CsaV3_4G001200 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G001200
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRING/U-box superfamily protein
Locationchr4 : 691318 .. 692276 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTTGAAATTTCTTCTCCAATTCCATATCTTCTCAACGCTAATGGTTTCGGCAATGGAGTATTGGAAGTTCAGTTAAGTTATCTGGAACGTGCAATTTCCGTTTCTTCATTCTCCCAACGAATCCTCTACGAAACTCAACCCACTCCATTCAACAATGCACTCTTCTATCTCTCTGTGCACCAACTTCAACATCCCTTGTTCCACATTCGGCAATTTCTCTACTCACTCAACATTCGAAGGGAAACCATAGCTCGGCAAATCGCTTCCTTCGTCGCCCACATGTGTAACGGGAACACGGGGTGGAATTCGAATTTCTATGTCATCGCTAGAGTGGATTTGGTCCGAGTGATCCGGATAGAAGAACAACCAAGGGCGGAAGGATGGAGAGGAGTGGCGGTGGAGAGGTTGAGTAAGTTGAAATCGGAGGAGGAAAAGGGAGATTGCAGTGTGTGTTTGGATGAATTGGATTGTGAAAAGAGGGAGGTTATAAGGATTCCTTGCGGCCATGTTTACCATGAATCGTGCATCTTCAAGTGGCTTAACAGCAGTAACTCTTGCCCTTTGTGTAGAAGCTCATTCCCACTACACAACGTCACAAACTGAATTTTCCTTTTGCTTTTTGGATTTTGGGATTGTAATTCAATTACTCATTAATCACAATTTTAGTTATTAATGCTAATATTACACCATATCTTTTCTTAGTTTATTGGATCCATTGAGCAAAACAATATGGGTTAAGGCCCATTAAATGTGGGCAGTCTTAAGGTCAAGCTTCAATGAACCACTTGTGTTAAAAGAGTTAGTTAGTATAATTCATGGCTGTTTTTCGAGTTAAAGGTGATTTCTCTCTTTATTCTTCTTCATCTTTGACAGTTTTGATTCCGGCGATGAGAGTGATTGCAAGAGAAAACCGAACTACACATAGAAGAAACAGAAGGTTGAATCAATGTTGA

mRNA sequence

ATGTCTTTTGAAATTTCTTCTCCAATTCCATATCTTCTCAACGCTAATGGTTTCGGCAATGGAGTATTGGAAGTTCAGTTAAGTTATCTGGAACGTGCAATTTCCGTTTCTTCATTCTCCCAACGAATCCTCTACGAAACTCAACCCACTCCATTCAACAATGCACTCTTCTATCTCTCTGTGCACCAACTTCAACATCCCTTGTTCCACATTCGGCAATTTCTCTACTCACTCAACATTCGAAGGGAAACCATAGCTCGGCAAATCGCTTCCTTCGTCGCCCACATGTGTAACGGGAACACGGGGTGGAATTCGAATTTCTATGTCATCGCTAGAGTGGATTTGGTCCGAGTGATCCGGATAGAAGAACAACCAAGGGCGGAAGGATGGAGAGGAGTGGCGGTGGAGAGGTTGAGTAAGTTGAAATCGGAGGAGGAAAAGGGAGATTGCAGTGTGTGTTTGGATGAATTGGATTGTGAAAAGAGGGAGGTTATAAGGATTCCTTGCGGCCATGTTTACCATGAATCGTGCATCTTCAAGTGGCTTAACAGCATTTTGATTCCGGCGATGAGAGTGATTGCAAGAGAAAACCGAACTACACATAGAAGAAACAGAAGGTTGAATCAATGTTGA

Coding sequence (CDS)

ATGTCTTTTGAAATTTCTTCTCCAATTCCATATCTTCTCAACGCTAATGGTTTCGGCAATGGAGTATTGGAAGTTCAGTTAAGTTATCTGGAACGTGCAATTTCCGTTTCTTCATTCTCCCAACGAATCCTCTACGAAACTCAACCCACTCCATTCAACAATGCACTCTTCTATCTCTCTGTGCACCAACTTCAACATCCCTTGTTCCACATTCGGCAATTTCTCTACTCACTCAACATTCGAAGGGAAACCATAGCTCGGCAAATCGCTTCCTTCGTCGCCCACATGTGTAACGGGAACACGGGGTGGAATTCGAATTTCTATGTCATCGCTAGAGTGGATTTGGTCCGAGTGATCCGGATAGAAGAACAACCAAGGGCGGAAGGATGGAGAGGAGTGGCGGTGGAGAGGTTGAGTAAGTTGAAATCGGAGGAGGAAAAGGGAGATTGCAGTGTGTGTTTGGATGAATTGGATTGTGAAAAGAGGGAGGTTATAAGGATTCCTTGCGGCCATGTTTACCATGAATCGTGCATCTTCAAGTGGCTTAACAGCATTTTGATTCCGGCGATGAGAGTGATTGCAAGAGAAAACCGAACTACACATAGAAGAAACAGAAGGTTGAATCAATGTTGA

Protein sequence

MSFEISSPIPYLLNANGFGNGVLEVQLSYLERAISVSSFSQRILYETQPTPFNNALFYLSVHQLQHPLFHIRQFLYSLNIRRETIARQIASFVAHMCNGNTGWNSNFYVIARVDLVRVIRIEEQPRAEGWRGVAVERLSKLKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFKWLNSILIPAMRVIARENRTTHRRNRRLNQC
Homology
[Close]
BLAST of CsaV3_4G001200 vs. NCBI nr
Match: XP_011654314.1 (PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus] >KGN52851.1 hypothetical protein Csa_4G003650 [Cucumis sativus])

HSP 1 Score: 378.3 bits (970), Expect = 1.8e-101
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 

Query: 1   MSFEISSPIPYLLNANGFGNGVLEVQLSYLERAISVSSFSQRILYETQPTPFNNALFYLS 60
           MSFEISSPIPYLLNANGFGNGVLEVQLSYLERAISVSSFSQRILYETQPTPFNNALFYLS
Sbjct: 1   MSFEISSPIPYLLNANGFGNGVLEVQLSYLERAISVSSFSQRILYETQPTPFNNALFYLS 60

Query: 61  VHQLQHPLFHIRQFLYSLNIRRETIARQIASFVAHMCNGNTGWNSNFYVIARVDLVRVIR 120
           VHQLQHPLFHIRQFLYSLNIRRETIARQIASFVAHMCNGNTGWNSNFYVIARVDLVRVIR
Sbjct: 61  VHQLQHPLFHIRQFLYSLNIRRETIARQIASFVAHMCNGNTGWNSNFYVIARVDLVRVIR 120

Query: 121 IEEQPRAEGWRGVAVERLSKLKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFK 180
           IEEQPRAEGWRGVAVERLSKLKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFK
Sbjct: 121 IEEQPRAEGWRGVAVERLSKLKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFK 180

Query: 181 WLNS 185
           WLNS
Sbjct: 181 WLNS 184

[Close]
BLAST of CsaV3_4G001200 vs. NCBI nr
Match: XP_016901482.1 (PREDICTED: uncharacterized protein LOC107991269 [Cucumis melo])

HSP 1 Score: 296.6 bits (758), Expect = 6.7e-77
Identity = 155/206 (75.24%), Postives = 165/206 (80.10%), Query Frame = 0 

Query: 1   MSFEISSPIPYLLNANGFGNGVLEVQLSYLERAISVSSFSQRILYETQPTPFNNALFYLS 60
           MSF ISSPI YLLN  GFGNGVLE+QLSY+ER IS+SS SQRILYETQP PFNNA FYLS
Sbjct: 1   MSFAISSPIQYLLNGTGFGNGVLEIQLSYVERVISISSVSQRILYETQPIPFNNAHFYLS 60

Query: 61  VHQLQHPLFHIRQFLYSLNIRRETIARQIASFVAHMCNGNTGWNSNFYVIARVDLVRVIR 120
           VH LQ PLF+IRQFL+SLNIRRE IARQIAS+VAHMCNGNTG NSNFYVIARVDLVR IR
Sbjct: 61  VHHLQDPLFYIRQFLFSLNIRRENIARQIASYVAHMCNGNTGRNSNFYVIARVDLVRAIR 120

Query: 121 IEEQ---------------------PRAEGWRGVAV-ERLSKLKSEEEKGDCSVCLDELD 180
           IEE+                     PRA   RGV V ERL KLKSEEE+GDCSVCLDELD
Sbjct: 121 IEEESMWRDGGGVVVEAETVVFDEVPRAR--RGVVVGERLRKLKSEEEEGDCSVCLDELD 180

Query: 181 CEKREVIRIPCGHVYHESCIFKWLNS 185
           C KREVIRIPCGHVYHESCIF+WLN+
Sbjct: 181 CGKREVIRIPCGHVYHESCIFEWLNN 204

[Close]
BLAST of CsaV3_4G001200 vs. NCBI nr
Match: XP_016899530.1 (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis melo])

HSP 1 Score: 184.1 bits (466), Expect = 4.9e-43
Identity = 109/210 (51.90%), Postives = 139/210 (66.19%), Query Frame = 0 

Query: 1   MSFEISSPIPYLLNANGF-GNGVLEVQLSYLERAISVSSFSQR---ILYETQPTPFNNAL 60
           MSF IS+PI Y L  +G  GNG+LEV++S+ E+ IS+S  + R   IL++T   P++NAL
Sbjct: 1   MSFAISNPIQYRLYGSGTGGNGILEVRISFFEQMISLSPVTGRPHQILHQTPRIPYHNAL 60

Query: 61  FYLSVHQLQHPLFHIRQFLYSLNIR---RETIARQIASFVAHMCNGNTGWNSNFYVIARV 120
            YL++ QLQ PLF+I QFL SLNIR    +++ARQIAS +  M + N   + NF++IA V
Sbjct: 61  VYLTLRQLQSPLFYITQFLSSLNIRPAASQSMARQIASHILQMPDRN--GDRNFHIIAEV 120

Query: 121 DLVRVI--RIEEQPRAEG--------------WRGVAVERLSKLKSE---EEKGDCSVCL 180
           D +RVI   +EEQ    G               RGV   R  +LKSE   E+ GDCS+CL
Sbjct: 121 DFIRVIWLELEEQSMGAGAEETVVFDEAPPALKRGVGKARGERLKSEEKVEDLGDCSICL 180

Query: 181 DELDCEKREVIRIPCGHVYHESCIFKWLNS 185
           DEL CEKREVIRIPCGHVYHESCIFKWL +
Sbjct: 181 DELSCEKREVIRIPCGHVYHESCIFKWLKN 208

[Close]
BLAST of CsaV3_4G001200 vs. NCBI nr
Match: XP_004144954.1 (PREDICTED: uncharacterized protein LOC101214496 [Cucumis sativus] >KGN43349.1 hypothetical protein Csa_7G025210 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 1.9e-42
Identity = 106/210 (50.48%), Postives = 141/210 (67.14%), Query Frame = 0 

Query: 1   MSFEISSPIPYLLNANGF-GNGVLEVQLSYLERAISVSSFSQR---ILYETQPTPFNNAL 60
           MSF IS+PI Y L A+G  GNGVL+V +S++++ ISVS  + R   +L++T   P++NAL
Sbjct: 1   MSFAISNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60

Query: 61  FYLSVHQLQHPLFHIRQFLYSLNIR---RETIARQIASFVAHMCNGNTGWNSNFYVIARV 120
           FYLS+ QLQ PLF+I Q L SLNIR    + +AR+IAS +  M + N+   +NF+++A V
Sbjct: 61  FYLSLRQLQSPLFYITQILSSLNIRPAASQNMARRIASHILQMPDRNS--ETNFHILAEV 120

Query: 121 DLVRVI----------------RIEEQPRAEGWRGVAVERLSKLKSE---EEKGDCSVCL 180
           D +R+I                 ++E P A   RGV V R  +L+SE   EE GDCS+CL
Sbjct: 121 DFIRLIWLPSMGGGGAGAEETVVLDEAPPAVK-RGVGVARGERLRSEEKMEELGDCSICL 180

Query: 181 DELDCEKREVIRIPCGHVYHESCIFKWLNS 185
           DEL CEKREV+RIPCGHVYHESCIFKWL +
Sbjct: 181 DELSCEKREVMRIPCGHVYHESCIFKWLEN 207

[Close]
BLAST of CsaV3_4G001200 vs. NCBI nr
Match: XP_011659694.1 (PREDICTED: uncharacterized protein LOC105436225 [Cucumis sativus] >KGN43356.1 hypothetical protein Csa_7G026750 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 1.9e-42
Identity = 106/210 (50.48%), Postives = 141/210 (67.14%), Query Frame = 0 

Query: 1   MSFEISSPIPYLLNANGF-GNGVLEVQLSYLERAISVSSFSQR---ILYETQPTPFNNAL 60
           MSF IS+PI Y L A+G  GNGVL+V +S++++ ISVS  + R   +L++T   P++NAL
Sbjct: 1   MSFAISNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60

Query: 61  FYLSVHQLQHPLFHIRQFLYSLNIR---RETIARQIASFVAHMCNGNTGWNSNFYVIARV 120
           FYLS+ QLQ PLF+I Q L SLNIR    + +AR+IAS +  M + N+   +NF+++A V
Sbjct: 61  FYLSLRQLQSPLFYITQILSSLNIRPAASQNMARRIASHILQMPDRNS--ETNFHILAEV 120

Query: 121 DLVRVI----------------RIEEQPRAEGWRGVAVERLSKLKSE---EEKGDCSVCL 180
           D +R+I                 ++E P A   RGV V R  +L+SE   EE GDCS+CL
Sbjct: 121 DFIRLIWLPSMGGGGAGAEETVVLDEAPPAVK-RGVGVARGERLRSEEKMEELGDCSICL 180

Query: 181 DELDCEKREVIRIPCGHVYHESCIFKWLNS 185
           DEL CEKREV+RIPCGHVYHESCIFKWL +
Sbjct: 181 DELSCEKREVMRIPCGHVYHESCIFKWLEN 207

[Close]
BLAST of CsaV3_4G001200 vs. TAIR10
Match: AT5G37220.1 (RING/U-box superfamily protein)

HSP 1 Score: 45.8 bits (107), Expect = 3.8e-05
Identity = 20/55 (36.36%), Postives = 34/55 (61.82%), Query Frame = 0 

Query: 131 RGVAVERLSKLKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFKWLNSI 186
           R V  +++  +  EEEK  CS+C++ L+ E      I C H++H+SCIF+  +S+
Sbjct: 141 RLVEEQKVESIDLEEEKKTCSICMENLNSESSSENIISCLHLFHQSCIFESESSV 195

[Close]
BLAST of CsaV3_4G001200 vs. TAIR10
Match: AT3G58720.2 (RING/U-box superfamily protein)

HSP 1 Score: 45.4 bits (106), Expect = 4.9e-05
Identity = 19/44 (43.18%), Postives = 27/44 (61.36%), Query Frame = 0 

Query: 141 LKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFKWLNS 185
           L  EE+   CSVCL++ +  K  V+  PC H++HE CI  WL +
Sbjct: 163 LSGEEDDKRCSVCLEDFE-PKETVMLTPCKHMFHEECIVPWLKT 205

[Close]
BLAST of CsaV3_4G001200 vs. TAIR10
Match: AT3G13430.1 (RING/U-box superfamily protein)

HSP 1 Score: 44.3 bits (103), Expect = 1.1e-04
Identity = 20/49 (40.82%), Postives = 28/49 (57.14%), Query Frame = 0 

Query: 134 AVERLSKLKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFKWL 183
           AVE L+ +K E+    CSVCLD+ +    E   +PC H +H  C+  WL
Sbjct: 209 AVEALAMVKIEDSLLQCSVCLDDFEI-GMEAKEMPCKHKFHSDCLLPWL 256

[Close]
BLAST of CsaV3_4G001200 vs. TAIR10
Match: AT1G57730.1 (RING/U-box superfamily protein)

HSP 1 Score: 42.7 bits (99), Expect = 3.2e-04
Identity = 20/60 (33.33%), Postives = 33/60 (55.00%), Query Frame = 0 

Query: 139 SKLKSEEEKGDCSVCLDELDCEKREVIRIP-CGHVYHESCIFKWL-NSILIPAMRVIARE 197
           S   S  E   C++CL+++  +  +   +P C HV+H  CI+KWL +S L P  R +  +
Sbjct: 105 STSSSPLENKTCAICLEDMSQDVHDYQEMPNCPHVFHNDCIYKWLGHSNLCPLCRTVLED 164

[Close]
BLAST of CsaV3_4G001200 vs. TAIR10
Match: AT5G41430.1 (RING/U-box superfamily protein)

HSP 1 Score: 42.7 bits (99), Expect = 3.2e-04
Identity = 25/58 (43.10%), Postives = 36/58 (62.07%), Query Frame = 0 

Query: 129 GWRGVAVERLSKLKSEEEKGD---CSVCLDELDCEKREVIRI-PCGHVYHESCIFKWL 183
           G+R  ++E +     E+E  D   CS+CL+EL+ +  E+IRI  C HV+H SCI  WL
Sbjct: 94  GYR-ASIEEMEFKDIEKEGFDEIGCSICLEELE-DGHEIIRIKKCRHVFHRSCIDSWL 149

[Close]
BLAST of CsaV3_4G001200 vs. TrEMBL
Match: tr|A0A0A0KYC0|A0A0A0KYC0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G003650 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 1.2e-101
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 

Query: 1   MSFEISSPIPYLLNANGFGNGVLEVQLSYLERAISVSSFSQRILYETQPTPFNNALFYLS 60
           MSFEISSPIPYLLNANGFGNGVLEVQLSYLERAISVSSFSQRILYETQPTPFNNALFYLS
Sbjct: 1   MSFEISSPIPYLLNANGFGNGVLEVQLSYLERAISVSSFSQRILYETQPTPFNNALFYLS 60

Query: 61  VHQLQHPLFHIRQFLYSLNIRRETIARQIASFVAHMCNGNTGWNSNFYVIARVDLVRVIR 120
           VHQLQHPLFHIRQFLYSLNIRRETIARQIASFVAHMCNGNTGWNSNFYVIARVDLVRVIR
Sbjct: 61  VHQLQHPLFHIRQFLYSLNIRRETIARQIASFVAHMCNGNTGWNSNFYVIARVDLVRVIR 120

Query: 121 IEEQPRAEGWRGVAVERLSKLKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFK 180
           IEEQPRAEGWRGVAVERLSKLKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFK
Sbjct: 121 IEEQPRAEGWRGVAVERLSKLKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFK 180

Query: 181 WLNS 185
           WLNS
Sbjct: 181 WLNS 184

[Close]
BLAST of CsaV3_4G001200 vs. TrEMBL
Match: tr|A0A1S4DZR1|A0A1S4DZR1_CUCME (uncharacterized protein LOC107991269 OS=Cucumis melo OX=3656 GN=LOC107991269 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 4.5e-77
Identity = 155/206 (75.24%), Postives = 165/206 (80.10%), Query Frame = 0 

Query: 1   MSFEISSPIPYLLNANGFGNGVLEVQLSYLERAISVSSFSQRILYETQPTPFNNALFYLS 60
           MSF ISSPI YLLN  GFGNGVLE+QLSY+ER IS+SS SQRILYETQP PFNNA FYLS
Sbjct: 1   MSFAISSPIQYLLNGTGFGNGVLEIQLSYVERVISISSVSQRILYETQPIPFNNAHFYLS 60

Query: 61  VHQLQHPLFHIRQFLYSLNIRRETIARQIASFVAHMCNGNTGWNSNFYVIARVDLVRVIR 120
           VH LQ PLF+IRQFL+SLNIRRE IARQIAS+VAHMCNGNTG NSNFYVIARVDLVR IR
Sbjct: 61  VHHLQDPLFYIRQFLFSLNIRRENIARQIASYVAHMCNGNTGRNSNFYVIARVDLVRAIR 120

Query: 121 IEEQ---------------------PRAEGWRGVAV-ERLSKLKSEEEKGDCSVCLDELD 180
           IEE+                     PRA   RGV V ERL KLKSEEE+GDCSVCLDELD
Sbjct: 121 IEEESMWRDGGGVVVEAETVVFDEVPRAR--RGVVVGERLRKLKSEEEEGDCSVCLDELD 180

Query: 181 CEKREVIRIPCGHVYHESCIFKWLNS 185
           C KREVIRIPCGHVYHESCIF+WLN+
Sbjct: 181 CGKREVIRIPCGHVYHESCIFEWLNN 204

[Close]
BLAST of CsaV3_4G001200 vs. TrEMBL
Match: tr|A0A1S4DUZ4|A0A1S4DUZ4_CUCME (E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.2e-43
Identity = 109/210 (51.90%), Postives = 139/210 (66.19%), Query Frame = 0 

Query: 1   MSFEISSPIPYLLNANGF-GNGVLEVQLSYLERAISVSSFSQR---ILYETQPTPFNNAL 60
           MSF IS+PI Y L  +G  GNG+LEV++S+ E+ IS+S  + R   IL++T   P++NAL
Sbjct: 1   MSFAISNPIQYRLYGSGTGGNGILEVRISFFEQMISLSPVTGRPHQILHQTPRIPYHNAL 60

Query: 61  FYLSVHQLQHPLFHIRQFLYSLNIR---RETIARQIASFVAHMCNGNTGWNSNFYVIARV 120
            YL++ QLQ PLF+I QFL SLNIR    +++ARQIAS +  M + N   + NF++IA V
Sbjct: 61  VYLTLRQLQSPLFYITQFLSSLNIRPAASQSMARQIASHILQMPDRN--GDRNFHIIAEV 120

Query: 121 DLVRVI--RIEEQPRAEG--------------WRGVAVERLSKLKSE---EEKGDCSVCL 180
           D +RVI   +EEQ    G               RGV   R  +LKSE   E+ GDCS+CL
Sbjct: 121 DFIRVIWLELEEQSMGAGAEETVVFDEAPPALKRGVGKARGERLKSEEKVEDLGDCSICL 180

Query: 181 DELDCEKREVIRIPCGHVYHESCIFKWLNS 185
           DEL CEKREVIRIPCGHVYHESCIFKWL +
Sbjct: 181 DELSCEKREVIRIPCGHVYHESCIFKWLKN 208

[Close]
BLAST of CsaV3_4G001200 vs. TrEMBL
Match: tr|A0A0A0K696|A0A0A0K696_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42
Identity = 106/210 (50.48%), Postives = 141/210 (67.14%), Query Frame = 0 

Query: 1   MSFEISSPIPYLLNANGF-GNGVLEVQLSYLERAISVSSFSQR---ILYETQPTPFNNAL 60
           MSF IS+PI Y L A+G  GNGVL+V +S++++ ISVS  + R   +L++T   P++NAL
Sbjct: 1   MSFAISNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60

Query: 61  FYLSVHQLQHPLFHIRQFLYSLNIR---RETIARQIASFVAHMCNGNTGWNSNFYVIARV 120
           FYLS+ QLQ PLF+I Q L SLNIR    + +AR+IAS +  M + N+   +NF+++A V
Sbjct: 61  FYLSLRQLQSPLFYITQILSSLNIRPAASQNMARRIASHILQMPDRNS--ETNFHILAEV 120

Query: 121 DLVRVI----------------RIEEQPRAEGWRGVAVERLSKLKSE---EEKGDCSVCL 180
           D +R+I                 ++E P A   RGV V R  +L+SE   EE GDCS+CL
Sbjct: 121 DFIRLIWLPSMGGGGAGAEETVVLDEAPPAVK-RGVGVARGERLRSEEKMEELGDCSICL 180

Query: 181 DELDCEKREVIRIPCGHVYHESCIFKWLNS 185
           DEL CEKREV+RIPCGHVYHESCIFKWL +
Sbjct: 181 DELSCEKREVMRIPCGHVYHESCIFKWLEN 207

[Close]
BLAST of CsaV3_4G001200 vs. TrEMBL
Match: tr|A0A0A0K2W2|A0A0A0K2W2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G025210 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42
Identity = 106/210 (50.48%), Postives = 141/210 (67.14%), Query Frame = 0 

Query: 1   MSFEISSPIPYLLNANGF-GNGVLEVQLSYLERAISVSSFSQR---ILYETQPTPFNNAL 60
           MSF IS+PI Y L A+G  GNGVL+V +S++++ ISVS  + R   +L++T   P++NAL
Sbjct: 1   MSFAISNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60

Query: 61  FYLSVHQLQHPLFHIRQFLYSLNIR---RETIARQIASFVAHMCNGNTGWNSNFYVIARV 120
           FYLS+ QLQ PLF+I Q L SLNIR    + +AR+IAS +  M + N+   +NF+++A V
Sbjct: 61  FYLSLRQLQSPLFYITQILSSLNIRPAASQNMARRIASHILQMPDRNS--ETNFHILAEV 120

Query: 121 DLVRVI----------------RIEEQPRAEGWRGVAVERLSKLKSE---EEKGDCSVCL 180
           D +R+I                 ++E P A   RGV V R  +L+SE   EE GDCS+CL
Sbjct: 121 DFIRLIWLPSMGGGGAGAEETVVLDEAPPAVK-RGVGVARGERLRSEEKMEELGDCSICL 180

Query: 181 DELDCEKREVIRIPCGHVYHESCIFKWLNS 185
           DEL CEKREV+RIPCGHVYHESCIFKWL +
Sbjct: 181 DELSCEKREVMRIPCGHVYHESCIFKWLEN 207

The following BLAST results are available for this feature:
BLAST of CsaV3_4G001200 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011654314.11.8e-101100.00PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus] >KGN52851.1... [more]
XP_016901482.16.7e-7775.24PREDICTED: uncharacterized protein LOC107991269 [Cucumis melo][more]
XP_016899530.14.9e-4351.90PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis melo][more]
XP_004144954.11.9e-4250.48PREDICTED: uncharacterized protein LOC101214496 [Cucumis sativus] >KGN43349.1 hy... [more]
XP_011659694.11.9e-4250.48PREDICTED: uncharacterized protein LOC105436225 [Cucumis sativus] >KGN43356.1 hy... [more]
BLAST of CsaV3_4G001200 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G37220.13.8e-0536.36RING/U-box superfamily protein[more]
AT3G58720.24.9e-0543.18RING/U-box superfamily protein[more]
AT3G13430.11.1e-0440.82RING/U-box superfamily protein[more]
AT1G57730.13.2e-0433.33RING/U-box superfamily protein[more]
AT5G41430.13.2e-0443.10RING/U-box superfamily protein[more]
BLAST of CsaV3_4G001200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G001200 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KYC0|A0A0A0KYC0_CUCSA1.2e-101100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G003650 PE=4 SV=1[more]
tr|A0A1S4DZR1|A0A1S4DZR1_CUCME4.5e-7775.24uncharacterized protein LOC107991269 OS=Cucumis melo OX=3656 GN=LOC107991269 PE=... [more]
tr|A0A1S4DUZ4|A0A1S4DUZ4_CUCME3.2e-4351.90E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 ... [more]
tr|A0A0A0K696|A0A0A0K696_CUCSA1.2e-4250.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G026750 PE=4 SV=1[more]
tr|A0A0A0K2W2|A0A0A0K2W2_CUCSA1.2e-4250.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G025210 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G001200.1CsaV3_4G001200.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 149..183
e-value: 2.1E-8
score: 34.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 150..191
score: 9.288
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 131..204
e-value: 2.5E-12
score: 47.8
NoneNo IPR availablePANTHERPTHR14155:SF447RING/U-BOX DOMAIN-CONTAINING PROTEINcoord: 125..181
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 125..181
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 149..184

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G001200CSPI04G01210Wild cucumber (PI 183967)cpicucB213
CsaV3_4G001200CsGy4G001100Cucumber (Gy14) v2cgybcucB171
CsaV3_4G001200MELO3C017919Melon (DHL92) v3.5.1cucmeB315
CsaV3_4G001200MELO3C017919.2Melon (DHL92) v3.6.1cucmedB307
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G001200Cucumber (Chinese Long) v3cuccucB185
CsaV3_4G001200Silver-seed gourdcarcucB0125
CsaV3_4G001200Silver-seed gourdcarcucB0803
CsaV3_4G001200Silver-seed gourdcarcucB0857
CsaV3_4G001200Cucumber (Gy14) v2cgybcucB336
CsaV3_4G001200Cucumber (Gy14) v1cgycucB102
CsaV3_4G001200Cucumber (Gy14) v1cgycucB329
CsaV3_4G001200Cucurbita maxima (Rimu)cmacucB0299
CsaV3_4G001200Cucurbita maxima (Rimu)cmacucB0437
CsaV3_4G001200Cucurbita maxima (Rimu)cmacucB0567
CsaV3_4G001200Cucurbita maxima (Rimu)cmacucB1062
CsaV3_4G001200Cucurbita moschata (Rifu)cmocucB0292
CsaV3_4G001200Cucurbita moschata (Rifu)cmocucB0431
CsaV3_4G001200Cucurbita moschata (Rifu)cmocucB0554
CsaV3_4G001200Cucurbita moschata (Rifu)cmocucB1044
CsaV3_4G001200Cucurbita pepo (Zucchini)cpecucB0162
CsaV3_4G001200Cucurbita pepo (Zucchini)cpecucB0393
CsaV3_4G001200Cucurbita pepo (Zucchini)cpecucB0703
CsaV3_4G001200Cucurbita pepo (Zucchini)cpecucB0768
CsaV3_4G001200Wild cucumber (PI 183967)cpicucB402
CsaV3_4G001200Bottle gourd (USVL1VR-Ls)cuclsiB287
CsaV3_4G001200Bottle gourd (USVL1VR-Ls)cuclsiB296
CsaV3_4G001200Melon (DHL92) v3.5.1cucmeB279
CsaV3_4G001200Melon (DHL92) v3.6.1cucmedB272
CsaV3_4G001200Watermelon (Charleston Gray)cucwcgB277
CsaV3_4G001200Watermelon (Charleston Gray)cucwcgB279
CsaV3_4G001200Watermelon (97103) v1cucwmB297
CsaV3_4G001200Watermelon (97103) v1cucwmB300
CsaV3_4G001200Watermelon (97103) v2cucwmbB273
CsaV3_4G001200Watermelon (97103) v2cucwmbB343
CsaV3_4G001200Wax gourdcucwgoB360