Cp4.1LG01g03370 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g03370
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 1872327 .. 1872785 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAACCATCAACATTTCATCTCATCTTTCTCCTCTTATTCATCACAGCTTCCTCCGCCGTCAGCCGCCGCGATCATAGCCGGAAACTGCTAAACTTTCCCGGCATGTCTTGGGGACCCAACGGAAATGGAGGTGGGAACCCCACTGGCGGCTATGGCTCTTCCCATGGCCCTAATTGGAACTATAATTGGGGTTGGGGGTCCAGCCCAGGGAGTGGCTGGGGTTACGGCTCGGGTTCGGGCCGATCCTCAAACGGATTCGGAAAAGGTTATGGATATGGATTTGGATCGGGATCGGGATCGGGCTCGGGATGGGGATATGGAAGCGGGGGTGGTGGTGCCCACAGTAGTGGATATGGGTTCGGAAGTGGCTATGGCAACTCTGGAGGCGGCGGGAATGGCGGCGGATACAGCCGTTCGAGCGACAGCGAATATCGTTCCGCCACTAATTCATAG

mRNA sequence

ATGAAAAAACCATCAACATTTCATCTCATCTTTCTCCTCTTATTCATCACAGCTTCCTCCGCCGTCAGCCGCCGCGATCATAGCCGGAAACTGCTAAACTTTCCCGGCATGTCTTGGGGACCCAACGGAAATGGAGGTGGGAACCCCACTGGCGGCTATGGCTCTTCCCATGGCCCTAATTGGAACTATAATTGGGGTTGGGGGTCCAGCCCAGGGAGTGGCTGGGGTTACGGCTCGGGTTCGGGCCGATCCTCAAACGGATTCGGAAAAGGTTATGGATATGGATTTGGATCGGGATCGGGATCGGGCTCGGGATGGGGATATGGAAGCGGGGGTGGTGGTGCCCACAGTAGTGGATATGGGTTCGGAAGTGGCTATGGCAACTCTGGAGGCGGCGGGAATGGCGGCGGATACAGCCGTTCGAGCGACAGCGAATATCGTTCCGCCACTAATTCATAG

Coding sequence (CDS)

ATGAAAAAACCATCAACATTTCATCTCATCTTTCTCCTCTTATTCATCACAGCTTCCTCCGCCGTCAGCCGCCGCGATCATAGCCGGAAACTGCTAAACTTTCCCGGCATGTCTTGGGGACCCAACGGAAATGGAGGTGGGAACCCCACTGGCGGCTATGGCTCTTCCCATGGCCCTAATTGGAACTATAATTGGGGTTGGGGGTCCAGCCCAGGGAGTGGCTGGGGTTACGGCTCGGGTTCGGGCCGATCCTCAAACGGATTCGGAAAAGGTTATGGATATGGATTTGGATCGGGATCGGGATCGGGCTCGGGATGGGGATATGGAAGCGGGGGTGGTGGTGCCCACAGTAGTGGATATGGGTTCGGAAGTGGCTATGGCAACTCTGGAGGCGGCGGGAATGGCGGCGGATACAGCCGTTCGAGCGACAGCGAATATCGTTCCGCCACTAATTCATAG

Protein sequence

MKKPSTFHLIFLLLFITASSAVSRRDHSRKLLNFPGMSWGPNGNGGGNPTGGYGSSHGPNWNYNWGWGSSPGSGWGYGSGSGRSSNGFGKGYGYGFGSGSGSGSGWGYGSGGGGAHSSGYGFGSGYGNSGGGGNGGGYSRSSDSEYRSATNS
BLAST of Cp4.1LG01g03370 vs. TrEMBL
Match: A0A0A0KXP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025120 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.1e-42
Identity = 115/155 (74.19%), Postives = 123/155 (79.35%), Query Frame = 1

Query: 1   MKKPSTFHL---IFLLLFITASSAVSRRDHSRKLLNFPGMSWG-PNGNGGG---NPTGGY 60
           MK+PS FHL    FLL  +T+SS VS     RKLLNFP MSWG P+G GGG   NPTG Y
Sbjct: 1   MKEPSKFHLSSLFFLLFVLTSSSTVSCGATPRKLLNFPDMSWGSPSGGGGGGNGNPTGAY 60

Query: 61  GSSHGPNWNYNWGWGSSPGSGWGYGSGSGRSSNGFGKGYGYGFGSGSGSGSGWGYGSGGG 120
           GS HGPNW+YNWGWGSSPGSGWG+GSGSGRS  GFGKGYGYGFGSGSGSGSG+GYGSG G
Sbjct: 61  GSGHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKGYGYGFGSGSGSGSGYGYGSGSG 120

Query: 121 GAHSSGYGFGSGYGNSGGGGNGGGYSRSSDSEYRS 149
           GAH  GYG GSGYGNSGGGG+GGGY   S  EYRS
Sbjct: 121 GAHGGGYGSGSGYGNSGGGGSGGGYGGPSGDEYRS 155

BLAST of Cp4.1LG01g03370 vs. TrEMBL
Match: U5FQA5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s12340g PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.4e-25
Identity = 88/143 (61.54%), Postives = 100/143 (69.93%), Query Frame = 1

Query: 4   PSTFHL-IFLLLFITASSAVSRRDHS--------RKLLNFPGMSWGPNGNGGGNPTGGYG 63
           P+ FH  +FLL F TA  + +R            RK++  P MS GPNG  G N +G  G
Sbjct: 3   PTLFHFTLFLLSFNTAGGSFARNTGGTSKSAVGDRKVVVSPEMSTGPNGETGSN-SGATG 62

Query: 64  SSHGPNWNYNWGWGSSPGSGWGYGSGSGRSSNGFGKGYGYGFGSGSGSGSGWGYGSGGGG 123
           S HGPNW+YNWGWGSSP  GWGYGSGSGRS NGFG+G+GYG+GSGSGSGSG+GYGSG GG
Sbjct: 63  SEHGPNWDYNWGWGSSPNEGWGYGSGSGRSHNGFGRGFGYGYGSGSGSGSGYGYGSGSGG 122

Query: 124 AHSSGYGFGSGYGNSGGGGNGGG 138
           A   GYG G G GNS GGG GGG
Sbjct: 123 AQGGGYGAGRGSGNSAGGGIGGG 144

BLAST of Cp4.1LG01g03370 vs. TrEMBL
Match: A0A058ZYU9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00118 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.5e-25
Identity = 88/144 (61.11%), Postives = 101/144 (70.14%), Query Frame = 1

Query: 5   STFHLIFLLLFITASSAVSRRDHSRKLLNFPGMSWGPNGNGGGNPTGGYGSSHGPNWNYN 64
           ST    FL+  + A+ A S    S + L+ P MS GP G G G+P G  GS HGPNW+Y+
Sbjct: 5   STMPSQFLIFAVFAAIAFSSPVSSARTLDLPEMSTGPTG-GTGSPDGASGSGHGPNWDYS 64

Query: 65  WGWGSSPGSGWGYGSGSGRSSNGFGKGYGYGFGSGSGSGSGWGYGSGGGGAHSSGYGFGS 124
           WGWGSSPGSGWGYGSGSG S  GFGKG+GYGFGSG+GSGSG+GYGSGGGGAH  G G+ S
Sbjct: 65  WGWGSSPGSGWGYGSGSGHSPTGFGKGFGYGFGSGTGSGSGFGYGSGGGGAHGGGSGYES 124

Query: 125 GYGNSGGGGNGGGYSRSSDSEYRS 149
           G G SGG G GGG   S  S  +S
Sbjct: 125 GSGRSGGAGAGGGSGNSGGSGGKS 147

BLAST of Cp4.1LG01g03370 vs. TrEMBL
Match: B9RA05_RICCO (ATP binding protein, putative OS=Ricinus communis GN=RCOM_1502590 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.4e-23
Identity = 84/136 (61.76%), Postives = 96/136 (70.59%), Query Frame = 1

Query: 10  IFLLLFITASSAVSRRDHSRKLLNFPGMSWGPNGNGGGNPTGGYGSSHGPNWNYNWGWGS 69
           +F L FIT  +         KL+  P MS GPN   G   TG  GS HGPN++Y+WGWGS
Sbjct: 10  LFFLFFITGVTVGGAAVD--KLVASPEMSTGPNNEQGDGSTGATGSGHGPNYDYSWGWGS 69

Query: 70  SPGSGWGYGSGSGRSSNGFGKGYGYGFGSGSGSGSGWGYGSGGGGAHSSGYGFGSGYGNS 129
           SPGSGWGYGSGSGRS NGFG+G+GYGFGSGSGSGSG+GYGSG GGAH  GYG GSG G  
Sbjct: 70  SPGSGWGYGSGSGRSPNGFGRGFGYGFGSGSGSGSGYGYGSGSGGAHGGGYGAGSGSGGR 129

Query: 130 GGGGNGGGYSRSSDSE 146
            GG +GGG    +DS+
Sbjct: 130 AGGESGGGSHSPADSK 143

BLAST of Cp4.1LG01g03370 vs. TrEMBL
Match: A0A061FZ07_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_014817 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-23
Identity = 83/137 (60.58%), Postives = 96/137 (70.07%), Query Frame = 1

Query: 8   HLIFLLLFITASSAVSRRDHSRKLLNFPGMSWGPNGNGGGNPTGGYGSSHGPNWNYNWGW 67
           H    L+F+ ++  ++     RK L    MS  PN   G +  G  GS HGPNW+Y+WGW
Sbjct: 38  HFTVYLIFLLSAFNITGARGDRKKLTASEMSTEPNAPSG-DINGDSGSGHGPNWDYSWGW 97

Query: 68  GSSPGSGWGYGSGSGRSSNGFGKGYGYGFGSGSGSGSGWGYGSGGGGAHSSGYGFGSGYG 127
           GSSPG GWGYGSGSGRS NGFG+GYG+GFGSG+GSGSG+GYGSGG GAH  GYG GSG G
Sbjct: 98  GSSPGGGWGYGSGSGRSPNGFGRGYGFGFGSGTGSGSGYGYGSGGDGAHGGGYGAGSGQG 157

Query: 128 NSGGGGNGGGYSRSSDS 145
           NSGG G GGG   SS S
Sbjct: 158 NSGGSGYGGGSGGSSGS 173

BLAST of Cp4.1LG01g03370 vs. TAIR10
Match: AT5G61660.1 (AT5G61660.1 glycine-rich protein)

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-22
Identity = 77/131 (58.78%), Postives = 90/131 (68.70%), Query Frame = 1

Query: 9   LIFLLLFITASSAVSRRDHSRKLLNFPGMSWGPNGNGGGNPTGGYGSSHGPNWNYNWGWG 68
           L+F  L ITA ++VSR                P     GN  G  GS  GPNW YNWGWG
Sbjct: 7   LVFFFL-ITAKTSVSR----------------PFAWSRGNMPGESGSGRGPNWEYNWGWG 66

Query: 69  SSPGSGWGYGSGSGRSSNGFGKGYGYGFGSGSGSGSGWGYGSGGGGAHSSGYGFGSGYGN 128
           S+PGSGWGYG+GSGRS  G+G+G GYG+GSGSGSG+G+GYGSGGGGA   GYG+GSG G 
Sbjct: 67  SAPGSGWGYGAGSGRSPTGWGRGSGYGYGSGSGSGTGYGYGSGGGGARGGGYGYGSGNGR 120

Query: 129 SGGGGNGGGYS 140
           SGGGG GGG++
Sbjct: 127 SGGGGGGGGFN 120

BLAST of Cp4.1LG01g03370 vs. NCBI nr
Match: gi|659107755|ref|XP_008453841.1| (PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo])

HSP 1 Score: 182.6 bits (462), Expect = 5.3e-43
Identity = 116/158 (73.42%), Postives = 123/158 (77.85%), Query Frame = 1

Query: 1   MKKPSTFHL---IFLLLFITASSAVSRRDHSRKLLNFPGMSWG-PNGNGGGN--PTGGYG 60
           MK+PS FHL    FLL  +T+SS VS     RKLLNFP MSWG PNG GGGN  PTG YG
Sbjct: 1   MKQPSKFHLSSLFFLLFVLTSSSTVSGAATPRKLLNFPDMSWGSPNGGGGGNGNPTGAYG 60

Query: 61  SSHGPNWNYNWGWGSSPGSGWGYGSGSGRSSNGFGKGYGYGFGSGSGSGSGWGYGSGGGG 120
           S H PNW+YNWGWGSSPGSGWG+GSGSGRS  GFGKGYGYGFGSGSGSGSG+GYGSG GG
Sbjct: 61  SGHAPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKGYGYGFGSGSGSGSGYGYGSGSGG 120

Query: 121 AHSSGYGFGSGYGNSGGGGNGGGYSRSSDSEYRSATNS 153
           AH  GYG GSGYGNSGGGG GGGY   S  EYRS T +
Sbjct: 121 AHGGGYGSGSGYGNSGGGGGGGGYGGPSGDEYRSPTTT 158

BLAST of Cp4.1LG01g03370 vs. NCBI nr
Match: gi|449458319|ref|XP_004146895.1| (PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 1.5e-42
Identity = 115/155 (74.19%), Postives = 123/155 (79.35%), Query Frame = 1

Query: 1   MKKPSTFHL---IFLLLFITASSAVSRRDHSRKLLNFPGMSWG-PNGNGGG---NPTGGY 60
           MK+PS FHL    FLL  +T+SS VS     RKLLNFP MSWG P+G GGG   NPTG Y
Sbjct: 1   MKEPSKFHLSSLFFLLFVLTSSSTVSCGATPRKLLNFPDMSWGSPSGGGGGGNGNPTGAY 60

Query: 61  GSSHGPNWNYNWGWGSSPGSGWGYGSGSGRSSNGFGKGYGYGFGSGSGSGSGWGYGSGGG 120
           GS HGPNW+YNWGWGSSPGSGWG+GSGSGRS  GFGKGYGYGFGSGSGSGSG+GYGSG G
Sbjct: 61  GSGHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKGYGYGFGSGSGSGSGYGYGSGSG 120

Query: 121 GAHSSGYGFGSGYGNSGGGGNGGGYSRSSDSEYRS 149
           GAH  GYG GSGYGNSGGGG+GGGY   S  EYRS
Sbjct: 121 GAHGGGYGSGSGYGNSGGGGSGGGYGGPSGDEYRS 155

BLAST of Cp4.1LG01g03370 vs. NCBI nr
Match: gi|743894190|ref|XP_011040339.1| (PREDICTED: glycine-rich cell wall structural protein 2-like isoform X1 [Populus euphratica])

HSP 1 Score: 124.0 bits (310), Expect = 2.2e-25
Identity = 89/143 (62.24%), Postives = 101/143 (70.63%), Query Frame = 1

Query: 4   PSTFHL-IFLLLFITASSAVSRRDHS--------RKLLNFPGMSWGPNGNGGGNPTGGYG 63
           P+ FH  +FLL F TA  + +R            RK++  P MS GPNG  G + TG  G
Sbjct: 3   PTLFHFTLFLLSFNTAGGSFARNTGGTSKSAVGDRKVVVSPEMSTGPNGETGSS-TGASG 62

Query: 64  SSHGPNWNYNWGWGSSPGSGWGYGSGSGRSSNGFGKGYGYGFGSGSGSGSGWGYGSGGGG 123
           S HGPNW++NWGWGSSP  GWGYGSGSGRS NGFG+G+GYGFGSGSGSGSG+GYGSG GG
Sbjct: 63  SEHGPNWDFNWGWGSSPHEGWGYGSGSGRSHNGFGRGFGYGFGSGSGSGSGYGYGSGSGG 122

Query: 124 AHSSGYGFGSGYGNSGGGGNGGG 138
           A   GYG GSG GNS GGG GGG
Sbjct: 123 AQGGGYGAGSGPGNSAGGGRGGG 144

BLAST of Cp4.1LG01g03370 vs. NCBI nr
Match: gi|743894192|ref|XP_011040340.1| (PREDICTED: glycine-rich cell wall structural protein 2-like isoform X2 [Populus euphratica])

HSP 1 Score: 124.0 bits (310), Expect = 2.2e-25
Identity = 89/143 (62.24%), Postives = 101/143 (70.63%), Query Frame = 1

Query: 4   PSTFHL-IFLLLFITASSAVSRRDHS--------RKLLNFPGMSWGPNGNGGGNPTGGYG 63
           P+ FH  +FLL F TA  + +R            RK++  P MS GPNG  G + TG  G
Sbjct: 3   PTLFHFTLFLLSFNTAGGSFARNTGGTSKSAVGDRKVVVSPEMSTGPNGETGSS-TGASG 62

Query: 64  SSHGPNWNYNWGWGSSPGSGWGYGSGSGRSSNGFGKGYGYGFGSGSGSGSGWGYGSGGGG 123
           S HGPNW++NWGWGSSP  GWGYGSGSGRS NGFG+G+GYGFGSGSGSGSG+GYGSG GG
Sbjct: 63  SEHGPNWDFNWGWGSSPHEGWGYGSGSGRSHNGFGRGFGYGFGSGSGSGSGYGYGSGSGG 122

Query: 124 AHSSGYGFGSGYGNSGGGGNGGG 138
           A   GYG GSG GNS GGG GGG
Sbjct: 123 AQGGGYGAGSGPGNSAGGGRGGG 144

BLAST of Cp4.1LG01g03370 vs. NCBI nr
Match: gi|566207226|ref|XP_006374592.1| (hypothetical protein POPTR_0015s12340g [Populus trichocarpa])

HSP 1 Score: 122.9 bits (307), Expect = 4.9e-25
Identity = 88/143 (61.54%), Postives = 100/143 (69.93%), Query Frame = 1

Query: 4   PSTFHL-IFLLLFITASSAVSRRDHS--------RKLLNFPGMSWGPNGNGGGNPTGGYG 63
           P+ FH  +FLL F TA  + +R            RK++  P MS GPNG  G N +G  G
Sbjct: 3   PTLFHFTLFLLSFNTAGGSFARNTGGTSKSAVGDRKVVVSPEMSTGPNGETGSN-SGATG 62

Query: 64  SSHGPNWNYNWGWGSSPGSGWGYGSGSGRSSNGFGKGYGYGFGSGSGSGSGWGYGSGGGG 123
           S HGPNW+YNWGWGSSP  GWGYGSGSGRS NGFG+G+GYG+GSGSGSGSG+GYGSG GG
Sbjct: 63  SEHGPNWDYNWGWGSSPNEGWGYGSGSGRSHNGFGRGFGYGYGSGSGSGSGYGYGSGSGG 122

Query: 124 AHSSGYGFGSGYGNSGGGGNGGG 138
           A   GYG G G GNS GGG GGG
Sbjct: 123 AQGGGYGAGRGSGNSAGGGIGGG 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KXP2_CUCSA1.1e-4274.19Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025120 PE=4 SV=1[more]
U5FQA5_POPTR3.4e-2561.54Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s12340g PE=4 SV=1[more]
A0A058ZYU9_EUCGR4.5e-2561.11Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00118 PE=4 SV=1[more]
B9RA05_RICCO1.4e-2361.76ATP binding protein, putative OS=Ricinus communis GN=RCOM_1502590 PE=4 SV=1[more]
A0A061FZ07_THECC1.9e-2360.58Uncharacterized protein OS=Theobroma cacao GN=TCM_014817 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G61660.11.9e-2258.78 glycine-rich protein[more]
Match NameE-valueIdentityDescription
gi|659107755|ref|XP_008453841.1|5.3e-4373.42PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo][more]
gi|449458319|ref|XP_004146895.1|1.5e-4274.19PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis sativus][more]
gi|743894190|ref|XP_011040339.1|2.2e-2562.24PREDICTED: glycine-rich cell wall structural protein 2-like isoform X1 [Populus ... [more]
gi|743894192|ref|XP_011040340.1|2.2e-2562.24PREDICTED: glycine-rich cell wall structural protein 2-like isoform X2 [Populus ... [more]
gi|566207226|ref|XP_006374592.1|4.9e-2561.54hypothetical protein POPTR_0015s12340g [Populus trichocarpa][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g03370.1Cp4.1LG01g03370.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g03370CsaV3_4G004360Cucumber (Chinese Long) v3cpecucB0498
The following gene(s) are paralogous to this gene:

None