CsaV3_3G043640 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G043640
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Description50S ribosomal protein L34
Locationchr3 : 35469369 .. 35474983 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGATTTTTTTTCTTCTTTTAAAAAGATGATAAATGAAAAGAAAAAGGAAATGTACCCTACGGTTCCTCGCACTTCTGTTCACACCCCACCCCACCTTCGCCACAGCGCACACCGCCGCTAACCCACAGGGAATTTTCTTTCTTCTCCCTCGATCTCCAGCGGCAGCTACACCAACTTTTCATTTTGCTGCACACTGTCACCAACCTCACTGCCACGCCCACCTTTTATTTCTAAGGGTTAGTGAGCTCGTTCTTTTGCTAATGGCGTCCAAACTTCTTATTCGTACGGGAAGTTCTTTGATGAATCGATTGCGATTAAGCTCAGCGCATCAGAATAACAGGATTTGGGGTAGCCAAGCTCTGTCCCATGGCCATGGCGTTGAAGTTACTCCGATGCTTTTTCCTTCAGTTTCTAAGCACCAGACTGCTCATCCTTTGCAGCAGAATGACACCGAATCGTTGAGGCAGCTCCAATCGGAAGGCATTTTCTTTCCTTTTGGGCTTCCTTCGCTCCGGTTCTTTTTGCCTGACGGTATGCTTCTTTTTCTTTTCTTACTCTGCTTGAAATGGTTTTGAAAGTCAATTTATAGTGTATGTGGATTCTGTTGCGTGTTAATGTTTGGTATGAGTTAGTAGCATGATTTTTCAGGCTGCATCTTTTTGTGGTAGTTTCTAATTTCAATTAATTGACTTATATAATTATAAGTGAAAGTGAGATTGTCAAGTGTTTCTGAGCGGCATATCTTTTTGCCTCTTTTGAGGCTATGAGAAAGTGTTGGGTGCCAAAACTATTAGCCAGTCACTCAAGCTTCAGAAATGGCTGCTCAATTAATCTTGAGAACCTTCTTGGCAGTGCAGATACTTGCCTGCCAGCGTCACTTTGATCATGCTGAAGGATATCTACTTGTTCTGTAAGGATCTGACTTCGGTTCTGGAAAATATTCTGTGAACCATGTTCTGTAAGGATTAGGGCTCCAAACACGAGTAAGCCTGTCTCCATGCAATAAGTTGAAACCCTCTATTAAAGTAAGAATTGAGATCACCTTCATCGTTTCTCTATTGGAGAGAGTGTAAAAAACCAAAGGATAAGGACACAAAACTCCCTGGCCAAACCAAAAATTTAGATACCTGAAGAATTTTGAAGGACAAATGATATAACCAAGGAAACGCATAAATGAATGTCCTTTTCCTAGCCCAATGATCTTCTAAAATATATGTTTCCTTCCTTTCCCCCACAACACAAAGACCAGATGGGAAAAGGAAGGGAGCTCAAAAGAGATCTCTTTCCACAGATGTCGAAGTGTGCCTTTAACACCTTTCTCCGTTCGTTCAAAGGGGTGGGGACTATTTTTACTCATTTTTTTGTGGTATATCTAACCGGAGGGAAATTGGAGAATCTTTATCTACACTTGAAGCAAAGGTGTTTTGTAGCAAAGTAATGATAGGATTGGGAGTAGGTAAAATATGGCAATTGGGAGGGTGATTTATTTGGTGTTTCTCAGGGAGATGTATCAATAAATGAAAGTAGGCAAAATGTGGGAGACTAGTTGGAGGTTTATGGGTAAGATTAGTATAGTTTTAGTAAGGGATTAGGGGTAATTAAGGACCTTGGGCAGTGAGAAGAATTTGGGTAGTGTCCTTTGTAGGACTTTAGGAGAGAAGTAGCCCTCTAAAAAAGGCTATTATATTTTAATTTATTTACCAATTGCAATATAGTTATTGCTAGTGTTTATTAGGGATTGGTAATGGGCTCTGTTGCTTGGATTTCTGAGAACTGTTCCTGTGAAAAAAATTTGCCAGTGTAGTTTGTTCATATGGTATCTATTTTCTGTTTTAGAAAGCTGTTGGAAGAGTGAGTTTTTATCTTCTCATTTTTATTCATTCTCTCATTGATGCCAACTTAAAAATACATCATACAGAGATTAGTGTATAACGGAAGAATCAAGTTAAAGAGCCGGGTACAACAGTCGTACTTATGTTTAGTGTGTTTTTTTTTTTTTTTTTGTCTATTCCTACCAAATTGTTATAAGTATGAATTTGTTCTAGGAGCATCAATTTTGTCCATAGCTTTGGATCTAGAAGTGCTCAATTTTGTGTTAGAGAAGTTTTTGCATGATATTATTGAGGGCTTGGAGGGAGTTGGATGATTCGAATGAAAAAGAGTTTTAAGGTTTCAATCAACGAAGCATAGACGTGTACAGTGAAAGAGAAGAACAAAAATGAATGCCAACTAACAAGGTAATGATAGAAAACGAGAGTAAGAAAAAATCCATTGGATCAAAGATTAGCCACAACTTTGTTTAGAAACTATCAAATCATATGCGCTATTGAATTGTGGCTTGACGACATCAATACGAGCCGAGAACACATAAAATAACTAAAGGGTAAACAAATTGATGAGGCAAAAGAGAAGGAAAGAAGAATGATGCAAGGGGAGGGAGAACCTACTGACAAAGTTATGGTTGGAGAGACAATGTAATGTGCAAGGAAAAGCTATCTGGTGGTTAAATGGTTGGAAAAAATGTGGTGGCGGATGAAAGAAGTAACAAACACAAGTGTTGTTCAAAGCGCCACTGCTAGTTTAATGAGGAGAGCATGAAAAAAATTATAGAGGGACAACCATGAAGGAACCATTGAAGTAAATCATTTTTGGCGACAAGTGTAGGTGTGGCTAAAGAAGAAGTCCCAAAGAAGACAATAGGGTAGGGTTCTTTTTCAAGTGGATATCCATGAACGGTAGCCGGTAGGTTAGAAACTGAAAAGAAAAAGAGTACTTATTTCATAATCATGGGTTAGGTAAGTTATGTTTTTATGGGATGGATTTTAACCATGGAGATGAGGTTGATTCTATTTGCAAAGTCAGAAAACAAGATTGTTTTACAAGCTGGGTTTCGGTTTGGGTTTCCTATTCTGTCTTAAACCCAGGAGTTTACCTACTATGGTGACGTGATATACCATACCCATCAGAAGGAACTACTCTAACTGCATGGTATTTTGCTCTTCACCCACACTTTCGACCATCACTATCGAGCAAGTTAACAATGCTAATCATTACATGTTCGCAAGCAAATGCCATCGATCATCAATACCATCTACCATGTCTGTGCCTCAGCCACTCGCCACCTTCCATTTCTCACGATTGTCGGAGTGCTAACCATCTGTTTTCAATTTTAATTTTGTAAATGTGTATTAAATTATGTTTTTTTTGTTGTAAAAAAATTGTATATCATTCCACTATTGCCTGATTTTGTCTTTATGTTTTCATAAGCACACTTTGAGGACAAGGTCCCTTTAAAAGGTGGGGTGATGTGAGAGATACTATTTAGGGGTATATGGGCAAGATTAGCATGATATTAGTAATAATTAGCAAGGGGTGTCTTGATTATAAATAGAGTGTGTTAAGGATCTTAGACGTTATGAAGAATTTAGGTAGTGTCCTTTGTGGAACTTTGAGAGACAAGTAACTCTCTTCTATTACATTGTAATTTTTTTACCAATATTGCAGTATAGTATAGTAATCTTTACTGTTCTTTTGTAGTTTTTGTGTCCGGGTACTAAACATTGTGTTATTTTGAGTTGCTTATGAGGGGAGGCCGTAGGTGTCAAAGCTCTCATTTTCAGCCTTTCTGGGAGAAATCTCTCTTTAGCATTCTTGATGGAGGTGCACTTCAAGTTGCACACCCGAGTAAATAAATACTTAGTTTTGGTAGTTTGTGATTATCTTAACCTTCCTGTGACTAGCTGTCCGAGTTATGATGTATGGATTCCCTTCATTAAATGGAGCTTTGTAGATAACAATTTTGTGGACTCGGATGATACTTTAATCTTCATTGCTTTTTTGTATTATTATTTTTTCAAAATTAAGGCATAATTCTTTGTTTCTGCAGGAGATGCTTCTTCAACACAAGAACCGATGCTCTTATTTCCTAAAAGGACATTTCAACCTAGCACCATCAGGCGAAAAAGGAATCATGGTTTTTTTGCTCGGTATCTCTCCATTGGCTTTTCTGCATGTATATTCTTTTATGTAATGTTTTTAGAAAGGACTATCTATAGTTTGCAAATAAACATTATTCTTTCCTTAAGCATGCCCTATTAAGTTTTGTGGTAAAGTTCTTTTTTCGTGGAAGAAACATGAGGAACTTCATTAATGAATGAAGTGAAAAAAATGGGTGCAAAAACACTCCCAATAGGCATAGGTGGATTATCACAAAACTGGATAATCCACCTATCAGAAAATATGCCTGGAAATTGGAATGTGTATACCAACCAACCACTACGCTTAGAAACTCACGCATGTTTTCAATTATGAAGCTTGGAGTCAATTCTTACATTAGCCAGCGGCCAAAAGATTGAACTACTCTTTTGATTTTTACCCAATGGGAAACAAAAATAGTTGGAAGGACAAGTACCTAGCTTACAACCAAATTTCCCGTTGGAAAAAGAAAAATCTGACTTATTATCATGAATGCCAACATTTCATGCCATAATTTACTTTCAACCCTGAAGTGGCATCATAGGTTGTCCAACTTCCTTAATGTAACTAGTTTATCTGTATTGGTTGTTTGGAGTAAAGAAAAAAAAGTTACCACCCTACAAAAATTAGTTTGGCTGGCTAGATTAGCTTTAGAAGGGAATGTAACAAATCATTACATAAGTGCATTCTTAACCAAAAAAAAAAAGACTCATAATGTGCATTAGAAATCACTCGTTTATCTTTGAACAGCAAAGCAACCAAGGGAGGACGGAAAGTTATTGCTCGAAGGATTGCAAAGGGGCGCTCAAGAATAACTGCATAATGTTCATCTCAAGTCAGGTGCAATTGAATCGCCCTACCAATATCTTATTGTGTTAGTTTTTTTAAATTTAAAATTAACTCAATAGAATGGTATCGCTGGCTGAATAACCCCTTTTGTCTTTCTTCTTAGGCCTCGGAATACAGTCTGTATAAACTTCTCTGTTTTTAGAATTACCATGCATTAAACACCTTCCATATTGAAGTTTAAGTTACTCTTAATTTTTATTTCTTTCTTAACTTAGCTAGAGAATTGTTTACTTTTGGTTCATGGTGAGTGTTGATACTGGCTCCTGAGCAAATAAACAAACTCAAGTCCGAAAGTTGGGAAAAGGAAGAGGATGTGATTTTTTAAGTCAGTTTAGGACTAAAATCATTACTTATCCATATGTTCTTTTGTTTTAATATTATTTTCTCCCACAAAAATAAATTATTAATAGGCCAAATTGCAAAAATCACCTTTAGTACTTGTAAAGTTGCAATTACATGTCAAATTCTTAAACTTGTACAATTGTAAAAATCTTAACAATCTTTGAAGGTTGCTAGTCAATTTTCATCATTTGGGGCTTCAATTTTTCAAACTAGGGTAAGTTTAAAAGTTCAATTTTCACCATTTTAAAATGTGGGTCTCAATTGTACACTTTCAAGTTAGAAATTGAAAGTACCACCATAATTTGGCTTTTCTTTTATGTTATTAGGTCTTGTGGATATTATTTTGGAGTTTGTATATTTGGATTCATTTTGTTGTAGTTTTATACTTCTAAACATCATTCATTTTAGTTACTATACTTTTCGAAATATTTGGTTTACCTTTATACTTC

mRNA sequence

ATGAAAAGAAAAAGGAAATGTACCCTACGGTTCCTCGCACTTCTGTTCACACCCCACCCCACCTTCGCCACAGCGCACACCGCCGCTAACCCACAGGGAATTTTCTTTCTTCTCCCTCGATCTCCAGCGGCAGCTACACCAACTTTTCATTTTGCTGCACACTGTCACCAACCTCACTGCCACGCCCACCTTTTATTTCTAAGGGTTAGTGAGCTCGTTCTTTTGCTAATGGCGTCCAAACTTCTTATTCGTACGGGAAGTTCTTTGATGAATCGATTGCGATTAAGCTCAGCGCATCAGAATAACAGGATTTGGGGTAGCCAAGCTCTGTCCCATGGCCATGGCGTTGAAGTTACTCCGATGCTTTTTCCTTCAGTTTCTAAGCACCAGACTGCTCATCCTTTGCAGCAGAATGACACCGAATCGTTGAGGCAGCTCCAATCGGAAGGCATTTTCTTTCCTTTTGGGCTTCCTTCGCTCCGGTTCTTTTTGCCTGACGGAGATGCTTCTTCAACACAAGAACCGATGCTCTTATTTCCTAAAAGGACATTTCAACCTAGCACCATCAGGCGAAAAAGGAATCATGGTTTTTTTGCTCGCAAAGCAACCAAGGGAGGACGGAAAGTTATTGCTCGAAGGATTGCAAAGGGGCGCTCAAGAATAACTGCATAA

Coding sequence (CDS)

ATGAAAAGAAAAAGGAAATGTACCCTACGGTTCCTCGCACTTCTGTTCACACCCCACCCCACCTTCGCCACAGCGCACACCGCCGCTAACCCACAGGGAATTTTCTTTCTTCTCCCTCGATCTCCAGCGGCAGCTACACCAACTTTTCATTTTGCTGCACACTGTCACCAACCTCACTGCCACGCCCACCTTTTATTTCTAAGGGTTAGTGAGCTCGTTCTTTTGCTAATGGCGTCCAAACTTCTTATTCGTACGGGAAGTTCTTTGATGAATCGATTGCGATTAAGCTCAGCGCATCAGAATAACAGGATTTGGGGTAGCCAAGCTCTGTCCCATGGCCATGGCGTTGAAGTTACTCCGATGCTTTTTCCTTCAGTTTCTAAGCACCAGACTGCTCATCCTTTGCAGCAGAATGACACCGAATCGTTGAGGCAGCTCCAATCGGAAGGCATTTTCTTTCCTTTTGGGCTTCCTTCGCTCCGGTTCTTTTTGCCTGACGGAGATGCTTCTTCAACACAAGAACCGATGCTCTTATTTCCTAAAAGGACATTTCAACCTAGCACCATCAGGCGAAAAAGGAATCATGGTTTTTTTGCTCGCAAAGCAACCAAGGGAGGACGGAAAGTTATTGCTCGAAGGATTGCAAAGGGGCGCTCAAGAATAACTGCATAA

Protein sequence

MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHCHAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Homology
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BLAST of CsaV3_3G043640 vs. NCBI nr
Match: KGN59796.1 (hypothetical protein Csa_3G847215 [Cucumis sativus])

HSP 1 Score: 443.0 bits (1138), Expect = 6.2e-121
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0 

Query: 1   MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHC 60
           MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHC
Sbjct: 1   MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHC 60

Query: 61  HAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTP 120
           HAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTP
Sbjct: 61  HAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTP 120

Query: 121 MLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFP 180
           MLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFP
Sbjct: 121 MLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFP 180

Query: 181 KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA 224
           KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Sbjct: 181 KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA 223

[Close]
BLAST of CsaV3_3G043640 vs. NCBI nr
Match: XP_004141160.1 (PREDICTED: uncharacterized protein LOC101210601 [Cucumis sativus])

HSP 1 Score: 290.4 bits (742), Expect = 5.1e-75
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0 

Query: 77  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ 136
           MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ
Sbjct: 1   MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ 60

Query: 137 QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 196
           QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG
Sbjct: 61  QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 197 FFARKATKGGRKVIARRIAKGRSRITA 224
           FFARKATKGGRKVIARRIAKGRSRITA
Sbjct: 121 FFARKATKGGRKVIARRIAKGRSRITA 147

[Close]
BLAST of CsaV3_3G043640 vs. NCBI nr
Match: XP_008447614.1 (PREDICTED: uncharacterized protein LOC103490028 [Cucumis melo])

HSP 1 Score: 285.4 bits (729), Expect = 1.7e-73
Identity = 144/147 (97.96%), Postives = 145/147 (98.64%), Query Frame = 0 

Query: 77  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ 136
           MASKLLIRTG+S MNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQ AHPLQ
Sbjct: 1   MASKLLIRTGNSFMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQIAHPLQ 60

Query: 137 QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 196
           QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG
Sbjct: 61  QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 197 FFARKATKGGRKVIARRIAKGRSRITA 224
           FFARKATKGGRKVIARRIAKGRSRITA
Sbjct: 121 FFARKATKGGRKVIARRIAKGRSRITA 147

[Close]
BLAST of CsaV3_3G043640 vs. NCBI nr
Match: XP_022955352.1 (uncharacterized protein LOC111457406 isoform X2 [Cucurbita moschata] >XP_022955353.1 uncharacterized protein LOC111457406 isoform X2 [Cucurbita moschata])

HSP 1 Score: 269.2 bits (687), Expect = 1.2e-68
Identity = 136/147 (92.52%), Postives = 141/147 (95.92%), Query Frame = 0 

Query: 77  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ 136
           MASKLLIRTG+SLMNRLRLSS HQNN IW SQ+LS GHGV+VTPMLFPSVSKHQTAH LQ
Sbjct: 1   MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQ 60

Query: 137 QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 196
           QNDTESLR+L+SEGIFFPFGLPSLRFFLPDGD SSTQEPMLLFPKRTFQPSTIRRKRNHG
Sbjct: 61  QNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 197 FFARKATKGGRKVIARRIAKGRSRITA 224
           FFARKATKGGRKVIARRIAKGRSRITA
Sbjct: 121 FFARKATKGGRKVIARRIAKGRSRITA 147

[Close]
BLAST of CsaV3_3G043640 vs. NCBI nr
Match: XP_023526192.1 (uncharacterized protein LOC111789743 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023526193.1 uncharacterized protein LOC111789743 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.9 bits (681), Expect = 6.1e-68
Identity = 135/147 (91.84%), Postives = 140/147 (95.24%), Query Frame = 0 

Query: 77  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ 136
           MASKLLIRTG+SLMNRLRLSS HQNN IW SQ+LS GHGV+VTPMLFPSVSKHQ AH LQ
Sbjct: 1   MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQPAHHLQ 60

Query: 137 QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 196
           QNDTESLR+L+SEGIFFPFGLPSLRFFLPDGD SSTQEPMLLFPKRTFQPSTIRRKRNHG
Sbjct: 61  QNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 197 FFARKATKGGRKVIARRIAKGRSRITA 224
           FFARKATKGGRKVIARRIAKGRSRITA
Sbjct: 121 FFARKATKGGRKVIARRIAKGRSRITA 147

[Close]
BLAST of CsaV3_3G043640 vs. TAIR10
Match: AT3G13882.2 (Ribosomal protein L34)

HSP 1 Score: 124.4 bits (311), Expect = 8.8e-29
Identity = 74/154 (48.05%), Postives = 86/154 (55.84%), Query Frame = 0 

Query: 115 GVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLP--------D 174
           G E+ P  FPS+S  Q++   + NDT SL++L   G  +P GLPSL FFLP        D
Sbjct: 48  GQEIPPYFFPSLSNLQSSLISRPNDTASLQELNERGFLYPSGLPSLEFFLPEVYAMQSLD 107

Query: 175 GDASS-------------------------------------TQEPMLLFPKRTFQPSTI 224
              SS                                     + EP+LLFPKRTFQPSTI
Sbjct: 108 ARESSALYCSLALRLLVSAKLYIFAARWYLSNVFVFGNVVDPSSEPLLLFPKRTFQPSTI 167

[Close]
BLAST of CsaV3_3G043640 vs. Swiss-Prot
Match: sp|Q47U32|RL34_COLP3 (50S ribosomal protein L34 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) OX=167879 GN=rpmH PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-09
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 181 KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA 224
           KRTFQPS ++RKRNHGF AR ATK GR VIARR AKGR+R++A
Sbjct: 2   KRTFQPSVLKRKRNHGFRARMATKNGRAVIARRRAKGRARLSA 44

[Close]
BLAST of CsaV3_3G043640 vs. Swiss-Prot
Match: sp|Q15MS4|RL34_PSEA6 (50S ribosomal protein L34 OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) OX=342610 GN=rpmH PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-09
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 181 KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA 224
           KRTFQPS ++RKR+HGF AR ATK GRKVIA R AKGR+R+TA
Sbjct: 2   KRTFQPSNLKRKRSHGFRARMATKNGRKVIANRRAKGRARLTA 44

[Close]
BLAST of CsaV3_3G043640 vs. Swiss-Prot
Match: sp|B0TQH4|RL34_SHEHH (50S ribosomal protein L34 OS=Shewanella halifaxensis (strain HAW-EB4) OX=458817 GN=rpmH PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-09
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 181 KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA 224
           KRTFQPS ++RKR+HGF AR AT GGRKVIARR AKGR+R++A
Sbjct: 3   KRTFQPSNLKRKRSHGFRARMATVGGRKVIARRRAKGRARLSA 45

[Close]
BLAST of CsaV3_3G043640 vs. Swiss-Prot
Match: sp|A3QJT4|RL34_SHELP (50S ribosomal protein L34 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) OX=323850 GN=rpmH PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-09
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 181 KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA 224
           KRTFQPS ++RKR+HGF AR AT GGRKVIARR AKGR+R++A
Sbjct: 3   KRTFQPSNLKRKRSHGFRARMATVGGRKVIARRRAKGRARLSA 45

[Close]
BLAST of CsaV3_3G043640 vs. Swiss-Prot
Match: sp|A8HAI3|RL34_SHEPA (50S ribosomal protein L34 OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) OX=398579 GN=rpmH PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-09
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 181 KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA 224
           KRTFQPS ++RKR+HGF AR AT GGRKVIARR AKGR+R++A
Sbjct: 3   KRTFQPSNLKRKRSHGFRARMATVGGRKVIARRRAKGRARLSA 45

[Close]
BLAST of CsaV3_3G043640 vs. TrEMBL
Match: tr|A0A0A0LIB6|A0A0A0LIB6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G847215 PE=3 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 4.1e-121
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0 

Query: 1   MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHC 60
           MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHC
Sbjct: 1   MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHC 60

Query: 61  HAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTP 120
           HAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTP
Sbjct: 61  HAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTP 120

Query: 121 MLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFP 180
           MLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFP
Sbjct: 121 MLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFP 180

Query: 181 KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA 224
           KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Sbjct: 181 KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA 223

[Close]
BLAST of CsaV3_3G043640 vs. TrEMBL
Match: tr|A0A1S3BHV7|A0A1S3BHV7_CUCME (uncharacterized protein LOC103490028 OS=Cucumis melo OX=3656 GN=LOC103490028 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.1e-73
Identity = 144/147 (97.96%), Postives = 145/147 (98.64%), Query Frame = 0 

Query: 77  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ 136
           MASKLLIRTG+S MNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQ AHPLQ
Sbjct: 1   MASKLLIRTGNSFMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQIAHPLQ 60

Query: 137 QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 196
           QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG
Sbjct: 61  QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 197 FFARKATKGGRKVIARRIAKGRSRITA 224
           FFARKATKGGRKVIARRIAKGRSRITA
Sbjct: 121 FFARKATKGGRKVIARRIAKGRSRITA 147

[Close]
BLAST of CsaV3_3G043640 vs. TrEMBL
Match: tr|M5XB86|M5XB86_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G047000 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.4e-44
Identity = 100/147 (68.03%), Postives = 115/147 (78.23%), Query Frame = 0 

Query: 77  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ 136
           MASK LIRTG+SLMNR+        N     Q +S  HG+E+TP LFPS+S   T+  L 
Sbjct: 1   MASKTLIRTGASLMNRILSKPLLHPNPNSNHQIVS--HGLEITPKLFPSLSNFDTSFRLP 60

Query: 137 QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 196
           QND ESL+++  EG+ +PFGLP L FFLPDGD SS+ EPMLLFPKRTFQPSTIRRKRNHG
Sbjct: 61  QNDAESLKRVSYEGLVYPFGLPYLPFFLPDGDDSSSSEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 197 FFARKATKGGRKVIARRIAKGRSRITA 224
           FFARKATKGGR+VIARRIAKGRSR+TA
Sbjct: 121 FFARKATKGGRRVIARRIAKGRSRVTA 145

[Close]
BLAST of CsaV3_3G043640 vs. TrEMBL
Match: tr|A0A2C9UXQ6|A0A2C9UXQ6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G024800 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.0e-43
Identity = 107/149 (71.81%), Postives = 116/149 (77.85%), Query Frame = 0 

Query: 77  MASKLLIRTGSSLMNRLRLSS--AHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHP 136
           MASK LIRTG+SLMNR  LS+   HQN     SQ LS   G E+TP LFPS+SK QT+  
Sbjct: 1   MASKTLIRTGASLMNRFFLSNPILHQNPNP-NSQLLS--RGFEITPRLFPSLSKFQTSLH 60

Query: 137 LQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRN 196
           L QND  S  +L +E  F P GLPSLRFFLPDGD+SS  EPMLLFPKRTFQPS IRRKRN
Sbjct: 61  LTQNDAHSFNKLSNEEFFHPCGLPSLRFFLPDGDSSS--EPMLLFPKRTFQPSLIRRKRN 120

Query: 197 HGFFARKATKGGRKVIARRIAKGRSRITA 224
           HGFFARKATKGGRKVIARRIAKGRSR+TA
Sbjct: 121 HGFFARKATKGGRKVIARRIAKGRSRVTA 144

[Close]
BLAST of CsaV3_3G043640 vs. TrEMBL
Match: tr|A0A2P5FEJ1|A0A2P5FEJ1_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_081060 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.8e-43
Identity = 102/149 (68.46%), Postives = 115/149 (77.18%), Query Frame = 0 

Query: 77  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQT-AHPL 136
           MASK LIR+GSSL+NRL             S   S GHGV++TP LFPS+S H +    L
Sbjct: 1   MASKTLIRSGSSLVNRLFSKPFLHQKTGSNSPVPSLGHGVDITPKLFPSLSNHHSPLLHL 60

Query: 137 QQNDTES-LRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRN 196
            QND ES +R++ +EG  +P GLPSLRFFLPDGD S ++EPMLLFPKRTFQPSTIRRKRN
Sbjct: 61  HQNDAESTMRKVANEGFVYPSGLPSLRFFLPDGDDSLSKEPMLLFPKRTFQPSTIRRKRN 120

Query: 197 HGFFARKATKGGRKVIARRIAKGRSRITA 224
           HGFFARKATKGGRKVIARRIAKGRSRITA
Sbjct: 121 HGFFARKATKGGRKVIARRIAKGRSRITA 149

The following BLAST results are available for this feature:
BLAST of CsaV3_3G043640 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59796.16.2e-121100.00hypothetical protein Csa_3G847215 [Cucumis sativus][more]
XP_004141160.15.1e-75100.00PREDICTED: uncharacterized protein LOC101210601 [Cucumis sativus][more]
XP_008447614.11.7e-7397.96PREDICTED: uncharacterized protein LOC103490028 [Cucumis melo][more]
XP_022955352.11.2e-6892.52uncharacterized protein LOC111457406 isoform X2 [Cucurbita moschata] >XP_0229553... [more]
XP_023526192.16.1e-6891.84uncharacterized protein LOC111789743 isoform X2 [Cucurbita pepo subsp. pepo] >XP... [more]
BLAST of CsaV3_3G043640 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G13882.28.8e-2948.05Ribosomal protein L34[more]
BLAST of CsaV3_3G043640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q47U32|RL34_COLP32.0e-0974.4250S ribosomal protein L34 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-68... [more]
sp|Q15MS4|RL34_PSEA62.0e-0974.4250S ribosomal protein L34 OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-... [more]
sp|B0TQH4|RL34_SHEHH2.0e-0974.4250S ribosomal protein L34 OS=Shewanella halifaxensis (strain HAW-EB4) OX=458817 ... [more]
sp|A3QJT4|RL34_SHELP2.0e-0974.4250S ribosomal protein L34 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) OX... [more]
sp|A8HAI3|RL34_SHEPA2.0e-0974.4250S ribosomal protein L34 OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) ... [more]
BLAST of CsaV3_3G043640 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LIB6|A0A0A0LIB6_CUCSA4.1e-121100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G847215 PE=3 SV=1[more]
tr|A0A1S3BHV7|A0A1S3BHV7_CUCME1.1e-7397.96uncharacterized protein LOC103490028 OS=Cucumis melo OX=3656 GN=LOC103490028 PE=... [more]
tr|M5XB86|M5XB86_PRUPE1.4e-4468.03Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G047000 PE=3 SV=1[more]
tr|A0A2C9UXQ6|A0A2C9UXQ6_MANES2.0e-4371.81Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G024800 PE=3 SV=... [more]
tr|A0A2P5FEJ1|A0A2P5FEJ1_9ROSA5.8e-4368.46Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_081060 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR020939Ribosomal_L34_CS
IPR000271Ribosomal_L34
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G043640.1CsaV3_3G043640.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000271Ribosomal protein L34PFAMPF00468Ribosomal_L34coord: 181..223
e-value: 4.1E-19
score: 68.2
IPR000271Ribosomal protein L34TIGRFAMTIGR01030TIGR01030coord: 181..223
e-value: 1.1E-16
score: 58.8
IPR000271Ribosomal protein L34PANTHERPTHR14503FAMILY NOT NAMEDcoord: 77..223
IPR000271Ribosomal protein L34PRODOMPD003101coord: 181..218
e-value: 2.0E-13
score: 183.0
IPR000271Ribosomal protein L34HAMAPMF_00391Ribosomal_L34coord: 180..223
score: 13.372
NoneNo IPR availablePANTHERPTHR14503:SF6RIBOSOMAL PROTEIN L34coord: 77..223
IPR020939Ribosomal protein L34, conserved sitePROSITEPS00784RIBOSOMAL_L34coord: 181..200

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G043640CSPI03G41190Wild cucumber (PI 183967)cpicucB145
CsaV3_3G043640Cucsa.340920Cucumber (Gy14) v1cgycucB523
CsaV3_3G043640CmaCh01G000480Cucurbita maxima (Rimu)cmacucB0538
CsaV3_3G043640CmaCh14G012470Cucurbita maxima (Rimu)cmacucB0283
CsaV3_3G043640CmoCh14G012820Cucurbita moschata (Rifu)cmocucB0274
CsaV3_3G043640CmoCh01G000520Cucurbita moschata (Rifu)cmocucB0523
CsaV3_3G043640Cp4.1LG03g14580Cucurbita pepo (Zucchini)cpecucB0751
CsaV3_3G043640CsGy3G038660Cucumber (Gy14) v2cgybcucB117
CsaV3_3G043640Carg06422Silver-seed gourdcarcucB0134
CsaV3_3G043640Cla012589Watermelon (97103) v1cucwmB224
CsaV3_3G043640ClCG07G013950Watermelon (Charleston Gray)cucwcgB262
CsaV3_3G043640Lsi07G005970Bottle gourd (USVL1VR-Ls)cuclsiB254
CsaV3_3G043640MELO3C013069.2Melon (DHL92) v3.6.1cucmedB204
CsaV3_3G043640Cla97C07G140730Watermelon (97103) v2cucwmbB242
CsaV3_3G043640Bhi01G002142Wax gourdcucwgoB293
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G043640Cucumber (Chinese Long) v3cuccucB155
CsaV3_3G043640Silver-seed gourdcarcucB0226
CsaV3_3G043640Silver-seed gourdcarcucB1071
CsaV3_3G043640Cucumber (Gy14) v2cgybcucB327
CsaV3_3G043640Cucumber (Gy14) v1cgycucB546
CsaV3_3G043640Cucurbita maxima (Rimu)cmacucB0426
CsaV3_3G043640Cucurbita maxima (Rimu)cmacucB1056
CsaV3_3G043640Cucurbita moschata (Rifu)cmocucB0421
CsaV3_3G043640Cucurbita moschata (Rifu)cmocucB1038
CsaV3_3G043640Cucurbita pepo (Zucchini)cpecucB0155
CsaV3_3G043640Cucurbita pepo (Zucchini)cpecucB0380
CsaV3_3G043640Cucurbita pepo (Zucchini)cpecucB0695
CsaV3_3G043640Wild cucumber (PI 183967)cpicucB394
CsaV3_3G043640Bottle gourd (USVL1VR-Ls)cuclsiB190
CsaV3_3G043640Melon (DHL92) v3.5.1cucmeB185
CsaV3_3G043640Melon (DHL92) v3.5.1cucmeB211
CsaV3_3G043640Melon (DHL92) v3.6.1cucmedB176
CsaV3_3G043640Watermelon (Charleston Gray)cucwcgB190
CsaV3_3G043640Watermelon (97103) v1cucwmB201
CsaV3_3G043640Watermelon (97103) v2cucwmbB260
CsaV3_3G043640Wax gourdcucwgoB349