Carg16771 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16771
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Chlorophyll A-B binding protein
Location	Cucurbita_argyrosperma_scaffold_087 : 417579 .. 418585 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAATTGCTATCTCTGCCTCATTTCCAAGATCATGTACTTCAAATCATGTCTCCAACAAGCAACAACATGCCCGTCAAACCCGACCTACCTATTCCTCCATGACGAAAAACCCGACCCCAGAGCTAATCAAAACTCCCAACGTTGGCGACCGAGATGCCTTCGACGCTCCCAAACGTCATGGAAACGTTGCATCAGCTACGGACAAGCTAGAGGAAGATACTGATGATATGAACCATGGACAAACGTTCACAGATGAGAGATGGAAAAATGGGACATGGGATCTCAATATGTTTGTGAAGAATGGCAAGATGGATTGGGAAGGTGTTATCGTCGCAGGTGAGTGCTTCAGATAATTTTAGGTTAAAAAATAAACTTAATTAGAACATATTTATCCATTTCATTACCTTAATTAAACATGTTTATGCCAAATTATAAGTTTGGATTAACATAAATTGGACATGTAGAAGCAAAGAGGAGGAAGTTTCTTGAATTGTATCCAGAAACAGCTACAAATCACGAACCAGTGCTCTTTAGAAGCTCCATTATACCTTGGTGGGCATGGCTCACCAAATCCTACCTCCCACAAGCCGAACTACTTAACGGTAATGTGGCAATCTTAACCTTAAACTTTAGAGACGGTTGCAAAATTAGCTAATATGTTCTAGCTCTTCGACGAAAATAAATTAATAAAAAAATTTAATTTTTAACAAAAATAATAAAGAAAAAATTGCAAGACTACCATAAGAATCAGACGAGCTATTCTCAAACTGGTTTGTTACTTAGACTACTATAAGAATCAGACGAGCTATTCTCAAACTTGGTTTGTTACTTGGTGTAGGTAGGGCAGCAATGATAGGGTTCTTCATGGCCTATCTAGTGGATGCATTAACAGGAATTGGAATAGTTGGGCAAAGTGGTAATTTCATAAGCAAATCAGCCCTTTTTGTAACGGTCATTGGTGTGTTAGTGTTTAGGCAAACCCAAGATATTGAGGGCTTAA

mRNA sequence

ATGGCTTCAATTGCTATCTCTGCCTCATTTCCAAGATCATGTACTTCAAATCATGTCTCCAACAAGCAACAACATGCCCGTCAAACCCGACCTACCTATTCCTCCATGACGAAAAACCCGACCCCAGAGCTAATCAAAACTCCCAACGTTGGCGACCGAGATGCCTTCGACGCTCCCAAACGTCATGGAAACGTTGCATCAGCTACGGACAAGCTAGAGGAAGATACTGATGATATGAACCATGGACAAACGTTCACAGATGAGAGATGGAAAAATGGGACATGGGATCTCAATATGTTTGTGAAGAATGGCAAGATGGATTGGGAAGGTGTTATCGTCGCAGAAGCAAAGAGGAGGAAGTTTCTTGAATTGTATCCAGAAACAGCTACAAATCACGAACCAGTGCTCTTTAGAAGCTCCATTATACCTTGGTGGGCATGGCTCACCAAATCCTACCTCCCACAAGCCGAACTACTTAACGGTAGGGCAGCAATGATAGGGTTCTTCATGGCCTATCTAGTGGATGCATTAACAGGAATTGGAATAGTTGGGCAAAGTGGTAATTTCATAAGCAAATCAGCCCTTTTTGTAACGTGTTTAGGCAAACCCAAGATATTGAGGGCTTAA

Coding sequence (CDS)

ATGGCTTCAATTGCTATCTCTGCCTCATTTCCAAGATCATGTACTTCAAATCATGTCTCCAACAAGCAACAACATGCCCGTCAAACCCGACCTACCTATTCCTCCATGACGAAAAACCCGACCCCAGAGCTAATCAAAACTCCCAACGTTGGCGACCGAGATGCCTTCGACGCTCCCAAACGTCATGGAAACGTTGCATCAGCTACGGACAAGCTAGAGGAAGATACTGATGATATGAACCATGGACAAACGTTCACAGATGAGAGATGGAAAAATGGGACATGGGATCTCAATATGTTTGTGAAGAATGGCAAGATGGATTGGGAAGGTGTTATCGTCGCAGAAGCAAAGAGGAGGAAGTTTCTTGAATTGTATCCAGAAACAGCTACAAATCACGAACCAGTGCTCTTTAGAAGCTCCATTATACCTTGGTGGGCATGGCTCACCAAATCCTACCTCCCACAAGCCGAACTACTTAACGGTAGGGCAGCAATGATAGGGTTCTTCATGGCCTATCTAGTGGATGCATTAACAGGAATTGGAATAGTTGGGCAAAGTGGTAATTTCATAAGCAAATCAGCCCTTTTTGTAACGTGTTTAGGCAAACCCAAGATATTGAGGGCTTAA

Protein sequence

MASIAISASFPRSCTSNHVSNKQQHARQTRPTYSSMTKNPTPELIKTPNVGDRDAFDAPKRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKFLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALTGIGIVGQSGNFISKSALFVTCLGKPKILRA

Homology

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BLAST of Carg16771 vs. NCBI nr
Match: XP_023551912.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 391.0 bits (1003), Expect = 2.6e-105
Identity = 190/201 (94.53%), Postives = 197/201 (98.01%), Query Frame = 0


Query: 1   MASIAISASFPRSCTSNHVSNKQQHARQTRPTYSSMTKNPTPELIKTPNVGDRDAFDAPK 60
           MASIAISASFPRSCTSNHVS  QQHARQ RPT+SSMTKNPTPELI+TP+VGDRDAFDAPK
Sbjct: 1   MASIAISASFPRSCTSNHVSKNQQHARQARPTHSSMTKNPTPELIRTPDVGDRDAFDAPK 60

Query: 61  RHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRK 120
           RHGNVASATDKLEEDTDD+NHG+TFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRK
Sbjct: 61  RHGNVASATDKLEEDTDDLNHGKTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRK 120

Query: 121 FLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALTGI 180
           FLELYPETATNHEPVLFRSSIIPWWAWLT+SYLPQAELLNGRAAMIGFFMAYLVDALTGI
Sbjct: 121 FLELYPETATNHEPVLFRSSIIPWWAWLTRSYLPQAELLNGRAAMIGFFMAYLVDALTGI 180

Query: 181 GIVGQSGNFISKSALFVTCLG 202
           GIVGQSGNFISKSALFVT +G
Sbjct: 181 GIVGQSGNFISKSALFVTVIG 201

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BLAST of Carg16771 vs. NCBI nr
Match: XP_022922577.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 388.3 bits (996), Expect = 1.7e-104
Identity = 193/201 (96.02%), Postives = 195/201 (97.01%), Query Frame = 0


Query: 1   MASIAISASFPRSCTSNHVSNKQQHARQTRPTYSSMTKNPTPELIKTPNVGDRDAFDAPK 60
           MASIAISASFPRSCTSNHVSNKQQ  RQ RPTYSSMTKNPTPELIKTP VGDRDA DAPK
Sbjct: 1   MASIAISASFPRSCTSNHVSNKQQR-RQARPTYSSMTKNPTPELIKTPYVGDRDALDAPK 60

Query: 61  RHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRK 120
           RHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRK
Sbjct: 61  RHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRK 120

Query: 121 FLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALTGI 180
           FLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALTGI
Sbjct: 121 FLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALTGI 180

Query: 181 GIVGQSGNFISKSALFVTCLG 202
           GIVGQSGNFISK+ALFVT +G
Sbjct: 181 GIVGQSGNFISKAALFVTVIG 200

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BLAST of Carg16771 vs. NCBI nr
Match: XP_022984403.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 384.4 bits (986), Expect = 2.4e-103
Identity = 191/202 (94.55%), Postives = 196/202 (97.03%), Query Frame = 0


Query: 1   MASIAISASFPRSCTSNHVSNKQQHARQTRPTYSSMTKNPTPELIKTPNVGDRD-AFDAP 60
           MASIAISASF RSCTSNHVS KQQHARQ RPTYSSMTKNPTPELI+TP+VG+RD AFDAP
Sbjct: 47  MASIAISASFRRSCTSNHVSKKQQHARQARPTYSSMTKNPTPELIRTPDVGNRDAAFDAP 106

Query: 61  KRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRR 120
           KRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRR
Sbjct: 107 KRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRR 166

Query: 121 KFLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALTG 180
           KFLELYPETATN EPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALTG
Sbjct: 167 KFLELYPETATNQEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALTG 226

Query: 181 IGIVGQSGNFISKSALFVTCLG 202
           IGIVGQSGNFISK+ALFVT +G
Sbjct: 227 IGIVGQSGNFISKAALFVTVIG 248

[Close]

BLAST of Carg16771 vs. NCBI nr
Match: XP_022141114.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Momordica charantia])

HSP 1 Score: 280.4 bits (716), Expect = 4.9e-72
Identity = 150/206 (72.82%), Postives = 164/206 (79.61%), Query Frame = 0


Query: 1   MASI--AISASFPRSCTS-NHVSNKQQHAR-QTRPTYSSMTKNPTPELIKTPNV--GDRD 60
           MASI  AISAS P  CTS +HVS K+QHA  Q RP YS     P PE++ T NV  G RD
Sbjct: 1   MASISAAISASLPTVCTSQHHVSKKKQHAHYQARPAYSF----PAPEVVSTINVDGGGRD 60

Query: 61  AFDAPKRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVA 120
           +FD  +RHG      DKL EDTD  NHG+ FTDERWKNGTWDLNMFVKNGKMDWEGVIVA
Sbjct: 61  SFDTAERHGR-----DKLNEDTDAWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVA 120

Query: 121 EAKRRKFLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLV 180
           EAKRRK LE+YPE ATN  PVLFRSSIIPWWAWL+ SYLPQAELLNGRAAM+GFF+AY+V
Sbjct: 121 EAKRRKILEIYPEAATNQHPVLFRSSIIPWWAWLSNSYLPQAELLNGRAAMLGFFVAYVV 180

Query: 181 DALTGIGIVGQSGNFISKSALFVTCL 201
           DALTGIGIV QSGNF+ KSALFVT +
Sbjct: 181 DALTGIGIVWQSGNFLCKSALFVTVI 197

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BLAST of Carg16771 vs. NCBI nr
Match: XP_008453842.1 (PREDICTED: uncharacterized protein LOC103494445 [Cucumis melo])

HSP 1 Score: 266.5 bits (680), Expect = 7.4e-68
Identity = 141/208 (67.79%), Postives = 153/208 (73.56%), Query Frame = 0


Query: 1   MASIAISASFPRSCTSNHVS--NKQQHARQTRPTYSSMTKNPTPELIKTPNVGDRD---- 60
           MASIAISAS PR+   NHVS   KQQHA   +P YSSMTKNPTP++I T +VG+RD    
Sbjct: 1   MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDXXXX 60

Query: 61  -AFDAPKRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIV 120
                                        + FTD+RWKNGTWDLNMFVKNGKMDWEGVIV
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV 120

Query: 121 AEAKRRKFLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYL 180
            EAKRRKFLEL+PE ATN EPVLFRSSIIPWW WLTKSYLPQAELLNGRAAMIGFFM Y 
Sbjct: 121 EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG 180

Query: 181 VDALTGIGIVGQSGNFISKSALFVTCLG 202
           VDALTGIGIVGQSGNFI K+ALF+T +G
Sbjct: 181 VDALTGIGIVGQSGNFICKTALFLTVIG 208

[Close]

BLAST of Carg16771 vs. TAIR10
Match: AT4G17600.1 (Chlorophyll A-B binding family protein)

HSP 1 Score: 169.5 bits (428), Expect = 2.2e-42
Identity = 92/186 (49.46%), Postives = 116/186 (62.37%), Query Frame = 0


Query: 19  VSNKQQHARQTRPTYSSMTKNPTP--ELIKTPNVGDRDAFDAPKRHGNVASATDKLE-ED 78
           V+     +  T PT +   + P P   ++K P      +  A K+     +    +E E+
Sbjct: 37  VTRASSDSGSTSPTAAVSVEAPEPVEVIVKEP----PQSTPAVKKEETATAKNVAVEGEE 96

Query: 79  TDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKFLELYPETATNHEPV 138
                    F D RW NGTWDL  F K+GK DW+ VIVAEAKRRK+LE  PET +N EPV
Sbjct: 97  MKTTESVVKFQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPV 156

Query: 139 LFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALTGIGIVGQSGNFISKSAL 198
           LF +SIIPWWAW+ + +LP+AELLNGRAAMIGFFMAY VD+LTG+G+V Q GNF  K+ L
Sbjct: 157 LFDTSIIPWWAWIKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLL 216

Query: 199 FVTCLG 202
           FV   G
Sbjct: 217 FVAVAG 218

[Close]

BLAST of Carg16771 vs. TAIR10
Match: AT5G47110.1 (Chlorophyll A-B binding family protein)

HSP 1 Score: 162.9 bits (411), Expect = 2.1e-40
Identity = 82/170 (48.24%), Postives = 110/170 (64.71%), Query Frame = 0


Query: 32  TYSSMTKNPTPELIKTPNVGDRDAFDAPKRHGNVASATDKLEEDTDDMNHGQTFTDERWK 91
           T S + + P P  +    V  +   ++     N A   +  +  T+ +     + + +W 
Sbjct: 49  TTSPVVEIPKPASVAVEEVPVKSPAESSSASENGAVGGEATDSSTETV---IKYQNAKWV 108

Query: 92  NGTWDLNMFVKNGKMDWEGVIVAEAKRRKFLELYPETATNHEPVLFRSSIIPWWAWLTKS 151
           NGTWDL  F K+GK DW+ VIV+EAKRRK+LE  PET +N E V+F +SIIPWWAW+ + 
Sbjct: 109 NGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIPWWAWMKRY 168

Query: 152 YLPQAELLNGRAAMIGFFMAYLVDALTGIGIVGQSGNFISKSALFVTCLG 202
           +LP+AELLNGRAAMIGFFMAY VD+LTG+G+V Q GNF  K+ LFV   G
Sbjct: 169 HLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAG 215

[Close]

BLAST of Carg16771 vs. Swiss-Prot
Match: sp|Q9SYX1|LIL31_ARATH (Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.1 PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.0e-41
Identity = 92/186 (49.46%), Postives = 116/186 (62.37%), Query Frame = 0


Query: 19  VSNKQQHARQTRPTYSSMTKNPTP--ELIKTPNVGDRDAFDAPKRHGNVASATDKLE-ED 78
           V+     +  T PT +   + P P   ++K P      +  A K+     +    +E E+
Sbjct: 37  VTRASSDSGSTSPTAAVSVEAPEPVEVIVKEP----PQSTPAVKKEETATAKNVAVEGEE 96

Query: 79  TDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKFLELYPETATNHEPV 138
                    F D RW NGTWDL  F K+GK DW+ VIVAEAKRRK+LE  PET +N EPV
Sbjct: 97  MKTTESVVKFQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPV 156

Query: 139 LFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALTGIGIVGQSGNFISKSAL 198
           LF +SIIPWWAW+ + +LP+AELLNGRAAMIGFFMAY VD+LTG+G+V Q GNF  K+ L
Sbjct: 157 LFDTSIIPWWAWIKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLL 216

Query: 199 FVTCLG 202
           FV   G
Sbjct: 217 FVAVAG 218

[Close]

BLAST of Carg16771 vs. Swiss-Prot
Match: sp|Q6NKS4|LIL32_ARATH (Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.2 PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.8e-39
Identity = 82/170 (48.24%), Postives = 110/170 (64.71%), Query Frame = 0


Query: 32  TYSSMTKNPTPELIKTPNVGDRDAFDAPKRHGNVASATDKLEEDTDDMNHGQTFTDERWK 91
           T S + + P P  +    V  +   ++     N A   +  +  T+ +     + + +W 
Sbjct: 49  TTSPVVEIPKPASVAVEEVPVKSPAESSSASENGAVGGEATDSSTETV---IKYQNAKWV 108

Query: 92  NGTWDLNMFVKNGKMDWEGVIVAEAKRRKFLELYPETATNHEPVLFRSSIIPWWAWLTKS 151
           NGTWDL  F K+GK DW+ VIV+EAKRRK+LE  PET +N E V+F +SIIPWWAW+ + 
Sbjct: 109 NGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIPWWAWMKRY 168

Query: 152 YLPQAELLNGRAAMIGFFMAYLVDALTGIGIVGQSGNFISKSALFVTCLG 202
           +LP+AELLNGRAAMIGFFMAY VD+LTG+G+V Q GNF  K+ LFV   G
Sbjct: 169 HLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAG 215

[Close]

BLAST of Carg16771 vs. TrEMBL
Match: tr|A0A1S3BXB8|A0A1S3BXB8_CUCME (uncharacterized protein LOC103494445 OS=Cucumis melo OX=3656 GN=LOC103494445 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 4.9e-68
Identity = 141/208 (67.79%), Postives = 153/208 (73.56%), Query Frame = 0


Query: 1   MASIAISASFPRSCTSNHVS--NKQQHARQTRPTYSSMTKNPTPELIKTPNVGDRD---- 60
           MASIAISAS PR+   NHVS   KQQHA   +P YSSMTKNPTP++I T +VG+RD    
Sbjct: 1   MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDXXXX 60

Query: 61  -AFDAPKRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIV 120
                                        + FTD+RWKNGTWDLNMFVKNGKMDWEGVIV
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV 120

Query: 121 AEAKRRKFLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYL 180
            EAKRRKFLEL+PE ATN EPVLFRSSIIPWW WLTKSYLPQAELLNGRAAMIGFFM Y 
Sbjct: 121 EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG 180

Query: 181 VDALTGIGIVGQSGNFISKSALFVTCLG 202
           VDALTGIGIVGQSGNFI K+ALF+T +G
Sbjct: 181 VDALTGIGIVGQSGNFICKTALFLTVIG 208

[Close]

BLAST of Carg16771 vs. TrEMBL
Match: tr|A0A0A0KUF5|A0A0A0KUF5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025130 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.1e-63
Identity = 132/205 (64.39%), Postives = 149/205 (72.68%), Query Frame = 0


Query: 1   MASIAISASFPRSCTSNHVS-NKQQHARQTRPTYSSMTKNPTPELIKTPNVGDR---DAF 60
           MASIAISAS PR+  SNHVS  K+Q     +P YSS TKNPTP++I T +V +R      
Sbjct: 1   MASIAISASLPRASNSNHVSMKKKQRVHLAKPGYSSTTKNPTPKVISTLDVVNRXXXXXX 60

Query: 61  DAPKRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEA 120
                                     + FTD+RWKNGTWDLNMFV+NGKMDWEGVIV EA
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEA 120

Query: 121 KRRKFLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDA 180
           KRRKFLE++PE ATN EPV+FRSSIIPWW WLTKSYLPQAELLNGRAAMIGFFM Y VDA
Sbjct: 121 KRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDA 180

Query: 181 LTGIGIVGQSGNFISKSALFVTCLG 202
           LTG+GIVGQSGNFI K+ALF+T +G
Sbjct: 181 LTGVGIVGQSGNFICKTALFLTVIG 205

[Close]

BLAST of Carg16771 vs. TrEMBL
Match: tr|A0A1R3JIV9|A0A1R3JIV9_COCAP (Chlorophyll A-B binding protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_05810 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.9e-56
Identity = 118/206 (57.28%), Postives = 148/206 (71.84%), Query Frame = 0


Query: 1   MASIAISASFPRSCTSNHVSNKQQHARQTRPTYSSMTKNPTPEL---IKTPNVGDRDAFD 60
           MASI+ISAS  R+C+S HV  KQ+     +PTYS  TK     +   ++       D  +
Sbjct: 1   MASISISASLQRACSSQHVRRKQKPI--PKPTYSLGTKQVMKAVTLDMEAQKGYKTDTKE 60

Query: 61  APKRHGNVAS--ATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAE 120
            P    N  S    ++L+ED +  +    F DERWKNGTWDLNMFV+NG+MDW+ VI+AE
Sbjct: 61  EPASEMNYKSKDPEERLKEDFETESSAPKFRDERWKNGTWDLNMFVRNGRMDWDSVIIAE 120

Query: 121 AKRRKFLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVD 180
           A+RRKFLE++PE  TN EPV FRSSIIPWWAWL ++YLP+AELLNGRAAMIGFFMAY+VD
Sbjct: 121 ARRRKFLEMHPEATTNEEPVKFRSSIIPWWAWLMRTYLPEAELLNGRAAMIGFFMAYIVD 180

Query: 181 ALTGIGIVGQSGNFISKSALFVTCLG 202
           ALTG+ +VGQ+GNFI K+ LFVT +G
Sbjct: 181 ALTGLDVVGQTGNFICKAGLFVTVIG 204

[Close]

BLAST of Carg16771 vs. TrEMBL
Match: tr|A0A2P5DCP8|A0A2P5DCP8_PARAD (Chlorophyll A-B binding protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_075080 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.5e-56
Identity = 121/211 (57.35%), Postives = 150/211 (71.09%), Query Frame = 0


Query: 1   MASIAISASFPRSCTSNHVSNKQQHARQTRPTYSSMTKNPTP---------ELIKTPNVG 60
           MAS++ISAS  R+C+SNHV+ KQQ   Q R   S  TK  T          E  K+  V 
Sbjct: 1   MASMSISASLQRACSSNHVTKKQQ--SQPRAARSLGTKQTTSANHVVTLNVENQKSLGVA 60

Query: 61  DRDAFDAPKRHGNVASATDKLEEDTDDMNHGQT-FTDERWKNGTWDLNMFVKNGKMDWEG 120
           ++    +P       +A ++  ED  D  H  + F DERWKNGTWDLNMFV NGKMDW+G
Sbjct: 61  EQVREKSPSNISKPENAENEKSEDGLDSEHSASKFIDERWKNGTWDLNMFVHNGKMDWDG 120

Query: 121 VIVAEAKRRKFLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFM 180
           +IVAEAKRRKFLELYP+ +TN +PV+FRSS+IPWWAWL +SYLP+AELLNGRAAMIGFFM
Sbjct: 121 LIVAEAKRRKFLELYPKASTNEDPVVFRSSVIPWWAWLKRSYLPEAELLNGRAAMIGFFM 180

Query: 181 AYLVDALTGIGIVGQSGNFISKSALFVTCLG 202
           AY+VDALTG+ +VGQ+G+ I K+ +F T LG
Sbjct: 181 AYVVDALTGLDVVGQTGSLICKAGVFATVLG 209

[Close]

BLAST of Carg16771 vs. TrEMBL
Match: tr|A0A0B0N1D6|A0A0B0N1D6_GOSAR (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_31994 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 7.3e-56
Identity = 120/207 (57.97%), Postives = 152/207 (73.43%), Query Frame = 0


Query: 1   MASIAISASFPRSCTSNHVSNKQQHARQTRPTYSSMTKNPTPELIKTPNVGDRDAF---- 60
           MASIAISAS  ++C+S+HV+ K+QHA QT+P YS  TK     +  T +V  +  F    
Sbjct: 231 MASIAISASLQKACSSHHVA-KKQHA-QTKPAYSLGTKQAIDAV--TIDVEGQKGFKIDE 290

Query: 61  -DAPK-RHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVA 120
            D P  +  N     DK     +  +  + F+DERWKNGTWDLNMFV+NG+MDW+ VIVA
Sbjct: 291 KDQPSPQINNSEGLEDKSANKLEIESSARKFSDERWKNGTWDLNMFVRNGRMDWDSVIVA 350

Query: 121 EAKRRKFLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLV 180
           EAKRRK+LE+YPET +N EPV FRSSIIPWWAW  ++YLP+AELLNGRAAMIGFF AY+V
Sbjct: 351 EAKRRKYLEMYPETCSNQEPVQFRSSIIPWWAWFMRTYLPEAELLNGRAAMIGFFSAYVV 410

Query: 181 DALTGIGIVGQSGNFISKSALFVTCLG 202
           D LTG+ ++GQ+GNFI K+ALF+T +G
Sbjct: 411 DGLTGMDLIGQTGNFICKTALFMTVIG 433

The following BLAST results are available for this feature:

BLAST of Carg16771 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023551912.1	2.6e-105	94.53	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita pepo...	[more]
XP_022922577.1	1.7e-104	96.02	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita mosc...	[more]
XP_022984403.1	2.4e-103	94.55	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita maxi...	[more]
XP_022141114.1	4.9e-72	72.82	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Momordica char...	[more]
XP_008453842.1	7.4e-68	67.79	PREDICTED: uncharacterized protein LOC103494445 [Cucumis melo]	[more]

BLAST of Carg16771 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17600.1	2.2e-42	49.46	Chlorophyll A-B binding family protein	[more]
AT5G47110.1	2.1e-40	48.24	Chlorophyll A-B binding family protein	[more]

BLAST of Carg16771 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SYX1\|LIL31_ARATH	4.0e-41	49.46	Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis ...	[more]
sp\|Q6NKS4\|LIL32_ARATH	3.8e-39	48.24	Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis ...	[more]

BLAST of Carg16771 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BXB8\|A0A1S3BXB8_CUCME	4.9e-68	67.79	uncharacterized protein LOC103494445 OS=Cucumis melo OX=3656 GN=LOC103494445 PE=...	[more]
tr\|A0A0A0KUF5\|A0A0A0KUF5_CUCSA	2.1e-63	64.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025130 PE=4 SV=1	[more]
tr\|A0A1R3JIV9\|A0A1R3JIV9_COCAP	1.9e-56	57.28	Chlorophyll A-B binding protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_058...	[more]
tr\|A0A2P5DCP8\|A0A2P5DCP8_PARAD	2.5e-56	57.35	Chlorophyll A-B binding protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_0...	[more]
tr\|A0A0B0N1D6\|A0A0B0N1D6_GOSAR	7.3e-56	57.97	Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_31994 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16771-RA	Carg16771-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 63..201
None	No IPR available	PANTHER	PTHR14154:SF13	SUBFAMILY NOT NAMED	coord: 63..201
None	No IPR available	SUPERFAMILY	SSF103511	Chlorophyll a-b binding protein	coord: 130..189

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16771	Cla010696	Watermelon (97103) v1	carwmB0873
Carg16771	Csa4G025130	Cucumber (Chinese Long) v2	carcuB0886
Carg16771	MELO3C017629	Melon (DHL92) v3.5.1	carmeB0862
Carg16771	ClCG07G017170	Watermelon (Charleston Gray)	carwcgB0848
Carg16771	CSPI04G04280	Wild cucumber (PI 183967)	carcpiB0906
Carg16771	CmoCh16G002500	Cucurbita moschata (Rifu)	carcmoB1175
Carg16771	Lsi07G001350	Bottle gourd (USVL1VR-Ls)	carlsiB792
Carg16771	Cp4.1LG14g05160	Cucurbita pepo (Zucchini)	carcpeB1215
Carg16771	CsGy4G004190	Cucumber (Gy14) v2	carcgybB0860
Carg16771	MELO3C017629.2	Melon (DHL92) v3.6.1	carmedB0872
Carg16771	CsaV3_4G004370	Cucumber (Chinese Long) v3	carcucB0910
Carg16771	Cla97C07G144190	Watermelon (97103) v2	carwmbB0911
Carg16771	Bhi01G001989	Wax gourd	carwgoB1020

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16771	Silver-seed gourd	carcarB406
Carg16771	Cucumber (Gy14) v1	carcgyB0992
Carg16771	Cucurbita maxima (Rimu)	carcmaB1206
Carg16771	Cucurbita maxima (Rimu)	carcmaB1209
Carg16771	Cucurbita moschata (Rifu)	carcmoB1177
Carg16771	Cucurbita pepo (Zucchini)	carcpeB1216
Carg16771	Watermelon (97103) v2	carwmbB0908