CsaV3_4G004360 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G004360
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionglycine-rich cell wall structural protein 2
Locationchr4 : 2737228 .. 2738351 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGTATGTCGTCACAGGTTTAATCTTTATTCAAAAAAAGAATTAATCATGTCATAAGATGAAACCCACCAACACTCCCCCCACTATAAAAGCCACTTTAATGATCACTACACAACACAACTTCTATCCTTCAACCAATTAATAATAATTTCAAATCTCTCTCTTTCTCTCTTAGAATAAAAGAAAACTCACTAAAAATATGAAAGAACCATCTAAATTCCATCTCTCATCTCTCTTCTTTCTTCTCTTTGTACTCACATCTTCCTCCACCGTCAGCTGCGGCGCTACTCCCCGGAAACTTCTCAATTTCCCTGACATGTCTTGGGGTTCACCCAGTGGAGGAGGTGGTGGTGGGAATGGGAACCCCACTGGGGCCTATGGCTCCGGCCATGGTCCTAATTGGGACTACAATTGGGGTTGGGGTTCAAGCCCTGGGAGCGGTTGGGGTTTCGGTTCCGGTTCGGGCCGCTCTCCAACCGGGTTTGGAAAAGGTTATGGATATGGATTTGGGTCGGGATCTGGGTCCGGGTCGGGATATGGGTATGGAAGTGGGAGTGGTGGTGCTCATGGTGGTGGATATGGGTCTGGAAGTGGCTACGGTAACTCCGGCGGTGGCGGTAGTGGTGGCGGATACGGCGGTCCGAGTGGTGATGAGTATCGATCGCCAATGACTACAAGGGACAAGAACAGGCAAGGGTAGAAAAAATGTATGTGAATGAATATATGTTATAAAGTGTAGTGATATATGGTGATAAAAAGGTGAGAATATATATGGTTAGCCCTAGCAAGCTAGCTCGCTTTTAATTATAATATATATGGTTTGTAAGCTTTGTTTAAAGTTTTCCCATATATATGAGACTCAGCCTTATAATCATATATTATAGTGTGTAGTATTATATAACTTTATAATGAGACTAAAATATATTTTCCAATTTTCCATTTCTCATCTTTTCATTTTCTTAATTACTAAAATAAATCATTATTTTGAAAGGAAGATAAATGGATTTGTGTAATTTAGAAGCTATTAATTATGTGAGTAGGGGATGACTTGTGTATTTTAGTATAAAATTTCCCCTCCTTGTGGGGTTAATAATGTAAAGCATAATATAACACATACGGCAACC

mRNA sequence

ATGAAAGAACCATCTAAATTCCATCTCTCATCTCTCTTCTTTCTTCTCTTTGTACTCACATCTTCCTCCACCGTCAGCTGCGGCGCTACTCCCCGGAAACTTCTCAATTTCCCTGACATGTCTTGGGGTTCACCCAGTGGAGGAGGTGGTGGTGGGAATGGGAACCCCACTGGGGCCTATGGCTCCGGCCATGGTCCTAATTGGGACTACAATTGGGGTTGGGGTTCAAGCCCTGGGAGCGGTTGGGGTTTCGGTTCCGGTTCGGGCCGCTCTCCAACCGGGTTTGGAAAAGGTTATGGATATGGATTTGGGTCGGGATCTGGGTCCGGGTCGGGATATGGGTATGGAAGTGGGAGTGGTGGTGCTCATGGTGGTGGATATGGGTCTGGAAGTGGCTACGGTAACTCCGGCGGTGGCGGTAGTGGTGGCGGATACGGCGGTCCGAGTGGTGATGAGTATCGATCGCCAATGACTACAAGGGACAAGAACAGGCAAGGGTAG

Coding sequence (CDS)

ATGAAAGAACCATCTAAATTCCATCTCTCATCTCTCTTCTTTCTTCTCTTTGTACTCACATCTTCCTCCACCGTCAGCTGCGGCGCTACTCCCCGGAAACTTCTCAATTTCCCTGACATGTCTTGGGGTTCACCCAGTGGAGGAGGTGGTGGTGGGAATGGGAACCCCACTGGGGCCTATGGCTCCGGCCATGGTCCTAATTGGGACTACAATTGGGGTTGGGGTTCAAGCCCTGGGAGCGGTTGGGGTTTCGGTTCCGGTTCGGGCCGCTCTCCAACCGGGTTTGGAAAAGGTTATGGATATGGATTTGGGTCGGGATCTGGGTCCGGGTCGGGATATGGGTATGGAAGTGGGAGTGGTGGTGCTCATGGTGGTGGATATGGGTCTGGAAGTGGCTACGGTAACTCCGGCGGTGGCGGTAGTGGTGGCGGATACGGCGGTCCGAGTGGTGATGAGTATCGATCGCCAATGACTACAAGGGACAAGAACAGGCAAGGGTAG

Protein sequence

MKEPSKFHLSSLFFLLFVLTSSSTVSCGATPRKLLNFPDMSWGSPSGGGGGGNGNPTGAYGSGHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKGYGYGFGSGSGSGSGYGYGSGSGGAHGGGYGSGSGYGNSGGGGSGGGYGGPSGDEYRSPMTTRDKNRQG
Homology
[Close]
BLAST of CsaV3_4G004360 vs. NCBI nr
Match: XP_004146895.1 (PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN53182.1 hypothetical protein Csa_4G025120 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 4.0e-16
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 1  MKEPSKFHLSSLFFLLFVLTSSSTVSCGATPRKLLNFPDMSWGSP 46
          MKEPSKFHLSSLFFLLFVLTSSSTVSCGATPRKLLNFPDMSWGSP
Sbjct: 1  MKEPSKFHLSSLFFLLFVLTSSSTVSCGATPRKLLNFPDMSWGSP 45

[Close]
BLAST of CsaV3_4G004360 vs. NCBI nr
Match: XP_016901488.1 (PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 1  MKEPSKFHLSSLFFLLFVLTSSSTVSCGATPRKLLNFPDMSWGSP 46
          MK+PSKFHLSSLFFLLFVLTSSSTVS  ATPRKLLNFPDMSWGSP
Sbjct: 1  MKQPSKFHLSSLFFLLFVLTSSSTVSGAATPRKLLNFPDMSWGSP 45

[Close]
BLAST of CsaV3_4G004360 vs. NCBI nr
Match: XP_022922583.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata])

HSP 1 Score: 57.0 bits (136), Expect = 7.1e-05
Identity = 30/45 (66.67%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 1  MKEPSKFHLSSLFFLLFVLTSSSTVSCGATPRKLLNFPDMSWGSP 46
          MK+PS FHLS LFFLLF +T+SS V      RKLLN PDM WGSP
Sbjct: 1  MKKPSPFHLSPLFFLLFFITASSAVH----GRKLLNSPDMYWGSP 41

[Close]
BLAST of CsaV3_4G004360 vs. NCBI nr
Match: XP_023553046.1 (keratin-associated protein 21-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.0 bits (136), Expect = 7.1e-05
Identity = 30/45 (66.67%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 1  MKEPSKFHLSSLFFLLFVLTSSSTVSCGATPRKLLNFPDMSWGSP 46
          MK+PS FHLS LFFLLF +T+SS V      RKLLN PDM WGSP
Sbjct: 1  MKKPSPFHLSPLFFLLFFITASSAVH----GRKLLNSPDMYWGSP 41

[Close]
BLAST of CsaV3_4G004360 vs. NCBI nr
Match: XP_022984407.1 (glycine-rich cell wall structural protein 2-like [Cucurbita maxima])

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-04
Identity = 30/45 (66.67%), Postives = 32/45 (71.11%), Query Frame = 0 

Query: 1  MKEPSKFHLSSLFFLLFVLTSSSTVSCGATPRKLLNFPDMSWGSP 46
          MK+PS FHLS LFFLLF +T SS V      RKLLN PDM WGSP
Sbjct: 1  MKKPSPFHLSPLFFLLFFITVSSAVH----GRKLLNSPDMYWGSP 41

[Close]
BLAST of CsaV3_4G004360 vs. TrEMBL
Match: tr|A0A0A0KXP2|A0A0A0KXP2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025120 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.7e-16
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 1  MKEPSKFHLSSLFFLLFVLTSSSTVSCGATPRKLLNFPDMSWGSP 46
          MKEPSKFHLSSLFFLLFVLTSSSTVSCGATPRKLLNFPDMSWGSP
Sbjct: 1  MKEPSKFHLSSLFFLLFVLTSSSTVSCGATPRKLLNFPDMSWGSP 45

[Close]
BLAST of CsaV3_4G004360 vs. TrEMBL
Match: tr|A0A1S4DZT0|A0A1S4DZT0_CUCME (glycine-rich cell wall structural protein 2 OS=Cucumis melo OX=3656 GN=LOC103494444 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.2e-14
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 1  MKEPSKFHLSSLFFLLFVLTSSSTVSCGATPRKLLNFPDMSWGSP 46
          MK+PSKFHLSSLFFLLFVLTSSSTVS  ATPRKLLNFPDMSWGSP
Sbjct: 1  MKQPSKFHLSSLFFLLFVLTSSSTVSGAATPRKLLNFPDMSWGSP 45

The following BLAST results are available for this feature:
BLAST of CsaV3_4G004360 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146895.14.0e-16100.00PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN531... [more]
XP_016901488.11.1e-1393.33PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis melo][more]
XP_022922583.17.1e-0566.67glycine-rich cell wall structural protein 2-like [Cucurbita moschata][more]
XP_023553046.17.1e-0566.67keratin-associated protein 21-1-like [Cucurbita pepo subsp. pepo][more]
XP_022984407.11.6e-0466.67glycine-rich cell wall structural protein 2-like [Cucurbita maxima][more]
BLAST of CsaV3_4G004360 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G004360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G004360 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KXP2|A0A0A0KXP2_CUCSA2.7e-16100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025120 PE=4 SV=1[more]
tr|A0A1S4DZT0|A0A1S4DZT0_CUCME7.2e-1493.33glycine-rich cell wall structural protein 2 OS=Cucumis melo OX=3656 GN=LOC103494... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G004360.1CsaV3_4G004360.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..166
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..27
score: 6.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G004360CSPI04G04270Wild cucumber (PI 183967)cpicucB213
CsaV3_4G004360Cucsa.093960Cucumber (Gy14) v1cgycucB102
CsaV3_4G004360CmaCh16G002290Cucurbita maxima (Rimu)cmacucB0387
CsaV3_4G004360Cp4.1LG01g03370Cucurbita pepo (Zucchini)cpecucB0498
CsaV3_4G004360Cla010697Watermelon (97103) v1cucwmB324
CsaV3_4G004360MELO3C017630Melon (DHL92) v3.5.1cucmeB315
CsaV3_4G004360ClCG07G017160Watermelon (Charleston Gray)cucwcgB336
CsaV3_4G004360Lsi07G001340Bottle gourd (USVL1VR-Ls)cuclsiB322
CsaV3_4G004360MELO3C017630.2Melon (DHL92) v3.6.1cucmedB307
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G004360Cucumber (Chinese Long) v3cuccucB173
CsaV3_4G004360Silver-seed gourdcarcucB0405
CsaV3_4G004360Silver-seed gourdcarcucB0749
CsaV3_4G004360Silver-seed gourdcarcucB0910
CsaV3_4G004360Cucumber (Gy14) v2cgybcucB171
CsaV3_4G004360Cucumber (Gy14) v2cgybcucB228
CsaV3_4G004360Cucurbita maxima (Rimu)cmacucB0842
CsaV3_4G004360Cucurbita moschata (Rifu)cmocucB0384
CsaV3_4G004360Cucurbita moschata (Rifu)cmocucB0714
CsaV3_4G004360Cucurbita moschata (Rifu)cmocucB0828
CsaV3_4G004360Cucurbita pepo (Zucchini)cpecucB0262
CsaV3_4G004360Wild cucumber (PI 183967)cpicucB280
CsaV3_4G004360Bottle gourd (USVL1VR-Ls)cuclsiB266
CsaV3_4G004360Watermelon (Charleston Gray)cucwcgB297
CsaV3_4G004360Watermelon (97103) v1cucwmB347
CsaV3_4G004360Watermelon (97103) v2cucwmbB269
CsaV3_4G004360Watermelon (97103) v2cucwmbB324
CsaV3_4G004360Wax gourdcucwgoB381