_4G004370 vs. NCBI nr
Match: XP_023551912.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312.8 bits (800), Expect = 1.0e-81
Identity = 160/237 (67.51%), Postives = 181/237 (76.37%), Query Frame = 0 

Query: 1   MASIAISASLPRASNSNHVSMKKKQRVHLAKPGYSSTTKNPTPKVISTLDVVNRXXXXXX 60
           MASIAISAS PR+  SNHVS K +Q    A+P +SS TKNPTP++I T DV +R      
Sbjct: 1   MASIAISASFPRSCTSNHVS-KNQQHARQARPTHSSMTKNPTPELIRTPDVGDR---DAF 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEA 120
                                     + FTD+RWKNGTWDLNMFV+NGKMDWEGVIV EA
Sbjct: 61  DAPKRHGNVASATDKLEEDTDDLNHGKTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEA 120

Query: 121 KRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDA 180
           KRRKFLE++PE ATN EPV+FRSSIIPWW WLT+SYLPQAELLNGRAAMIGFFM Y VDA
Sbjct: 121 KRRKFLELYPETATNHEPVLFRSSIIPWWAWLTRSYLPQAELLNGRAAMIGFFMAYLVDA 180

Query: 181 LTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQ 238
           LTG+GIVGQSGNFI K+ALF+TVIGVLLFRQ++DIE LR +AEEATFYDKQWQ+SWQ
Sbjct: 181 LTGIGIVGQSGNFISKSALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQ 233

[Close]
BLAST of CsaV3_4G004370 vs. NCBI nr
Match: XP_022922577.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 312.0 bits (798), Expect = 1.8e-81
Identity = 161/237 (67.93%), Postives = 181/237 (76.37%), Query Frame = 0 

Query: 1   MASIAISASLPRASNSNHVSMKKKQRVHLAKPGYSSTTKNPTPKVISTLDVVNRXXXXXX 60
           MASIAISAS PR+  SNHVS K+++R   A+P YSS TKNPTP++I T  V +R      
Sbjct: 1   MASIAISASFPRSCTSNHVSNKQQRR--QARPTYSSMTKNPTPELIKTPYVGDR---DAL 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEA 120
                                     + FTD+RWKNGTWDLNMFV+NGKMDWEGVIV EA
Sbjct: 61  DAPKRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEA 120

Query: 121 KRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDA 180
           KRRKFLE++PE ATN EPV+FRSSIIPWW WLTKSYLPQAELLNGRAAMIGFFM Y VDA
Sbjct: 121 KRRKFLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDA 180

Query: 181 LTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQ 238
           LTG+GIVGQSGNFI K ALF+TVIGVLLFRQ++DIE LR +AEEATFYDKQWQ+SWQ
Sbjct: 181 LTGIGIVGQSGNFISKAALFVTVIGVLLFRQTKDIEGLRKLAEEATFYDKQWQASWQ 232

[Close]
BLAST of CsaV3_4G004370 vs. TAIR10
Match: AT4G17600.1 (Chlorophyll A-B binding family protein)

HSP 1 Score: 213.8 bits (543), Expect = 1.2e-55
Identity = 93/150 (62.00%), Postives = 119/150 (79.33%), Query Frame = 0 

Query: 88  RFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEAKRRKFLEIHPEAATNQEPVVFRSSIIP 147
           +F D RW NGTWDL  F ++GK DW+ VIV EAKRRK+LE +PE  +N EPV+F +SIIP
Sbjct: 101 KFQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIP 160

Query: 148 WWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDALTGVGIVGQSGNFICKTALFLTVIGVL 207
           WW W+ + +LP+AELLNGRAAMIGFFM Y VD+LTGVG+V Q GNF CKT LF+ V GVL
Sbjct: 161 WWAWIKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVL 220

Query: 208 LFRQSEDIENLRNIAEEATFYDKQWQSSWQ 238
             R++ED++ L+N+ +E T YDKQWQ++W+
Sbjct: 221 FIRKNEDVDKLKNLFDETTLYDKQWQAAWK 250

[Close]
BLAST of CsaV3_4G004370 vs. TAIR10
Match: AT5G47110.1 (Chlorophyll A-B binding family protein)

HSP 1 Score: 208.4 bits (529), Expect = 5.0e-54
Identity = 90/152 (59.21%), Postives = 120/152 (78.95%), Query Frame = 0 

Query: 88  RFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEAKRRKFLEIHPEAATNQEPVVFRSSIIP 147
           ++ + +W NGTWDL  F ++GK DW+ VIV EAKRRK+LE +PE  +N E VVF +SIIP
Sbjct: 98  KYQNAKWVNGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIP 157

Query: 148 WWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDALTGVGIVGQSGNFICKTALFLTVIGVL 207
           WW W+ + +LP+AELLNGRAAMIGFFM Y VD+LTGVG+V Q GNF CKT LF+ V GVL
Sbjct: 158 WWAWMKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVL 217

Query: 208 LFRQSEDIENLRNIAEEATFYDKQWQSSWQKP 240
             R++ED++ L+++ +E T YDKQWQ++W++P
Sbjct: 218 FIRKNEDLDKLKDLFDETTLYDKQWQAAWKEP 249

[Close]
BLAST of CsaV3_4G004370 vs. Swiss-Prot
Match: sp|Q9SYX1|LIL31_ARATH (Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.1 PE=1 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.1e-54
Identity = 93/150 (62.00%), Postives = 119/150 (79.33%), Query Frame = 0 

Query: 88  RFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEAKRRKFLEIHPEAATNQEPVVFRSSIIP 147
           +F D RW NGTWDL  F ++GK DW+ VIV EAKRRK+LE +PE  +N EPV+F +SIIP
Sbjct: 101 KFQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIP 160

Query: 148 WWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDALTGVGIVGQSGNFICKTALFLTVIGVL 207
           WW W+ + +LP+AELLNGRAAMIGFFM Y VD+LTGVG+V Q GNF CKT LF+ V GVL
Sbjct: 161 WWAWIKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVL 220

Query: 208 LFRQSEDIENLRNIAEEATFYDKQWQSSWQ 238
             R++ED++ L+N+ +E T YDKQWQ++W+
Sbjct: 221 FIRKNEDVDKLKNLFDETTLYDKQWQAAWK 250

[Close]
BLAST of CsaV3_4G004370 vs. Swiss-Prot
Match: sp|Q6NKS4|LIL32_ARATH (Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.2 PE=1 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 9.0e-53
Identity = 90/152 (59.21%), Postives = 120/152 (78.95%), Query Frame = 0 

Query: 88  RFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEAKRRKFLEIHPEAATNQEPVVFRSSIIP 147
           ++ + +W NGTWDL  F ++GK DW+ VIV EAKRRK+LE +PE  +N E VVF +SIIP
Sbjct: 98  KYQNAKWVNGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIP 157

Query: 148 WWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDALTGVGIVGQSGNFICKTALFLTVIGVL 207
           WW W+ + +LP+AELLNGRAAMIGFFM Y VD+LTGVG+V Q GNF CKT LF+ V GVL
Sbjct: 158 WWAWMKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVL 217

Query: 208 LFRQSEDIENLRNIAEEATFYDKQWQSSWQKP 240
             R++ED++ L+++ +E T YDKQWQ++W++P
Sbjct: 218 FIRKNEDLDKLKDLFDETTLYDKQWQAAWKEP 249

[Close]
BLAST of CsaV3_4G004370 vs. TrEMBL
Match: tr|A0A0A0KUF5|A0A0A0KUF5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025130 PE=4 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 5.4e-111
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0 

Query: 1   MASIAISASLPRASNSNHVSMKKKQRVHLAKPGYSSTTKNPTPKVISTLDVVNRXXXXXX 60
           MASIAISASLPRASNSNHVSMKKKQRVHLAKPGYSSTTKNPTPKVISTLDVVNRXXXXXX
Sbjct: 1   MASIAISASLPRASNSNHVSMKKKQRVHLAKPGYSSTTKNPTPKVISTLDVVNRXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEA 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEA
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEA 120

Query: 121 KRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDA 180
           KRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDA
Sbjct: 121 KRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDA 180

Query: 181 LTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQKPK 240
           LTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQKPK
Sbjct: 181 LTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQKPK 240

[Close]
BLAST of CsaV3_4G004370 vs. TrEMBL
Match: tr|A0A1S3BXB8|A0A1S3BXB8_CUCME (uncharacterized protein LOC103494445 OS=Cucumis melo OX=3656 GN=LOC103494445 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 1.5e-100
Identity = 224/241 (92.95%), Postives = 232/241 (96.27%), Query Frame = 0 

Query: 1   MASIAISASLPRASNSNHVSMKKKQR-VHLAKPGYSSTTKNPTPKVISTLDVVNR--XXX 60
           MASIAISASLPRA+N NHVSMKKKQ+  HLAKP YSS TKNPTPKVISTLDV NR  XXX
Sbjct: 1   MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXERFTDKRWKNGTWDLNMFVQNGKMDWEGVIV 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXERFTDKRWKNGTWDLNMFV+NGKMDWEGVIV
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV 120

Query: 121 EEAKRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYA 180
           EEAKRRKFLE+HPEAATN+EPV+FRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGY 
Sbjct: 121 EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG 180

Query: 181 VDALTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQ 239
           VDALTG+GIVGQSGNFICKTALFLTVIGVLLFRQSED+ENLRNIAEEATFYDKQWQSSWQ
Sbjct: 181 VDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ 240

[Close]
BLAST of CsaV3_4G004370 vs. TrEMBL
Match: tr|A0A1R3JIV9|A0A1R3JIV9_COCAP (Chlorophyll A-B binding protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_05810 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 2.8e-67
Identity = 135/241 (56.02%), Postives = 168/241 (69.71%), Query Frame = 0 

Query: 1   MASIAISASLPRASNSNHVSMKKKQRVHLAKPGYSSTTKNPTPKVISTLDVVNRXXXXXX 60
           MASI+ISASL RA +S HV  K+K    + KP YS  TK     V  TLD+  +      
Sbjct: 1   MASISISASLQRACSSQHVRRKQKP---IPKPTYSLGTKQVMKAV--TLDMEAQKGYKTD 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXE----RFTDKRWKNGTWDLNMFVQNGKMDWEGVI 120
                                     E    +F D+RWKNGTWDLNMFV+NG+MDW+ VI
Sbjct: 61  TKEEPASEMNYKSKDPEERLKEDFETESSAPKFRDERWKNGTWDLNMFVRNGRMDWDSVI 120

Query: 121 VEEAKRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGY 180
           + EA+RRKFLE+HPEA TN+EPV FRSSIIPWW WL ++YLP+AELLNGRAAMIGFFM Y
Sbjct: 121 IAEARRRKFLEMHPEATTNEEPVKFRSSIIPWWAWLMRTYLPEAELLNGRAAMIGFFMAY 180

Query: 181 AVDALTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSW 238
            VDALTG+ +VGQ+GNFICK  LF+TVIGVL+ R+++D +NL+ +A+EAT+YDKQWQ+SW
Sbjct: 181 IVDALTGLDVVGQTGNFICKAGLFVTVIGVLVLRKTQDFDNLKKLADEATYYDKQWQASW 236

[Close]
BLAST of CsaV3_4G004370 vs. TrEMBL
Match: tr|A0A1R3G2H4|A0A1R3G2H4_9ROSI (Chlorophyll A-B binding protein OS=Corchorus olitorius OX=93759 GN=COLO4_37307 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 2.8e-67
Identity = 135/240 (56.25%), Postives = 168/240 (70.00%), Query Frame = 0 

Query: 1   MASIAISASLPRASNSNHVSMKKKQRVHLAKPGYSSTTKNPTPKVISTLDVVNRXXXXXX 60
           MASI+ISASL RA +S H+  K+K    + KP YS  TK     V  TLD+  +      
Sbjct: 1   MASISISASLQRACSSQHIRRKQKP---IPKPTYSLGTKQVMNAV--TLDMEAQKGYKTE 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXE---RFTDKRWKNGTWDLNMFVQNGKMDWEGVIV 120
                                         +F D+RWKNGTWDLNMFV+NG+MDW+ VIV
Sbjct: 61  TKEEPASEMKKSKDPEERLKDEFETESSAPKFRDERWKNGTWDLNMFVRNGRMDWDSVIV 120

Query: 121 EEAKRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYA 180
            EA+RRKFLE+HPEA TN+EPV FRSSIIPWW WL ++YLP+AELLNGRAAMIGFFM Y 
Sbjct: 121 AEARRRKFLEMHPEATTNEEPVKFRSSIIPWWAWLIRTYLPEAELLNGRAAMIGFFMAYI 180

Query: 181 VDALTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQ 238
           VDALTG+ +VGQ+GNFICKT LF+TVIGV++ R+++D ENL+ +A+EAT+YDKQWQ+SW+
Sbjct: 181 VDALTGLDVVGQTGNFICKTGLFVTVIGVVVLRKTQDFENLKKLADEATYYDKQWQASWK 235

[Close]
BLAST of CsaV3_4G004370 vs. TrEMBL
Match: tr|A0A067DCY5|A0A067DCY5_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035926mg PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 6.2e-67
Identity = 135/246 (54.88%), Postives = 169/246 (68.70%), Query Frame = 0 

Query: 1   MASIAISASLPRASNSNHVSMKKKQRVHLAKPGYSSTTKNPTPKVI------STLDVVNR 60
           MAS AISAS  RA +SNHV+ K+  +    + G S  TK  +  V        +LD+V +
Sbjct: 1   MASFAISASSQRACSSNHVTKKQPSQ---TRTGRSLGTKQVSNVVALNVDGQKSLDIVEQ 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERFTDKRWKNGTWDLNMFVQNGKMDWEG 120
                                            +F D RWKNGTWDLNMFV++GKMDW+ 
Sbjct: 61  ----QDKSSKSSSRTSKPNVAENDDLDTQSSHPKFNDARWKNGTWDLNMFVKDGKMDWDA 120

Query: 121 VIVEEAKRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFM 180
           VIV EA+RRKFLE++P++ATN+EPVVFRSSIIPWW WL  SYLPQAELLNGRAAM+GFFM
Sbjct: 121 VIVAEARRRKFLEMYPDSATNEEPVVFRSSIIPWWAWLLHSYLPQAELLNGRAAMVGFFM 180

Query: 181 GYAVDALTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQS 240
           GY VDALTG+ +VGQ+GNFICK  +F+TV G++LFR++ED +NL+N+A+EAT YDKQWQ+
Sbjct: 181 GYIVDALTGLDVVGQTGNFICKAGVFVTVAGIILFRKNEDFQNLKNLADEATLYDKQWQA 239

The following BLAST results are available for this feature:
BLAST of CsaV3_4G004370 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146894.28.2e-111100.00PREDICTED: uncharacterized protein LOC101203022 [Cucumis sativus] >KGN53183.1 hy... [more]
XP_008453842.12.2e-10092.95PREDICTED: uncharacterized protein LOC103494445 [Cucumis melo][more]
XP_022984403.12.5e-8369.20light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita maxi... [more]
XP_023551912.11.0e-8167.51light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita pepo... [more]
XP_022922577.11.8e-8167.93light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita mosc... [more]
BLAST of CsaV3_4G004370 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G17600.11.2e-5562.00Chlorophyll A-B binding family protein[more]
AT5G47110.15.0e-5459.21Chlorophyll A-B binding family protein[more]
BLAST of CsaV3_4G004370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SYX1|LIL31_ARATH2.1e-5462.00Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis ... [more]
sp|Q6NKS4|LIL32_ARATH9.0e-5359.21Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis ... [more]
BLAST of CsaV3_4G004370 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KUF5|A0A0A0KUF5_CUCSA5.4e-111100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025130 PE=4 SV=1[more]
tr|A0A1S3BXB8|A0A1S3BXB8_CUCME1.5e-10092.95uncharacterized protein LOC103494445 OS=Cucumis melo OX=3656 GN=LOC103494445 PE=... [more]
tr|A0A1R3JIV9|A0A1R3JIV9_COCAP2.8e-6756.02Chlorophyll A-B binding protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_058... [more]
tr|A0A1R3G2H4|A0A1R3G2H4_9ROSI2.8e-6756.25Chlorophyll A-B binding protein OS=Corchorus olitorius OX=93759 GN=COLO4_37307 P... [more]
tr|A0A067DCY5|A0A067DCY5_CITSI6.2e-6754.88Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035926mg PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0016592 mediator complex
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G004370.1CsaV3_4G004370.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 72..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availablePANTHERPTHR14154UPF0041 BRAIN PROTEIN 44-RELATEDcoord: 40..238
NoneNo IPR availablePANTHERPTHR14154:SF13SUBFAMILY NOT NAMEDcoord: 40..238
NoneNo IPR availableSUPERFAMILYSSF103511Chlorophyll a-b binding proteincoord: 146..194

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G004370CSPI04G04280Wild cucumber (PI 183967)cpicucB213
CsaV3_4G004370CmoCh16G002500Cucurbita moschata (Rifu)cmocucB0384
CsaV3_4G004370Cp4.1LG14g05160Cucurbita pepo (Zucchini)cpecucB0262
CsaV3_4G004370CsGy4G004190Cucumber (Gy14) v2cgybcucB171
CsaV3_4G004370Carg16771Silver-seed gourdcarcucB0910
CsaV3_4G004370Cla010696Watermelon (97103) v1cucwmB324
CsaV3_4G004370MELO3C017629Melon (DHL92) v3.5.1cucmeB315
CsaV3_4G004370ClCG07G017170Watermelon (Charleston Gray)cucwcgB336
CsaV3_4G004370Lsi07G001350Bottle gourd (USVL1VR-Ls)cuclsiB322
CsaV3_4G004370MELO3C017629.2Melon (DHL92) v3.6.1cucmedB307
CsaV3_4G004370Cla97C07G144190Watermelon (97103) v2cucwmbB324
CsaV3_4G004370Bhi01G001989Wax gourdcucwgoB381
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G004370Cucumber (Chinese Long) v3cuccucB173
CsaV3_4G004370Silver-seed gourdcarcucB0405
CsaV3_4G004370Silver-seed gourdcarcucB0749
CsaV3_4G004370Cucumber (Gy14) v2cgybcucB228
CsaV3_4G004370Cucumber (Gy14) v1cgycucB102
CsaV3_4G004370Cucurbita maxima (Rimu)cmacucB0387
CsaV3_4G004370Cucurbita maxima (Rimu)cmacucB0842
CsaV3_4G004370Cucurbita moschata (Rifu)cmocucB0714
CsaV3_4G004370Cucurbita moschata (Rifu)cmocucB0828
CsaV3_4G004370Cucurbita pepo (Zucchini)cpecucB0498
CsaV3_4G004370Wild cucumber (PI 183967)cpicucB280
CsaV3_4G004370Bottle gourd (USVL1VR-Ls)cuclsiB266
CsaV3_4G004370Watermelon (Charleston Gray)cucwcgB297
CsaV3_4G004370Watermelon (97103) v1cucwmB347
CsaV3_4G004370Watermelon (97103) v2cucwmbB269