CsGy4G001100 (gene) Cucumber (Gy14) v2

Overview
NameCsGy4G001100
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionE3 ubiquitin-protein ligase RNF181-like
LocationChr4 : 683997 .. 684560 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTCGGCAATGGAGTATTGGAAGTTCAGTTAAGTTATCTGGAACGTGCAATTTCCGTTTCTTCATTCTCCCAACGAACCCTCTACGAAACTCAACCCACTCCATTCAACAATGCACTCTTCTATCTCTCCGTGCACCAACTTCAACATCCCTTGTTCCACATTCGGCAATTTCTCTACTCACTCAACATTCGAAGGGAAACCATAGCCCGGCAAATCGCTTCCTACGTCGCCCACATGTGTAACGGGAACACGGGGTGGAATTCGAATTTCTATGTCATCGCTAGAGTGGATTTGGTCCGAGTGATCCGGATAGAAGAACAACCAAGGGCGGAAGGATGGAGAGGAGTGGCGGTGGAGAGGTTGAGTAAGTTGAAATCGGAGGAGGAAAAGGGAGATTGCAGTGTGTGTTTGGATGAATTGGATTGTGAAAAGAGGGAGGTCATAAGGATTCCTTGCGGCCATGTTTACCATGAATCGTGCATCTTCAAGTGGCTTAGCAGCAGTAACTCTTGCCCTTTGTGTAGAAGCTCATTCCCACTACACAATGTCACAAACTGA

mRNA sequence

ATGTCTTTCGGCAATGGAGTATTGGAAGTTCAGTTAAGTTATCTGGAACGTGCAATTTCCGTTTCTTCATTCTCCCAACGAACCCTCTACGAAACTCAACCCACTCCATTCAACAATGCACTCTTCTATCTCTCCGTGCACCAACTTCAACATCCCTTGTTCCACATTCGGCAATTTCTCTACTCACTCAACATTCGAAGGGAAACCATAGCCCGGCAAATCGCTTCCTACGTCGCCCACATGTGTAACGGGAACACGGGGTGGAATTCGAATTTCTATGTCATCGCTAGAGTGGATTTGGTCCGAGTGATCCGGATAGAAGAACAACCAAGGGCGGAAGGATGGAGAGGAGTGGCGGTGGAGAGGTTGAGTAAGTTGAAATCGGAGGAGGAAAAGGGAGATTGCAGTGTGTGTTTGGATGAATTGGATTGTGAAAAGAGGGAGGTCATAAGGATTCCTTGCGGCCATGTTTACCATGAATCGTGCATCTTCAAGTGGCTTAGCAGCAGTAACTCTTGCCCTTTGTGTAGAAGCTCATTCCCACTACACAATGTCACAAACTGA

Coding sequence (CDS)

ATGTCTTTCGGCAATGGAGTATTGGAAGTTCAGTTAAGTTATCTGGAACGTGCAATTTCCGTTTCTTCATTCTCCCAACGAACCCTCTACGAAACTCAACCCACTCCATTCAACAATGCACTCTTCTATCTCTCCGTGCACCAACTTCAACATCCCTTGTTCCACATTCGGCAATTTCTCTACTCACTCAACATTCGAAGGGAAACCATAGCCCGGCAAATCGCTTCCTACGTCGCCCACATGTGTAACGGGAACACGGGGTGGAATTCGAATTTCTATGTCATCGCTAGAGTGGATTTGGTCCGAGTGATCCGGATAGAAGAACAACCAAGGGCGGAAGGATGGAGAGGAGTGGCGGTGGAGAGGTTGAGTAAGTTGAAATCGGAGGAGGAAAAGGGAGATTGCAGTGTGTGTTTGGATGAATTGGATTGTGAAAAGAGGGAGGTCATAAGGATTCCTTGCGGCCATGTTTACCATGAATCGTGCATCTTCAAGTGGCTTAGCAGCAGTAACTCTTGCCCTTTGTGTAGAAGCTCATTCCCACTACACAATGTCACAAACTGA

Protein sequence

MSFGNGVLEVQLSYLERAISVSSFSQRTLYETQPTPFNNALFYLSVHQLQHPLFHIRQFLYSLNIRRETIARQIASYVAHMCNGNTGWNSNFYVIARVDLVRVIRIEEQPRAEGWRGVAVERLSKLKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFKWLSSSNSCPLCRSSFPLHNVTN
Homology
[Close]
BLAST of CsGy4G001100 vs. NCBI nr
Match: XP_011654314.1 (PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus] >KGN52851.1 hypothetical protein Csa_4G003650 [Cucumis sativus])

HSP 1 Score: 377.5 bits (968), Expect = 2.7e-101
Identity = 182/185 (98.38%), Postives = 184/185 (99.46%), Query Frame = 0 

Query: 3   FGNGVLEVQLSYLERAISVSSFSQRTLYETQPTPFNNALFYLSVHQLQHPLFHIRQFLYS 62
           FGNGVLEVQLSYLERAISVSSFSQR LYETQPTPFNNALFYLSVHQLQHPLFHIRQFLYS
Sbjct: 18  FGNGVLEVQLSYLERAISVSSFSQRILYETQPTPFNNALFYLSVHQLQHPLFHIRQFLYS 77

Query: 63  LNIRRETIARQIASYVAHMCNGNTGWNSNFYVIARVDLVRVIRIEEQPRAEGWRGVAVER 122
           LNIRRETIARQIAS+VAHMCNGNTGWNSNFYVIARVDLVRVIRIEEQPRAEGWRGVAVER
Sbjct: 78  LNIRRETIARQIASFVAHMCNGNTGWNSNFYVIARVDLVRVIRIEEQPRAEGWRGVAVER 137

Query: 123 LSKLKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFKWLSSSNSCPLCRSSFPL 182
           LSKLKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFKWL+SSNSCPLCRSSFPL
Sbjct: 138 LSKLKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFKWLNSSNSCPLCRSSFPL 197

Query: 183 HNVTN 188
           HNVTN
Sbjct: 198 HNVTN 202

[Close]
BLAST of CsGy4G001100 vs. NCBI nr
Match: XP_016901482.1 (PREDICTED: uncharacterized protein LOC107991269 [Cucumis melo])

HSP 1 Score: 295.8 bits (756), Expect = 1.0e-76
Identity = 153/204 (75.00%), Postives = 165/204 (80.88%), Query Frame = 0 

Query: 3   FGNGVLEVQLSYLERAISVSSFSQRTLYETQPTPFNNALFYLSVHQLQHPLFHIRQFLYS 62
           FGNGVLE+QLSY+ER IS+SS SQR LYETQP PFNNA FYLSVH LQ PLF+IRQFL+S
Sbjct: 18  FGNGVLEIQLSYVERVISISSVSQRILYETQPIPFNNAHFYLSVHHLQDPLFYIRQFLFS 77

Query: 63  LNIRRETIARQIASYVAHMCNGNTGWNSNFYVIARVDLVRVIRIEEQ------------- 122
           LNIRRE IARQIASYVAHMCNGNTG NSNFYVIARVDLVR IRIEE+             
Sbjct: 78  LNIRRENIARQIASYVAHMCNGNTGRNSNFYVIARVDLVRAIRIEEESMWRDGGGVVVEA 137

Query: 123 --------PRAEGWRGVAV-ERLSKLKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHE 182
                   PRA   RGV V ERL KLKSEEE+GDCSVCLDELDC KREVIRIPCGHVYHE
Sbjct: 138 ETVVFDEVPRAR--RGVVVGERLRKLKSEEEEGDCSVCLDELDCGKREVIRIPCGHVYHE 197

Query: 183 SCIFKWLSSSNSCPLCRSSFPLHN 185
           SCIF+WL+++NSCPLCR+SFPL N
Sbjct: 198 SCIFEWLNNNNSCPLCRTSFPLDN 219

[Close]
BLAST of CsGy4G001100 vs. NCBI nr
Match: XP_016899530.1 (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis melo])

HSP 1 Score: 189.5 bits (480), Expect = 1.0e-44
Identity = 107/204 (52.45%), Postives = 136/204 (66.67%), Query Frame = 0 

Query: 4   GNGVLEVQLSYLERAISVSSFSQR---TLYETQPTPFNNALFYLSVHQLQHPLFHIRQFL 63
           GNG+LEV++S+ E+ IS+S  + R    L++T   P++NAL YL++ QLQ PLF+I QFL
Sbjct: 20  GNGILEVRISFFEQMISLSPVTGRPHQILHQTPRIPYHNALVYLTLRQLQSPLFYITQFL 79

Query: 64  YSLNIR---RETIARQIASYVAHMCNGNTGWNSNFYVIARVDLVRVI--RIEEQPRAEG- 123
            SLNIR    +++ARQIAS++  M + N   + NF++IA VD +RVI   +EEQ    G 
Sbjct: 80  SSLNIRPAASQSMARQIASHILQMPDRN--GDRNFHIIAEVDFIRVIWLELEEQSMGAGA 139

Query: 124 -------------WRGVAVERLSKLKSE---EEKGDCSVCLDELDCEKREVIRIPCGHVY 183
                         RGV   R  +LKSE   E+ GDCS+CLDEL CEKREVIRIPCGHVY
Sbjct: 140 EETVVFDEAPPALKRGVGKARGERLKSEEKVEDLGDCSICLDELSCEKREVIRIPCGHVY 199

[Close]
BLAST of CsGy4G001100 vs. NCBI nr
Match: XP_004144954.1 (PREDICTED: uncharacterized protein LOC101214496 [Cucumis sativus] >KGN43349.1 hypothetical protein Csa_7G025210 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 1.5e-43
Identity = 105/206 (50.97%), Postives = 139/206 (67.48%), Query Frame = 0 

Query: 4   GNGVLEVQLSYLERAISVSSFSQR---TLYETQPTPFNNALFYLSVHQLQHPLFHIRQFL 63
           GNGVL+V +S++++ ISVS  + R    L++T   P++NALFYLS+ QLQ PLF+I Q L
Sbjct: 20  GNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFYLSLRQLQSPLFYITQIL 79

Query: 64  YSLNIR---RETIARQIASYVAHMCNGNTGWNSNFYVIARVDLVRVI------------- 123
            SLNIR    + +AR+IAS++  M + N+   +NF+++A VD +R+I             
Sbjct: 80  SSLNIRPAASQNMARRIASHILQMPDRNS--ETNFHILAEVDFIRLIWLPSMGGGGAGAE 139

Query: 124 ---RIEEQPRAEGWRGVAVERLSKLKSE---EEKGDCSVCLDELDCEKREVIRIPCGHVY 183
               ++E P A   RGV V R  +L+SE   EE GDCS+CLDEL CEKREV+RIPCGHVY
Sbjct: 140 ETVVLDEAPPAVK-RGVGVARGERLRSEEKMEELGDCSICLDELSCEKREVMRIPCGHVY 199

Query: 184 HESCIFKWLSSSNSCPLCRSSFPLHN 185
           HESCIFKWL + NSCPLCR   PLH+
Sbjct: 200 HESCIFKWLENHNSCPLCRK--PLHH 220

[Close]
BLAST of CsGy4G001100 vs. NCBI nr
Match: XP_011659694.1 (PREDICTED: uncharacterized protein LOC105436225 [Cucumis sativus] >KGN43356.1 hypothetical protein Csa_7G026750 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 1.5e-43
Identity = 105/205 (51.22%), Postives = 138/205 (67.32%), Query Frame = 0 

Query: 4   GNGVLEVQLSYLERAISVSSFSQR---TLYETQPTPFNNALFYLSVHQLQHPLFHIRQFL 63
           GNGVL+V +S++++ ISVS  + R    L++T   P++NALFYLS+ QLQ PLF+I Q L
Sbjct: 20  GNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFYLSLRQLQSPLFYITQIL 79

Query: 64  YSLNIR---RETIARQIASYVAHMCNGNTGWNSNFYVIARVDLVRVI------------- 123
            SLNIR    + +AR+IAS++  M + N+   +NF+++A VD +R+I             
Sbjct: 80  SSLNIRPAASQNMARRIASHILQMPDRNS--ETNFHILAEVDFIRLIWLPSMGGGGAGAE 139

Query: 124 ---RIEEQPRAEGWRGVAVERLSKLKSE---EEKGDCSVCLDELDCEKREVIRIPCGHVY 183
               ++E P A   RGV V R  +L+SE   EE GDCS+CLDEL CEKREV+RIPCGHVY
Sbjct: 140 ETVVLDEAPPAVK-RGVGVARGERLRSEEKMEELGDCSICLDELSCEKREVMRIPCGHVY 199

[Close]
BLAST of CsGy4G001100 vs. TAIR10
Match: AT5G37200.1 (RING/U-box superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-10
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 0 

Query: 116 RGVAVERLSKLKSEEEKGDCSVCLDELDCEKREVIRIP-CGHVYHESCIFKWLSSSNSCP 175
           R V  +R+     EEE   CS+C+++      ++IR+P C H++H+ C+F+WL   NSCP
Sbjct: 140 RLVEEQRVESADLEEEDETCSICIEKFSESHEDIIRVPDCLHLFHQGCLFEWLGLQNSCP 199

Query: 176 LCR 178
           LCR
Sbjct: 200 LCR 202

[Close]
BLAST of CsGy4G001100 vs. TAIR10
Match: AT4G05350.1 (RING/U-box superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-09
Identity = 34/114 (29.82%), Postives = 56/114 (49.12%), Query Frame = 0 

Query: 68  ETIARQIASYVAHMCNGNTGWNSNFYVIARVDLVRVIRIEEQPRAEGWRG-VAVERLSKL 127
           + +A +I++    +  G+ G+            V V+  +E+       G +  E    L
Sbjct: 91  DDLAPKISTAAIDLGFGHNGFTLTMAATVTYRTVSVMSNDEKSLRMVLLGRMKAEEFKSL 150

Query: 128 KSEEEKGDCSVCLDEL--DCEKREVIRIPCGHVYHESCIFKWLSSSNSCPLCRS 179
           K E E   CS+CL+ L    + R+V R+ C HV+H  C+ +WL   N+CPLCR+
Sbjct: 151 KMETE--PCSICLESLVSGPKPRDVTRMTCSHVFHNGCLLEWLKRKNTCPLCRT 202

[Close]
BLAST of CsGy4G001100 vs. TAIR10
Match: AT4G12190.1 (RING/U-box superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-09
Identity = 26/63 (41.27%), Postives = 38/63 (60.32%), Query Frame = 0 

Query: 118 VAVERLSKLKSEEEKGDCSVCLDEL--DCEKREVIRIPCGHVYHESCIFKWLSSSNSCPL 177
           +  E L  LK E E   CS+CL+ L    + R++ R+ C HV+H  C+ +WL   N+CPL
Sbjct: 7   IKTEELKSLKMETE--PCSICLESLVSGPKPRDITRMTCSHVFHNGCLLEWLKRKNTCPL 66

Query: 178 CRS 179
           CR+
Sbjct: 67  CRT 67

[Close]
BLAST of CsGy4G001100 vs. TAIR10
Match: AT1G35330.1 (RING/U-box superfamily protein)

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-09
Identity = 22/48 (45.83%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 134 DCSVCLDELDCEKREVIRIPCGHVYHESCIFKWLSSSNSCPLCRSSFP 182
           +C++CL+E + E+   +  PC H +H SCI  WLSS ++CP+CR+S P
Sbjct: 127 ECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASLP 174

[Close]
BLAST of CsGy4G001100 vs. TAIR10
Match: AT3G19950.1 (RING/U-box superfamily protein)

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-09
Identity = 23/60 (38.33%), Postives = 38/60 (63.33%), Query Frame = 0 

Query: 122 RLSKLKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFKWLSSSNSCPLCRSSFP 181
           +++K   + E   C+VC+DE + +  +V ++PC HV+H+ C+  WL   NSCP+CR   P
Sbjct: 203 KVTKDMLKSEMNQCAVCMDEFE-DGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELP 261

[Close]
BLAST of CsGy4G001100 vs. Swiss-Prot
Match: sp|Q3T0W3|RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus OX=9913 GN=RNF181 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.2e-09
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 0 

Query: 119 AVERLSK--LKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFKWLSSSNSCPLC 178
           AVE L +  ++  + +  C VCL E + E+   I +PC H++H +CI  WLS +NSCPLC
Sbjct: 58  AVENLPRTVIRGSQAELKCPVCLLEFE-EEETAIEMPCHHLFHSNCILPWLSKTNSCPLC 117

Query: 179 RSSFPLHNVT 187
           R   P  + T
Sbjct: 118 RHELPTDDDT 126

[Close]
BLAST of CsGy4G001100 vs. Swiss-Prot
Match: sp|Q9CY62|RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus OX=10090 GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.2e-09
Identity = 30/64 (46.88%), Postives = 38/64 (59.38%), Query Frame = 0 

Query: 120 VERLSKLKSEEEKGD--CSVCLDELDCEKREVIRIPCGHVYHESCIFKWLSSSNSCPLCR 179
           VE L +      K D  C VCL E + E+  VI +PC H++H +CI  WLS +NSCPLCR
Sbjct: 71  VESLPRTVISSAKADLKCPVCLLEFEAEE-TVIEMPCHHLFHSNCILPWLSKTNSCPLCR 130

Query: 180 SSFP 182
              P
Sbjct: 131 HELP 133

[Close]
BLAST of CsGy4G001100 vs. Swiss-Prot
Match: sp|Q6AXU4|RN181_RAT (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus OX=10116 GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.2e-09
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 0 

Query: 126 LKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFKWLSSSNSCPLCRSSFP 182
           ++S + +  C VCL E + E+  VI +PC H++H +CI  WLS +NSCPLCR   P
Sbjct: 79  IRSSKAELKCPVCLLEFE-EEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELP 133

[Close]
BLAST of CsGy4G001100 vs. Swiss-Prot
Match: sp|Q9P0P0|RN181_HUMAN (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-08
Identity = 29/69 (42.03%), Postives = 41/69 (59.42%), Query Frame = 0 

Query: 120 VERLSK--LKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFKWLSSSNSCPLCR 179
           VE L +  ++  + +  C VCL E + E+   I +PC H++H SCI  WLS +NSCPLCR
Sbjct: 59  VENLPRTVIRGSQAELKCPVCLLEFE-EEETAIEMPCHHLFHSSCILPWLSKTNSCPLCR 118

Query: 180 SSFPLHNVT 187
              P  + T
Sbjct: 119 YELPTDDDT 126

[Close]
BLAST of CsGy4G001100 vs. Swiss-Prot
Match: sp|Q5M974|RN181_XENTR (E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis OX=8364 GN=rnf181 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-08
Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 0 

Query: 120 VERLSKLKSEEEKGD----CSVCLDELDCEKREVIR-IPCGHVYHESCIFKWLSSSNSCP 179
           VE L K+    E+ D    C VCL  L+ E+ E +R +PC H++H SCI  WL  +NSCP
Sbjct: 60  VESLPKVTVTPEQADAALKCPVCL--LEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCP 119

Query: 180 LCRSSFP 182
           LCR   P
Sbjct: 120 LCRHELP 124

[Close]
BLAST of CsGy4G001100 vs. TrEMBL
Match: tr|A0A0A0KYC0|A0A0A0KYC0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G003650 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 1.8e-101
Identity = 182/185 (98.38%), Postives = 184/185 (99.46%), Query Frame = 0 

Query: 3   FGNGVLEVQLSYLERAISVSSFSQRTLYETQPTPFNNALFYLSVHQLQHPLFHIRQFLYS 62
           FGNGVLEVQLSYLERAISVSSFSQR LYETQPTPFNNALFYLSVHQLQHPLFHIRQFLYS
Sbjct: 18  FGNGVLEVQLSYLERAISVSSFSQRILYETQPTPFNNALFYLSVHQLQHPLFHIRQFLYS 77

Query: 63  LNIRRETIARQIASYVAHMCNGNTGWNSNFYVIARVDLVRVIRIEEQPRAEGWRGVAVER 122
           LNIRRETIARQIAS+VAHMCNGNTGWNSNFYVIARVDLVRVIRIEEQPRAEGWRGVAVER
Sbjct: 78  LNIRRETIARQIASFVAHMCNGNTGWNSNFYVIARVDLVRVIRIEEQPRAEGWRGVAVER 137

Query: 123 LSKLKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFKWLSSSNSCPLCRSSFPL 182
           LSKLKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFKWL+SSNSCPLCRSSFPL
Sbjct: 138 LSKLKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFKWLNSSNSCPLCRSSFPL 197

Query: 183 HNVTN 188
           HNVTN
Sbjct: 198 HNVTN 202

[Close]
BLAST of CsGy4G001100 vs. TrEMBL
Match: tr|A0A1S4DZR1|A0A1S4DZR1_CUCME (uncharacterized protein LOC107991269 OS=Cucumis melo OX=3656 GN=LOC107991269 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 6.7e-77
Identity = 153/204 (75.00%), Postives = 165/204 (80.88%), Query Frame = 0 

Query: 3   FGNGVLEVQLSYLERAISVSSFSQRTLYETQPTPFNNALFYLSVHQLQHPLFHIRQFLYS 62
           FGNGVLE+QLSY+ER IS+SS SQR LYETQP PFNNA FYLSVH LQ PLF+IRQFL+S
Sbjct: 18  FGNGVLEIQLSYVERVISISSVSQRILYETQPIPFNNAHFYLSVHHLQDPLFYIRQFLFS 77

Query: 63  LNIRRETIARQIASYVAHMCNGNTGWNSNFYVIARVDLVRVIRIEEQ------------- 122
           LNIRRE IARQIASYVAHMCNGNTG NSNFYVIARVDLVR IRIEE+             
Sbjct: 78  LNIRRENIARQIASYVAHMCNGNTGRNSNFYVIARVDLVRAIRIEEESMWRDGGGVVVEA 137

Query: 123 --------PRAEGWRGVAV-ERLSKLKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHE 182
                   PRA   RGV V ERL KLKSEEE+GDCSVCLDELDC KREVIRIPCGHVYHE
Sbjct: 138 ETVVFDEVPRAR--RGVVVGERLRKLKSEEEEGDCSVCLDELDCGKREVIRIPCGHVYHE 197

Query: 183 SCIFKWLSSSNSCPLCRSSFPLHN 185
           SCIF+WL+++NSCPLCR+SFPL N
Sbjct: 198 SCIFEWLNNNNSCPLCRTSFPLDN 219

[Close]
BLAST of CsGy4G001100 vs. TrEMBL
Match: tr|A0A1S4DUZ4|A0A1S4DUZ4_CUCME (E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.8e-45
Identity = 107/204 (52.45%), Postives = 136/204 (66.67%), Query Frame = 0 

Query: 4   GNGVLEVQLSYLERAISVSSFSQR---TLYETQPTPFNNALFYLSVHQLQHPLFHIRQFL 63
           GNG+LEV++S+ E+ IS+S  + R    L++T   P++NAL YL++ QLQ PLF+I QFL
Sbjct: 20  GNGILEVRISFFEQMISLSPVTGRPHQILHQTPRIPYHNALVYLTLRQLQSPLFYITQFL 79

Query: 64  YSLNIR---RETIARQIASYVAHMCNGNTGWNSNFYVIARVDLVRVI--RIEEQPRAEG- 123
            SLNIR    +++ARQIAS++  M + N   + NF++IA VD +RVI   +EEQ    G 
Sbjct: 80  SSLNIRPAASQSMARQIASHILQMPDRN--GDRNFHIIAEVDFIRVIWLELEEQSMGAGA 139

Query: 124 -------------WRGVAVERLSKLKSE---EEKGDCSVCLDELDCEKREVIRIPCGHVY 183
                         RGV   R  +LKSE   E+ GDCS+CLDEL CEKREVIRIPCGHVY
Sbjct: 140 EETVVFDEAPPALKRGVGKARGERLKSEEKVEDLGDCSICLDELSCEKREVIRIPCGHVY 199

[Close]
BLAST of CsGy4G001100 vs. TrEMBL
Match: tr|A0A0A0K696|A0A0A0K696_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 9.8e-44
Identity = 105/205 (51.22%), Postives = 138/205 (67.32%), Query Frame = 0 

Query: 4   GNGVLEVQLSYLERAISVSSFSQR---TLYETQPTPFNNALFYLSVHQLQHPLFHIRQFL 63
           GNGVL+V +S++++ ISVS  + R    L++T   P++NALFYLS+ QLQ PLF+I Q L
Sbjct: 20  GNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFYLSLRQLQSPLFYITQIL 79

Query: 64  YSLNIR---RETIARQIASYVAHMCNGNTGWNSNFYVIARVDLVRVI------------- 123
            SLNIR    + +AR+IAS++  M + N+   +NF+++A VD +R+I             
Sbjct: 80  SSLNIRPAASQNMARRIASHILQMPDRNS--ETNFHILAEVDFIRLIWLPSMGGGGAGAE 139

Query: 124 ---RIEEQPRAEGWRGVAVERLSKLKSE---EEKGDCSVCLDELDCEKREVIRIPCGHVY 183
               ++E P A   RGV V R  +L+SE   EE GDCS+CLDEL CEKREV+RIPCGHVY
Sbjct: 140 ETVVLDEAPPAVK-RGVGVARGERLRSEEKMEELGDCSICLDELSCEKREVMRIPCGHVY 199

[Close]
BLAST of CsGy4G001100 vs. TrEMBL
Match: tr|A0A0A0K2W2|A0A0A0K2W2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G025210 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 9.8e-44
Identity = 105/206 (50.97%), Postives = 139/206 (67.48%), Query Frame = 0 

Query: 4   GNGVLEVQLSYLERAISVSSFSQR---TLYETQPTPFNNALFYLSVHQLQHPLFHIRQFL 63
           GNGVL+V +S++++ ISVS  + R    L++T   P++NALFYLS+ QLQ PLF+I Q L
Sbjct: 20  GNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFYLSLRQLQSPLFYITQIL 79

Query: 64  YSLNIR---RETIARQIASYVAHMCNGNTGWNSNFYVIARVDLVRVI------------- 123
            SLNIR    + +AR+IAS++  M + N+   +NF+++A VD +R+I             
Sbjct: 80  SSLNIRPAASQNMARRIASHILQMPDRNS--ETNFHILAEVDFIRLIWLPSMGGGGAGAE 139

Query: 124 ---RIEEQPRAEGWRGVAVERLSKLKSE---EEKGDCSVCLDELDCEKREVIRIPCGHVY 183
               ++E P A   RGV V R  +L+SE   EE GDCS+CLDEL CEKREV+RIPCGHVY
Sbjct: 140 ETVVLDEAPPAVK-RGVGVARGERLRSEEKMEELGDCSICLDELSCEKREVMRIPCGHVY 199

Query: 184 HESCIFKWLSSSNSCPLCRSSFPLHN 185
           HESCIFKWL + NSCPLCR   PLH+
Sbjct: 200 HESCIFKWLENHNSCPLCRK--PLHH 220

The following BLAST results are available for this feature:
BLAST of CsGy4G001100 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011654314.12.7e-10198.38PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus] >KGN52851.1... [more]
XP_016901482.11.0e-7675.00PREDICTED: uncharacterized protein LOC107991269 [Cucumis melo][more]
XP_016899530.11.0e-4452.45PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis melo][more]
XP_004144954.11.5e-4350.97PREDICTED: uncharacterized protein LOC101214496 [Cucumis sativus] >KGN43349.1 hy... [more]
XP_011659694.11.5e-4351.22PREDICTED: uncharacterized protein LOC105436225 [Cucumis sativus] >KGN43356.1 hy... [more]
BLAST of CsGy4G001100 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G37200.11.2e-1041.27RING/U-box superfamily protein[more]
AT4G05350.11.7e-0929.82RING/U-box superfamily protein[more]
AT4G12190.11.7e-0941.27RING/U-box superfamily protein[more]
AT1G35330.12.2e-0945.83RING/U-box superfamily protein[more]
AT3G19950.12.2e-0938.33RING/U-box superfamily protein[more]
BLAST of CsGy4G001100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q3T0W3|RN181_BOVIN6.2e-0941.43E3 ubiquitin-protein ligase RNF181 OS=Bos taurus OX=9913 GN=RNF181 PE=2 SV=1[more]
sp|Q9CY62|RN181_MOUSE6.2e-0946.88E3 ubiquitin-protein ligase RNF181 OS=Mus musculus OX=10090 GN=Rnf181 PE=1 SV=1[more]
sp|Q6AXU4|RN181_RAT6.2e-0946.43E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus OX=10116 GN=Rnf181 PE=1 ... [more]
sp|Q9P0P0|RN181_HUMAN1.4e-0842.03E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1[more]
sp|Q5M974|RN181_XENTR1.4e-0846.27E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis OX=8364 GN=rnf181 PE=2 ... [more]
BLAST of CsGy4G001100 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KYC0|A0A0A0KYC0_CUCSA1.8e-10198.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G003650 PE=4 SV=1[more]
tr|A0A1S4DZR1|A0A1S4DZR1_CUCME6.7e-7775.00uncharacterized protein LOC107991269 OS=Cucumis melo OX=3656 GN=LOC107991269 PE=... [more]
tr|A0A1S4DUZ4|A0A1S4DUZ4_CUCME6.8e-4552.45E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 ... [more]
tr|A0A0A0K696|A0A0A0K696_CUCSA9.8e-4451.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G026750 PE=4 SV=1[more]
tr|A0A0A0K2W2|A0A0A0K2W2_CUCSA9.8e-4450.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G025210 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G001100.1CsGy4G001100.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 135..176
e-value: 4.8E-8
score: 42.7
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 134..177
e-value: 2.8E-13
score: 49.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 135..177
score: 13.537
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 106..182
e-value: 1.8E-18
score: 68.0
NoneNo IPR availablePANTHERPTHR14155:SF430GH10160Pcoord: 73..178
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 73..178
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 134..182

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy4G001100Csa4G003650Cucumber (Chinese Long) v2cgybcuB165
CsGy4G001100MELO3C017919Melon (DHL92) v3.5.1cgybmeB269
CsGy4G001100CSPI04G01210Wild cucumber (PI 183967)cgybcpiB168
CsGy4G001100MELO3C017919.2Melon (DHL92) v3.6.1cgybmedB266
CsGy4G001100CsaV3_4G001200Cucumber (Chinese Long) v3cgybcucB171
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy4G001100Wax gourdcgybwgoB342
CsGy4G001100Cucumber (Gy14) v2cgybcgybB134
CsGy4G001100Cucurbita maxima (Rimu)cgybcmaB486
CsGy4G001100Cucurbita maxima (Rimu)cgybcmaB516
CsGy4G001100Cucurbita maxima (Rimu)cgybcmaB577
CsGy4G001100Cucurbita moschata (Rifu)cgybcmoB456
CsGy4G001100Cucurbita moschata (Rifu)cgybcmoB472
CsGy4G001100Cucurbita moschata (Rifu)cgybcmoB487
CsGy4G001100Cucurbita pepo (Zucchini)cgybcpeB541
CsGy4G001100Cucurbita pepo (Zucchini)cgybcpeB553
CsGy4G001100Cucumber (Chinese Long) v2cgybcuB191
CsGy4G001100Bottle gourd (USVL1VR-Ls)cgyblsiB257
CsGy4G001100Melon (DHL92) v3.5.1cgybmeB239
CsGy4G001100Melon (DHL92) v3.6.1cgybmedB238
CsGy4G001100Watermelon (Charleston Gray)cgybwcgB251
CsGy4G001100Watermelon (97103) v1cgybwmB269
CsGy4G001100Wild cucumber (PI 183967)cgybcpiB194
CsGy4G001100Silver-seed gourdcarcgybB0117
CsGy4G001100Silver-seed gourdcarcgybB0759
CsGy4G001100Silver-seed gourdcarcgybB0806
CsGy4G001100Cucumber (Chinese Long) v3cgybcucB195
CsGy4G001100Watermelon (97103) v2cgybwmbB259
CsGy4G001100Watermelon (97103) v2cgybwmbB318