Cp4.1LG14g05160 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g05160
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionChlorophyll A-B binding protein
LocationCp4.1LG14 : 1082620 .. 1086596 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACAGCACAGCAAAACATTGTTAGCGCGGGCGTATTTCATTGCCTTGCGCCATCTATTTCAATCGCTTGCGGCTTTGGGGTTGAATGTAGCCATTGTTGAGAGCTCTGAACTTCGATCGCACGAGCTTTAAAGCTCAACATGTCGGAATCAATGGCTTCTAATCATGAATTAAACGAAGAAGCAGATGATAATCCATCATCGTAAGTGTGTTTCTTGGTTCCTTCTCGTGTTCTCTCATTTCCCCTCCTCTTTTATTTCTTTTTAGCTAATTCTTCCTTCCATTTTGCTATAGCTTCAATTCGAATTTCCTGTTCTGTTGAGCTGCTTGTGAATTAATCAATTTTCCTTTCCTGTTTGGCGAATCATTACCAGGCCTACGAATGTCTACAAAGATCCGGATGACGGGCGGCAGCGGTTCTTGCTCGAATTGGAATTTGTTCAATGTCTTGCCAATCCAACCTACATTCATTGTACGTTTTTGCATAATTTAGGGTTTCTATATATAGAATGTTAGGACGATTTCTAATGCTCGAAGTGAGGAAAAAGCTATTGGATGTTCCAAAACAATAGAGATTTTCGAGTTTCTTCATGTTTTAGTTAGAGAATTACTTCCAAACTCTTTCAGTTGAATTTAGTTTCAATTTGGAATTCTAATGAGCTAAATAGACAATCAAAAGATTTAGGTATTCAGAACCAAAGTGTGAGATACCATATCGGTTGGAGAGGGAAACGAAACATTCTTTATGAGGGTGTGGAAATCTCTCATAGTAGACACGTTTTAAAACCTTGAGGGGAACCTTGAAAGGGAAAGTCCAAAGAGGACAATATCTGCTAGCGGTAGGCTTGAGTTGTTACAAATGGTATCAGAGACAGACACCGAGCGGTATATGCCAGCGAAGATGTTGGGCCCCCAAAGGGGGTGGATTGTGAGATCCCACATTGGTTGGAGAGGGGAATGAAACATTCCTTACGAGGGTATGGAGTCGTAAGGAAACCTCTTCCTAGTAGATGCGTTTTAGAATCTTCTAGTAGACGCGTTTTAGAATCTTGAGAGGAACCTTGAAAGGGAAAGTCTAAAGAGGACAATATCTACTAGCGGTAGGCTTGGGTTGTTACAAATGGTATCAGAGACAGACACCAAGCAGTATGCCAGCGAGGACGTTGGGCCCTCAAAGGGGGTGGATTGTGAGATCCCACATTGGTAAGAGAGGGGAATGAAACATTCCTTAGGAGGGTGTGGAAACCTCTTCCTAATAGACGCTTTTTAGAACCTTGAGGGGAAGCTCAAAAGGGAAAGTAAAAACAGGACAATATCTGCTAGCCCTAGCCCTGAACTGGCATCTCTATGCCCTGATTAAGCTTGACTGCAAATGTAACTTACAGTTTTTACTTCAAAATTAATCTGTTATGAGCCTTCTCAACTCACGAGATGGGTGCTCGTTTGCTTGATCTTTCTTTCGATGATATGTTATGGTCTCGTACGACTTAAGTACGTTTCTGAACCTGTCACTTAAACTTCTTGTGGTTGCCATCTTCATGAACTCACTAGGATACTTCTTAACGAACGATGCTCGTTCAAATCGGTATCGAAATGTTGAATCAAATGCTTTTTATGGTTCGAGTTCTGATGGCTGATCACCGAGTTTTTATACAGATTTGGCTCAGAATCGTTACCTCGAGGACGAAGCTTTTATTGCTTACTTGAAGTACCTTCAATATTGGCAACAGCCAGAGTATATTAAGTACATAATGTGAGTAAGATCTTTCCTTCATGTTCTTCATAAGCTTTTCCTGAACTGAAGAATTAGAACTGAATCTGCTTTGGAATTCATTGTTGTTTCTTCTAGGTATCCTCATTGCCTCTTTTTTCTTGAACTTCTACAAAATGCAAACTTCCGAAATGCAATGGCTCATCCTGCCAACAAGGTTAACTTTTACATTTCATGTTCGTCGTGACTGATTGACGTCCATCGATTCCCGAGAGAAGATAATTTTTCGCTTTCCGAGTGGTTTGCTCTTTATGTGCTGAAATTGCCCTTTTCCTATTTCGTAGTATTTTGACCGTTGCGTCGTTTGGAATGTCTTAGGAACTGACACACAGGCAGCAATTTTACTTCTGGAAGAACTATCGGAACAATCGTTTGAAACACATTTTACCTCGACCCCTACTCGAACCTGCAGCTCAGGCACCTGTGTCGGCCCCAGCCCCTGCTATGGCAGCTTCTCCTGCTGGTACACCCCTTTCTCCAATGCAGTATGGTGTTCCCCCTGGTTCCGGGATTTCAAAGAACGATATGAAGAATGCAGGAATCGATCGACGAAAGAGAAAACACGTAATTTATCGCTTTATCAATGTGCTCTACTAGTAGGTTAGAAAACACCCTTTTCCCTTTTCCCTGCAAATTCTCATTTACTTCTTCTGTGTGTTGACAGGAAAGAAGTATGCCGTAGTTGGTGGATGCTGGATAGCAGCTCATGAGGTAATCTTTCATAAACTTAACTTTCCAAGAGCTTCCCATCACTTGGGATCATTCTTTTTGGCTTAATTCAAGTAAATGTTATAATTATTGTTATGGCGAGTTTTCGTACAACATTTTAATGTATCGAAGTTTTAAATTCTAAAAGATTTATACTTCAAGAGTACTTCCTGCTGCTTCCTCTCGAACTCGTTTAAAATTCTAAAGAATTTTGATTTCCGTCAAGCAACTTGTCATCTACATCATTATTTTATTAATATTTTCATAAAATTAAGATCTCGATATTTCTATCAGACACTGTCGTAAAATTTAGTGTTAACTTAAATCGAGGAATGACCTGCGAAACGCCCATAACCTCACCTGCAATTCCAGCATGGGCTGTGACAAGATAAGTTTCTTTTTGCATGGGCAACTTCTCTCTCTTTTCAATCCAAACCAGATTTTATCAGAGAAGGCCAAAATCAGAGCCAAAACAAGCGGCCACTAAACATAAAAGGAAGGCCAAAAGAGCTTAGAAATCTCAGACATGGCTTCAATTGCTATCTCTGCCTCATTTCCAAGATCATGTACTTCAAATCATGTCTCCAAGAACCAACAACATGCCCGTCAAGCCCGACCTACCCATTCCTCCATGACGAAAAACCCGACCCCAGAGCTAATCAGAACTCCCGATGTTGGTGACCGAGATGCCTTCGACGCTCCCAAACGTCATGGAAACGTTGCATCAGCTACGGACAAGCTAGAGGAAGATACTGATGATTTGAACCATGGCAAAACGTTCACAGATGAGAGATGGAAAAATGGGACATGGGATCTCAATATGTTTGTGAAGAATGGCAAGATGGATTGGGAAGGTGTTATCGTCGCAGGTGAGTGCATCGGATAATGTTAGATTAAAAAATAAACTTATTTATACTTTAATTAAACATGTTTATGACGAATTATAAGTTTGGATTAACATGGATTGGACATGTAGAAGCAAAGAGGAGGAAGTTTCTTGAATTGTATCCAGAAACAGCTACAAATCACGAACCAGTGCTCTTTAGAAGCTCCATTATACCTTGGTGGGCATGGCTCACCAGATCCTACCTCCCACAAGCCGAACTACTTAACGGTAACGTTGCAATCTTAACCTTAAACTTTTAAAAAAAATTGCAAGACTACCGTACGAATAAGAATCACTTTGTCTGAGCTATTCTCAAATTGGTTTGTTGTGTAGGTAGGGCAGCAATGATAGGGTTCTTCATGGCCTATCTAGTGGATGCATTAACAGGAATTGGAATAGTTGGGCAAAGTGGGAATTTCATAAGCAAATCAGCCCTTTTTGTAACAGTAATTGGTGTGTTACTATTTAGGCAAACCCAAGATATTGAGGGCTTAAGAAAGCTAGCTGAAGAAGCCACCTTCTATGACAAGCAATGGCAAGCTTCATGGCAAAACCAAAATGAAAATTCCACCTAGAAAATATATTTAATTTCTCTTTAATAATAATTTTATTT

mRNA sequence

CACAGCACAGCAAAACATTGTTAGCGCGGGCGTATTTCATTGCCTTGCGCCATCTATTTCAATCGCTTGCGGCTTTGGGGTTGAATGTAGCCATTGTTGAGAGCTCTGAACTTCGATCGCACGAGCTTTAAAGCTCAACATGTCGGAATCAATGGCTTCTAATCATGAATTAAACGAAGAAGCAGATGATAATCCATCATCGCCTACGAATGTCTACAAAGATCCGGATGACGGGCGGCAGCGGTTCTTGCTCGAATTGGAATTTGTTCAATGTCTTGCCAATCCAACCTACATTCATTATTTGGCTCAGAATCGTTACCTCGAGGACGAAGCTTTTATTGCTTACTTGAAGTACCTTCAATATTGGCAACAGCCAGAGTATATTAAGTACATAATGTATCCTCATTGCCTCTTTTTTCTTGAACTTCTACAAAATGCAAACTTCCGAAATGCAATGGCTCATCCTGCCAACAAGGAACTGACACACAGGCAGCAATTTTACTTCTGGAAGAACTATCGGAACAATCGTTTGAAACACATTTTACCTCGACCCCTACTCGAACCTGCAGCTCAGGCACCTGTGTCGGCCCCAGCCCCTGCTATGGCAGCTTCTCCTGCTGGTACACCCCTTTCTCCAATGCAGTATGGTGTTCCCCCTGGTTCCGGGATTTCAAAGAACGATATGAAGAATGCAGGAATCGATCGACGAAAGAGAAAACACGAAAGAAGTATGCCGTAGTTGGTGGATGCTGGATAGCAGCTCATGAGATTTTATCAGAGAAGGCCAAAATCAGAGCCAAAACAAGCGGCCACTAAACATAAAAGGAAGGCCAAAAGAGCTTAGAAATCTCAGACATGGCTTCAATTGCTATCTCTGCCTCATTTCCAAGATCATGTACTTCAAATCATGTCTCCAAGAACCAACAACATGCCCGTCAAGCCCGACCTACCCATTCCTCCATGACGAAAAACCCGACCCCAGAGCTAATCAGAACTCCCGATGTTGGTGACCGAGATGCCTTCGACGCTCCCAAACGTCATGGAAACGTTGCATCAGCTACGGACAAGCTAGAGGAAGATACTGATGATTTGAACCATGGCAAAACGTTCACAGATGAGAGATGGAAAAATGGGACATGGGATCTCAATATGTTTGTGAAGAATGGCAAGATGGATTGGGAAGGTGTTATCGTCGCAGAAGCAAAGAGGAGGAAGTTTCTTGAATTGTATCCAGAAACAGCTACAAATCACGAACCAGTGCTCTTTAGAAGCTCCATTATACCTTGGTGGGCATGGCTCACCAGATCCTACCTCCCACAAGCCGAACTACTTAACGGTAGGGCAGCAATGATAGGGTTCTTCATGGCCTATCTAGTGGATGCATTAACAGGAATTGGAATAGTTGGGCAAAGTGGGAATTTCATAAGCAAATCAGCCCTTTTTGTAACAGTAATTGGTGTGTTACTATTTAGGCAAACCCAAGATATTGAGGGCTTAAGAAAGCTAGCTGAAGAAGCCACCTTCTATGACAAGCAATGGCAAGCTTCATGGCAAAACCAAAATGAAAATTCCACCTAGAAAATATATTTAATTTCTCTTTAATAATAATTTTATTT

Coding sequence (CDS)

ATGGCTTCAATTGCTATCTCTGCCTCATTTCCAAGATCATGTACTTCAAATCATGTCTCCAAGAACCAACAACATGCCCGTCAAGCCCGACCTACCCATTCCTCCATGACGAAAAACCCGACCCCAGAGCTAATCAGAACTCCCGATGTTGGTGACCGAGATGCCTTCGACGCTCCCAAACGTCATGGAAACGTTGCATCAGCTACGGACAAGCTAGAGGAAGATACTGATGATTTGAACCATGGCAAAACGTTCACAGATGAGAGATGGAAAAATGGGACATGGGATCTCAATATGTTTGTGAAGAATGGCAAGATGGATTGGGAAGGTGTTATCGTCGCAGAAGCAAAGAGGAGGAAGTTTCTTGAATTGTATCCAGAAACAGCTACAAATCACGAACCAGTGCTCTTTAGAAGCTCCATTATACCTTGGTGGGCATGGCTCACCAGATCCTACCTCCCACAAGCCGAACTACTTAACGGTAGGGCAGCAATGATAGGGTTCTTCATGGCCTATCTAGTGGATGCATTAACAGGAATTGGAATAGTTGGGCAAAGTGGGAATTTCATAAGCAAATCAGCCCTTTTTGTAACAGTAATTGGTGTGTTACTATTTAGGCAAACCCAAGATATTGAGGGCTTAAGAAAGCTAGCTGAAGAAGCCACCTTCTATGACAAGCAATGGCAAGCTTCATGGCAAAACCAAAATGAAAATTCCACCTAG

Protein sequence

MASIAISASFPRSCTSNHVSKNQQHARQARPTHSSMTKNPTPELIRTPDVGDRDAFDAPKRHGNVASATDKLEEDTDDLNHGKTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKFLELYPETATNHEPVLFRSSIIPWWAWLTRSYLPQAELLNGRAAMIGFFMAYLVDALTGIGIVGQSGNFISKSALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQNQNENST
Homology
[Close]
BLAST of Cp4.1LG14g05160 vs. TrEMBL
Match: A0A0A0KUF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025130 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 2.8e-90
Identity = 175/237 (73.84%), Postives = 199/237 (83.97%), Query Frame = 1 

Query: 1   MASIAISASFPRSCTSNHVS-KNQQHARQARPTHSSMTKNPTPELIRTPDVGDRDAFDAP 60
           MASIAISAS PR+  SNHVS K +Q    A+P +SS TKNPTP++I T DV +RD   A 
Sbjct: 1   MASIAISASLPRASNSNHVSMKKKQRVHLAKPGYSSTTKNPTPKVISTLDVVNRDDGAAQ 60

Query: 61  K-RHGNVASATDKLEEDTDD--LNHGKTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEA 120
           + R GN ASA  K EED +D   N+G+ FTD+RWKNGTWDLNMFV+NGKMDWEGVIV EA
Sbjct: 61  QYRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEA 120

Query: 121 KRRKFLELYPETATNHEPVLFRSSIIPWWAWLTRSYLPQAELLNGRAAMIGFFMAYLVDA 180
           KRRKFLE++PE ATN EPV+FRSSIIPWW WLT+SYLPQAELLNGRAAMIGFFM Y VDA
Sbjct: 121 KRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDA 180

Query: 181 LTGIGIVGQSGNFISKSALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQ 234
           LTG+GIVGQSGNFI K+ALF+TVIGVLLFRQ++DIE LR +AEEATFYDKQWQ+SWQ
Sbjct: 181 LTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQ 237

[Close]
BLAST of Cp4.1LG14g05160 vs. TrEMBL
Match: A0A0B0N1D6_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_31994 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 3.8e-71
Identity = 141/246 (57.32%), Postives = 184/246 (74.80%), Query Frame = 1 

Query: 1   MASIAISASFPRSCTSNHVSKNQQHARQARPTHSSMTKNPTPELIRTPDVGDRDAFDAPK 60
           MASIAISAS  ++C+S+HV+K +QHA Q +P +S  TK     +  T DV  +  F   +
Sbjct: 231 MASIAISASLQKACSSHHVAK-KQHA-QTKPAYSLGTKQAIDAV--TIDVEGQKGFKIDE 290

Query: 61  RH------GNVASATDKLEEDTDDLNHGKTFTDERWKNGTWDLNMFVKNGKMDWEGVIVA 120
           +        N     DK     +  +  + F+DERWKNGTWDLNMFV+NG+MDW+ VIVA
Sbjct: 291 KDQPSPQINNSEGLEDKSANKLEIESSARKFSDERWKNGTWDLNMFVRNGRMDWDSVIVA 350

Query: 121 EAKRRKFLELYPETATNHEPVLFRSSIIPWWAWLTRSYLPQAELLNGRAAMIGFFMAYLV 180
           EAKRRK+LE+YPET +N EPV FRSSIIPWWAW  R+YLP+AELLNGRAAMIGFF AY+V
Sbjct: 351 EAKRRKYLEMYPETCSNQEPVQFRSSIIPWWAWFMRTYLPEAELLNGRAAMIGFFSAYVV 410

Query: 181 DALTGIGIVGQSGNFISKSALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQN 240
           D LTG+ ++GQ+GNFI K+ALF+TVIG++L R+T+D + LRKLA+E T+YDKQWQASW++
Sbjct: 411 DGLTGMDLIGQTGNFICKTALFMTVIGIVLLRKTRDFDNLRKLADEVTYYDKQWQASWKD 470

[Close]
BLAST of Cp4.1LG14g05160 vs. TrEMBL
Match: U5FMV2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s12260g PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 8.6e-71
Identity = 145/243 (59.67%), Postives = 178/243 (73.25%), Query Frame = 1 

Query: 1   MASIAISASFPRSCTSNHVSKNQQ-HARQARPTHSSM-TKNPTPELIRTPDVGDRDAFDA 60
           MASI+ISAS  R+C S+ V+K Q+  AR AR   S   T+  T  +     VG  +  + 
Sbjct: 1   MASISISASLHRTCGSHRVTKKQRPQARTARSLGSKQATRAVTLNVEGQRGVGMSEQQEK 60

Query: 61  PK-RHGNVASATDKLEEDTDDLNHGKTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAK 120
           P    G    A DKLE   +  +    F DERWK GTWDLNMFV++GKMDW+G+I AEAK
Sbjct: 61  PALATGGSNKANDKLENGLETKHSVPKFIDERWKKGTWDLNMFVRDGKMDWDGLIEAEAK 120

Query: 121 RRKFLELYPETATNHEPVLFRSSIIPWWAWLTRSYLPQAELLNGRAAMIGFFMAYLVDAL 180
           RRK +ELYP T TN EPVLFRSSIIPWWAWL RSYLP+AELLNGRAAM+GFF AY+V+ L
Sbjct: 121 RRKIIELYPNTCTNEEPVLFRSSIIPWWAWLKRSYLPEAELLNGRAAMVGFFAAYIVEGL 180

Query: 181 TGIGIVGQSGNFISKSALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQNQNE 240
           TG+ +VGQ+GNFI K+ LFVTV G++LFR+T+D + LRKL +EATFYDKQWQASW++QN 
Sbjct: 181 TGLDMVGQTGNFICKTVLFVTVTGIILFRRTEDFKNLRKLVDEATFYDKQWQASWKDQNA 240

[Close]
BLAST of Cp4.1LG14g05160 vs. TrEMBL
Match: A0A0D2LV26_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G052300 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 3.3e-70
Identity = 140/246 (56.91%), Postives = 184/246 (74.80%), Query Frame = 1 

Query: 1   MASIAISASFPRSCTSNHVSKNQQHARQARPTHSSMTKNPTPELIRTPDVGDRDAFDAPK 60
           MASIA+SAS  R+C+S+HV+K +QHA Q +P +S  TK     +  T DV  +  F   +
Sbjct: 1   MASIAMSASLQRACSSHHVTK-KQHA-QTKPAYSLGTKQAIDAV--TIDVEGQKGFKIDE 60

Query: 61  RHG------NVASATDKLEEDTDDLNHGKTFTDERWKNGTWDLNMFVKNGKMDWEGVIVA 120
           +        N     DK     +  +  + F+DERWKNGTWDLNMFV+NG+MDW+ VIVA
Sbjct: 61  KDKPSPQIKNSEGLEDKSANKFEIESSARKFSDERWKNGTWDLNMFVRNGRMDWDSVIVA 120

Query: 121 EAKRRKFLELYPETATNHEPVLFRSSIIPWWAWLTRSYLPQAELLNGRAAMIGFFMAYLV 180
           EAKRRK+LE+YPET +N EPV FRSSIIPWWAW  R++LP+AELLNGRAAMIGFF AY+V
Sbjct: 121 EAKRRKYLEMYPETCSNQEPVQFRSSIIPWWAWFMRTHLPEAELLNGRAAMIGFFSAYVV 180

Query: 181 DALTGIGIVGQSGNFISKSALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQN 240
           D LTG+ ++GQ+GNFI K+ALF+TVIG++L R+T+D + LRKLA+E T+YDKQWQASW++
Sbjct: 181 DGLTGMDLIGQTGNFICKTALFMTVIGIVLLRKTRDFDNLRKLADEVTYYDKQWQASWKD 240

[Close]
BLAST of Cp4.1LG14g05160 vs. TrEMBL
Match: A0A067DCY5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035926mg PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 4.3e-70
Identity = 142/241 (58.92%), Postives = 175/241 (72.61%), Query Frame = 1 

Query: 1   MASIAISASFPRSCTSNHVSKNQQHARQARPTHSSMTKNPTPELIRTPDVGDR--DAFDA 60
           MAS AISAS  R+C+SNHV+K Q    Q R   S  TK  +  +    D G +  D  + 
Sbjct: 1   MASFAISASSQRACSSNHVTKKQPS--QTRTGRSLGTKQVSNVVALNVD-GQKSLDIVEQ 60

Query: 61  PKRHGNVASATDKLE----EDTDDLNHGKTFTDERWKNGTWDLNMFVKNGKMDWEGVIVA 120
             +    +S T K      +D D  +    F D RWKNGTWDLNMFVK+GKMDW+ VIVA
Sbjct: 61  QDKSSKSSSRTSKPNVAENDDLDTQSSHPKFNDARWKNGTWDLNMFVKDGKMDWDAVIVA 120

Query: 121 EAKRRKFLELYPETATNHEPVLFRSSIIPWWAWLTRSYLPQAELLNGRAAMIGFFMAYLV 180
           EA+RRKFLE+YP++ATN EPV+FRSSIIPWWAWL  SYLPQAELLNGRAAM+GFFM Y+V
Sbjct: 121 EARRRKFLEMYPDSATNEEPVVFRSSIIPWWAWLLHSYLPQAELLNGRAAMVGFFMGYIV 180

Query: 181 DALTGIGIVGQSGNFISKSALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQN 236
           DALTG+ +VGQ+GNFI K+ +FVTV G++LFR+ +D + L+ LA+EAT YDKQWQASWQ+
Sbjct: 181 DALTGLDVVGQTGNFICKAGVFVTVAGIILFRKNEDFQNLKNLADEATLYDKQWQASWQD 238

[Close]
BLAST of Cp4.1LG14g05160 vs. TAIR10
Match: AT4G17600.1 (AT4G17600.1 Chlorophyll A-B binding family protein)

HSP 1 Score: 218.0 bits (554), Expect = 6.3e-57
Identity = 100/155 (64.52%), Postives = 122/155 (78.71%), Query Frame = 1 

Query: 85  FTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKFLELYPETATNHEPVLFRSSIIPW 144
           F D RW NGTWDL  F K+GK DW+ VIVAEAKRRK+LE  PET +N EPVLF +SIIPW
Sbjct: 102 FQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPW 161

Query: 145 WAWLTRSYLPQAELLNGRAAMIGFFMAYLVDALTGIGIVGQSGNFISKSALFVTVIGVLL 204
           WAW+ R +LP+AELLNGRAAMIGFFMAY VD+LTG+G+V Q GNF  K+ LFV V GVL 
Sbjct: 162 WAWIKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLF 221

Query: 205 FRQTQDIEGLRKLAEEATFYDKQWQASWQNQNENS 240
            R+ +D++ L+ L +E T YDKQWQA+W+N ++ S
Sbjct: 222 IRKNEDVDKLKNLFDETTLYDKQWQAAWKNDDDES 256

[Close]
BLAST of Cp4.1LG14g05160 vs. TAIR10
Match: AT5G47110.1 (AT5G47110.1 Chlorophyll A-B binding family protein)

HSP 1 Score: 202.6 bits (514), Expect = 2.7e-52
Identity = 100/208 (48.08%), Postives = 139/208 (66.83%), Query Frame = 1 

Query: 32  THSSMTKNPTPELIRTPDVGDRDAFDAPKRHGNVASATDKLEEDTDDLNHGKTFTDERWK 91
           T S + + P P  +   +V  +   ++     N A   +  +  T+ +     + + +W 
Sbjct: 49  TTSPVVEIPKPASVAVEEVPVKSPAESSSASENGAVGGEATDSSTETVIK---YQNAKWV 108

Query: 92  NGTWDLNMFVKNGKMDWEGVIVAEAKRRKFLELYPETATNHEPVLFRSSIIPWWAWLTRS 151
           NGTWDL  F K+GK DW+ VIV+EAKRRK+LE  PET +N E V+F +SIIPWWAW+ R 
Sbjct: 109 NGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIPWWAWMKRY 168

Query: 152 YLPQAELLNGRAAMIGFFMAYLVDALTGIGIVGQSGNFISKSALFVTVIGVLLFRQTQDI 211
           +LP+AELLNGRAAMIGFFMAY VD+LTG+G+V Q GNF  K+ LFV V GVL  R+ +D+
Sbjct: 169 HLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDL 228

Query: 212 EGLRKLAEEATFYDKQWQASWQNQNENS 240
           + L+ L +E T YDKQWQA+W+  + ++
Sbjct: 229 DKLKDLFDETTLYDKQWQAAWKEPDSST 253

[Close]
BLAST of Cp4.1LG14g05160 vs. NCBI nr
Match: gi|659107757|ref|XP_008453842.1| (PREDICTED: uncharacterized protein LOC103494445 [Cucumis melo])

HSP 1 Score: 356.3 bits (913), Expect = 4.2e-95
Identity = 185/242 (76.45%), Postives = 206/242 (85.12%), Query Frame = 1 

Query: 1   MASIAISASFPRSCTSNHVS--KNQQHARQARPTHSSMTKNPTPELIRTPDVGDRDAFDA 60
           MASIAISAS PR+   NHVS  K QQHA  A+P +SSMTKNPTP++I T DVG+RD   A
Sbjct: 1   MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGAA 60

Query: 61  PKRH---GNVAS-ATDKLEEDTDDLNH-GKTFTDERWKNGTWDLNMFVKNGKMDWEGVIV 120
            ++H   GNVAS A  K+EED DD N+ G+ FTD+RWKNGTWDLNMFVKNGKMDWEGVIV
Sbjct: 61  QQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV 120

Query: 121 AEAKRRKFLELYPETATNHEPVLFRSSIIPWWAWLTRSYLPQAELLNGRAAMIGFFMAYL 180
            EAKRRKFLEL+PE ATN EPVLFRSSIIPWW WLT+SYLPQAELLNGRAAMIGFFM Y 
Sbjct: 121 EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG 180

Query: 181 VDALTGIGIVGQSGNFISKSALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQ 236
           VDALTGIGIVGQSGNFI K+ALF+TVIGVLLFRQ++D+E LR +AEEATFYDKQWQ+SWQ
Sbjct: 181 VDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ 240

[Close]
BLAST of Cp4.1LG14g05160 vs. NCBI nr
Match: gi|778690322|ref|XP_004146894.2| (PREDICTED: uncharacterized protein LOC101203022 [Cucumis sativus])

HSP 1 Score: 339.7 bits (870), Expect = 4.1e-90
Identity = 175/237 (73.84%), Postives = 199/237 (83.97%), Query Frame = 1 

Query: 1   MASIAISASFPRSCTSNHVS-KNQQHARQARPTHSSMTKNPTPELIRTPDVGDRDAFDAP 60
           MASIAISAS PR+  SNHVS K +Q    A+P +SS TKNPTP++I T DV +RD   A 
Sbjct: 1   MASIAISASLPRASNSNHVSMKKKQRVHLAKPGYSSTTKNPTPKVISTLDVVNRDDGAAQ 60

Query: 61  K-RHGNVASATDKLEEDTDD--LNHGKTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEA 120
           + R GN ASA  K EED +D   N+G+ FTD+RWKNGTWDLNMFV+NGKMDWEGVIV EA
Sbjct: 61  QYRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEA 120

Query: 121 KRRKFLELYPETATNHEPVLFRSSIIPWWAWLTRSYLPQAELLNGRAAMIGFFMAYLVDA 180
           KRRKFLE++PE ATN EPV+FRSSIIPWW WLT+SYLPQAELLNGRAAMIGFFM Y VDA
Sbjct: 121 KRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDA 180

Query: 181 LTGIGIVGQSGNFISKSALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQ 234
           LTG+GIVGQSGNFI K+ALF+TVIGVLLFRQ++DIE LR +AEEATFYDKQWQ+SWQ
Sbjct: 181 LTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQ 237

[Close]
BLAST of Cp4.1LG14g05160 vs. NCBI nr
Match: gi|728825740|gb|KHG06387.1| (hypothetical protein F383_31994 [Gossypium arboreum])

HSP 1 Score: 276.2 bits (705), Expect = 5.5e-71
Identity = 141/246 (57.32%), Postives = 184/246 (74.80%), Query Frame = 1 

Query: 1   MASIAISASFPRSCTSNHVSKNQQHARQARPTHSSMTKNPTPELIRTPDVGDRDAFDAPK 60
           MASIAISAS  ++C+S+HV+K +QHA Q +P +S  TK     +  T DV  +  F   +
Sbjct: 231 MASIAISASLQKACSSHHVAK-KQHA-QTKPAYSLGTKQAIDAV--TIDVEGQKGFKIDE 290

Query: 61  RH------GNVASATDKLEEDTDDLNHGKTFTDERWKNGTWDLNMFVKNGKMDWEGVIVA 120
           +        N     DK     +  +  + F+DERWKNGTWDLNMFV+NG+MDW+ VIVA
Sbjct: 291 KDQPSPQINNSEGLEDKSANKLEIESSARKFSDERWKNGTWDLNMFVRNGRMDWDSVIVA 350

Query: 121 EAKRRKFLELYPETATNHEPVLFRSSIIPWWAWLTRSYLPQAELLNGRAAMIGFFMAYLV 180
           EAKRRK+LE+YPET +N EPV FRSSIIPWWAW  R+YLP+AELLNGRAAMIGFF AY+V
Sbjct: 351 EAKRRKYLEMYPETCSNQEPVQFRSSIIPWWAWFMRTYLPEAELLNGRAAMIGFFSAYVV 410

Query: 181 DALTGIGIVGQSGNFISKSALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQN 240
           D LTG+ ++GQ+GNFI K+ALF+TVIG++L R+T+D + LRKLA+E T+YDKQWQASW++
Sbjct: 411 DGLTGMDLIGQTGNFICKTALFMTVIGIVLLRKTRDFDNLRKLADEVTYYDKQWQASWKD 470

[Close]
BLAST of Cp4.1LG14g05160 vs. NCBI nr
Match: gi|225454884|ref|XP_002275690.1| (PREDICTED: uncharacterized protein LOC100259582 [Vitis vinifera])

HSP 1 Score: 275.8 bits (704), Expect = 7.2e-71
Identity = 144/246 (58.54%), Postives = 181/246 (73.58%), Query Frame = 1 

Query: 2   ASIAISASFPRSCTSNHVSKNQQHARQARPTHSSMTKNPTPEL-IRTPDVGDRDAFDAPK 61
           +SIAI+AS  R+C+ +HV+K QQ   QARP  S  TK  T  + + T      +  +   
Sbjct: 3   SSIAITASLQRACSPHHVTKKQQP--QARPARSMGTKQETHVVALETEGPKGLNIAEQEA 62

Query: 62  RHG-NVASATDKLEEDTDDLNHGK---------TFTDERWKNGTWDLNMFVKNGKMDWEG 121
           + G N  S+T    +  DD   G           F+DERWKNGTWDLNMFV++GKMDW+G
Sbjct: 63  KFGFNAGSSTTTSRDAKDDDEAGSGLDTEPSAPKFSDERWKNGTWDLNMFVRDGKMDWDG 122

Query: 122 VIVAEAKRRKFLELYPETATNHEPVLFRSSIIPWWAWLTRSYLPQAELLNGRAAMIGFFM 181
           VIVAEA+RRKFLE+YPE+ATN EPVLFRSSIIPWWAW+ RS+L +AEL+NGRAAM+GFFM
Sbjct: 123 VIVAEARRRKFLEMYPESATNQEPVLFRSSIIPWWAWMMRSHLQEAELINGRAAMVGFFM 182

Query: 182 AYLVDALTGIGIVGQSGNFISKSALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQA 237
           AYLVDALTG+ +VGQ+GN I K+ L VTV+GV+ FR+ QD + LRKLA+EAT YDKQWQ+
Sbjct: 183 AYLVDALTGLDVVGQTGNLICKAGLLVTVMGVIFFRRAQDFDSLRKLADEATLYDKQWQS 242

[Close]
BLAST of Cp4.1LG14g05160 vs. NCBI nr
Match: gi|566207215|ref|XP_006374588.1| (hypothetical protein POPTR_0015s12260g [Populus trichocarpa])

HSP 1 Score: 275.0 bits (702), Expect = 1.2e-70
Identity = 145/243 (59.67%), Postives = 178/243 (73.25%), Query Frame = 1 

Query: 1   MASIAISASFPRSCTSNHVSKNQQ-HARQARPTHSSM-TKNPTPELIRTPDVGDRDAFDA 60
           MASI+ISAS  R+C S+ V+K Q+  AR AR   S   T+  T  +     VG  +  + 
Sbjct: 1   MASISISASLHRTCGSHRVTKKQRPQARTARSLGSKQATRAVTLNVEGQRGVGMSEQQEK 60

Query: 61  PK-RHGNVASATDKLEEDTDDLNHGKTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAK 120
           P    G    A DKLE   +  +    F DERWK GTWDLNMFV++GKMDW+G+I AEAK
Sbjct: 61  PALATGGSNKANDKLENGLETKHSVPKFIDERWKKGTWDLNMFVRDGKMDWDGLIEAEAK 120

Query: 121 RRKFLELYPETATNHEPVLFRSSIIPWWAWLTRSYLPQAELLNGRAAMIGFFMAYLVDAL 180
           RRK +ELYP T TN EPVLFRSSIIPWWAWL RSYLP+AELLNGRAAM+GFF AY+V+ L
Sbjct: 121 RRKIIELYPNTCTNEEPVLFRSSIIPWWAWLKRSYLPEAELLNGRAAMVGFFAAYIVEGL 180

Query: 181 TGIGIVGQSGNFISKSALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQNQNE 240
           TG+ +VGQ+GNFI K+ LFVTV G++LFR+T+D + LRKL +EATFYDKQWQASW++QN 
Sbjct: 181 TGLDMVGQTGNFICKTVLFVTVTGIILFRRTEDFKNLRKLVDEATFYDKQWQASWKDQNA 240

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g05160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g05160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUF5_CUCSA2.8e-9073.84Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025130 PE=4 SV=1[more]
A0A0B0N1D6_GOSAR3.8e-7157.32Uncharacterized protein OS=Gossypium arboreum GN=F383_31994 PE=4 SV=1[more]
U5FMV2_POPTR8.6e-7159.67Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s12260g PE=4 SV=1[more]
A0A0D2LV26_GOSRA3.3e-7056.91Uncharacterized protein OS=Gossypium raimondii GN=B456_001G052300 PE=4 SV=1[more]
A0A067DCY5_CITSI4.3e-7058.92Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035926mg PE=4 SV=1[more]
BLAST of Cp4.1LG14g05160 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G17600.16.3e-5764.52 Chlorophyll A-B binding family protein[more]
AT5G47110.12.7e-5248.08 Chlorophyll A-B binding family protein[more]
BLAST of Cp4.1LG14g05160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659107757|ref|XP_008453842.1|4.2e-9576.45PREDICTED: uncharacterized protein LOC103494445 [Cucumis melo][more]
gi|778690322|ref|XP_004146894.2|4.1e-9073.84PREDICTED: uncharacterized protein LOC101203022 [Cucumis sativus][more]
gi|728825740|gb|KHG06387.1|5.5e-7157.32hypothetical protein F383_31994 [Gossypium arboreum][more]
gi|225454884|ref|XP_002275690.1|7.2e-7158.54PREDICTED: uncharacterized protein LOC100259582 [Vitis vinifera][more]
gi|566207215|ref|XP_006374588.1|1.2e-7059.67hypothetical protein POPTR_0015s12260g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023329Chlorophyll_a/b-bd_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0016592 mediator complex
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g05160.1Cp4.1LG14g05160.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023329Chlorophyll a/b binding protein domainunknownSSF103511Chlorophyll a-b binding proteincoord: 129..190
score: 9.42
NoneNo IPR availableGENE3DG3DSA:1.20.1620.10coord: 148..184
score: 1.
NoneNo IPR availablePANTHERPTHR14154UPF0041 BRAIN PROTEIN 44-RELATEDcoord: 85..234
score: 6.6
NoneNo IPR availablePANTHERPTHR14154:SF13SUBFAMILY NOT NAMEDcoord: 85..234
score: 6.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g05160CmoCh16G002500Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g05160Cla010696Watermelon (97103) v1cpewmB224
Cp4.1LG14g05160Csa4G025130Cucumber (Chinese Long) v2cpecuB218
Cp4.1LG14g05160MELO3C017629Melon (DHL92) v3.5.1cpemeB202
Cp4.1LG14g05160ClCG07G017170Watermelon (Charleston Gray)cpewcgB211
Cp4.1LG14g05160CSPI04G04280Wild cucumber (PI 183967)cpecpiB220
Cp4.1LG14g05160Lsi07G001350Bottle gourd (USVL1VR-Ls)cpelsiB182
Cp4.1LG14g05160MELO3C017629.2Melon (DHL92) v3.6.1cpemedB244
Cp4.1LG14g05160CsaV3_4G004370Cucumber (Chinese Long) v3cpecucB0262
Cp4.1LG14g05160Bhi01G001989Wax gourdcpewgoB0299
Cp4.1LG14g05160CsGy4G004190Cucumber (Gy14) v2cgybcpeB484
Cp4.1LG14g05160Carg16771Silver-seed gourdcarcpeB1215
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g05160Cucurbita pepo (Zucchini)cpecpeB234
Cp4.1LG14g05160Cucumber (Gy14) v1cgycpeB0187
Cp4.1LG14g05160Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g05160Cucurbita maxima (Rimu)cmacpeB715
Cp4.1LG14g05160Cucurbita moschata (Rifu)cmocpeB668
Cp4.1LG14g05160Silver-seed gourdcarcpeB0523