CsaV3_3G043640.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G043640.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	50S ribosomal protein L34
Location	chr3 : 35469369 .. 35474983 (+)
Sequence length	672

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGATTTTTTTTCTTCTTTTAAAAAGATGATAAATGAAAAGAAAAAGGAAATGTACCCTACGGTTCCTCGCACTTCTGTTCACACCCCACCCCACCTTCGCCACAGCGCACACCGCCGCTAACCCACAGGGAATTTTCTTTCTTCTCCCTCGATCTCCAGCGGCAGCTACACCAACTTTTCATTTTGCTGCACACTGTCACCAACCTCACTGCCACGCCCACCTTTTATTTCTAAGGGTTAGTGAGCTCGTTCTTTTGCTAATGGCGTCCAAACTTCTTATTCGTACGGGAAGTTCTTTGATGAATCGATTGCGATTAAGCTCAGCGCATCAGAATAACAGGATTTGGGGTAGCCAAGCTCTGTCCCATGGCCATGGCGTTGAAGTTACTCCGATGCTTTTTCCTTCAGTTTCTAAGCACCAGACTGCTCATCCTTTGCAGCAGAATGACACCGAATCGTTGAGGCAGCTCCAATCGGAAGGCATTTTCTTTCCTTTTGGGCTTCCTTCGCTCCGGTTCTTTTTGCCTGACGGTATGCTTCTTTTTCTTTTCTTACTCTGCTTGAAATGGTTTTGAAAGTCAATTTATAGTGTATGTGGATTCTGTTGCGTGTTAATGTTTGGTATGAGTTAGTAGCATGATTTTTCAGGCTGCATCTTTTTGTGGTAGTTTCTAATTTCAATTAATTGACTTATATAATTATAAGTGAAAGTGAGATTGTCAAGTGTTTCTGAGCGGCATATCTTTTTGCCTCTTTTGAGGCTATGAGAAAGTGTTGGGTGCCAAAACTATTAGCCAGTCACTCAAGCTTCAGAAATGGCTGCTCAATTAATCTTGAGAACCTTCTTGGCAGTGCAGATACTTGCCTGCCAGCGTCACTTTGATCATGCTGAAGGATATCTACTTGTTCTGTAAGGATCTGACTTCGGTTCTGGAAAATATTCTGTGAACCATGTTCTGTAAGGATTAGGGCTCCAAACACGAGTAAGCCTGTCTCCATGCAATAAGTTGAAACCCTCTATTAAAGTAAGAATTGAGATCACCTTCATCGTTTCTCTATTGGAGAGAGTGTAAAAAACCAAAGGATAAGGACACAAAACTCCCTGGCCAAACCAAAAATTTAGATACCTGAAGAATTTTGAAGGACAAATGATATAACCAAGGAAACGCATAAATGAATGTCCTTTTCCTAGCCCAATGATCTTCTAAAATATATGTTTCCTTCCTTTCCCCCACAACACAAAGACCAGATGGGAAAAGGAAGGGAGCTCAAAAGAGATCTCTTTCCACAGATGTCGAAGTGTGCCTTTAACACCTTTCTCCGTTCGTTCAAAGGGGTGGGGACTATTTTTACTCATTTTTTTGTGGTATATCTAACCGGAGGGAAATTGGAGAATCTTTATCTACACTTGAAGCAAAGGTGTTTTGTAGCAAAGTAATGATAGGATTGGGAGTAGGTAAAATATGGCAATTGGGAGGGTGATTTATTTGGTGTTTCTCAGGGAGATGTATCAATAAATGAAAGTAGGCAAAATGTGGGAGACTAGTTGGAGGTTTATGGGTAAGATTAGTATAGTTTTAGTAAGGGATTAGGGGTAATTAAGGACCTTGGGCAGTGAGAAGAATTTGGGTAGTGTCCTTTGTAGGACTTTAGGAGAGAAGTAGCCCTCTAAAAAAGGCTATTATATTTTAATTTATTTACCAATTGCAATATAGTTATTGCTAGTGTTTATTAGGGATTGGTAATGGGCTCTGTTGCTTGGATTTCTGAGAACTGTTCCTGTGAAAAAAATTTGCCAGTGTAGTTTGTTCATATGGTATCTATTTTCTGTTTTAGAAAGCTGTTGGAAGAGTGAGTTTTTATCTTCTCATTTTTATTCATTCTCTCATTGATGCCAACTTAAAAATACATCATACAGAGATTAGTGTATAACGGAAGAATCAAGTTAAAGAGCCGGGTACAACAGTCGTACTTATGTTTAGTGTGTTTTTTTTTTTTTTTTTGTCTATTCCTACCAAATTGTTATAAGTATGAATTTGTTCTAGGAGCATCAATTTTGTCCATAGCTTTGGATCTAGAAGTGCTCAATTTTGTGTTAGAGAAGTTTTTGCATGATATTATTGAGGGCTTGGAGGGAGTTGGATGATTCGAATGAAAAAGAGTTTTAAGGTTTCAATCAACGAAGCATAGACGTGTACAGTGAAAGAGAAGAACAAAAATGAATGCCAACTAACAAGGTAATGATAGAAAACGAGAGTAAGAAAAAATCCATTGGATCAAAGATTAGCCACAACTTTGTTTAGAAACTATCAAATCATATGCGCTATTGAATTGTGGCTTGACGACATCAATACGAGCCGAGAACACATAAAATAACTAAAGGGTAAACAAATTGATGAGGCAAAAGAGAAGGAAAGAAGAATGATGCAAGGGGAGGGAGAACCTACTGACAAAGTTATGGTTGGAGAGACAATGTAATGTGCAAGGAAAAGCTATCTGGTGGTTAAATGGTTGGAAAAAATGTGGTGGCGGATGAAAGAAGTAACAAACACAAGTGTTGTTCAAAGCGCCACTGCTAGTTTAATGAGGAGAGCATGAAAAAAATTATAGAGGGACAACCATGAAGGAACCATTGAAGTAAATCATTTTTGGCGACAAGTGTAGGTGTGGCTAAAGAAGAAGTCCCAAAGAAGACAATAGGGTAGGGTTCTTTTTCAAGTGGATATCCATGAACGGTAGCCGGTAGGTTAGAAACTGAAAAGAAAAAGAGTACTTATTTCATAATCATGGGTTAGGTAAGTTATGTTTTTATGGGATGGATTTTAACCATGGAGATGAGGTTGATTCTATTTGCAAAGTCAGAAAACAAGATTGTTTTACAAGCTGGGTTTCGGTTTGGGTTTCCTATTCTGTCTTAAACCCAGGAGTTTACCTACTATGGTGACGTGATATACCATACCCATCAGAAGGAACTACTCTAACTGCATGGTATTTTGCTCTTCACCCACACTTTCGACCATCACTATCGAGCAAGTTAACAATGCTAATCATTACATGTTCGCAAGCAAATGCCATCGATCATCAATACCATCTACCATGTCTGTGCCTCAGCCACTCGCCACCTTCCATTTCTCACGATTGTCGGAGTGCTAACCATCTGTTTTCAATTTTAATTTTGTAAATGTGTATTAAATTATGTTTTTTTTGTTGTAAAAAAATTGTATATCATTCCACTATTGCCTGATTTTGTCTTTATGTTTTCATAAGCACACTTTGAGGACAAGGTCCCTTTAAAAGGTGGGGTGATGTGAGAGATACTATTTAGGGGTATATGGGCAAGATTAGCATGATATTAGTAATAATTAGCAAGGGGTGTCTTGATTATAAATAGAGTGTGTTAAGGATCTTAGACGTTATGAAGAATTTAGGTAGTGTCCTTTGTGGAACTTTGAGAGACAAGTAACTCTCTTCTATTACATTGTAATTTTTTTACCAATATTGCAGTATAGTATAGTAATCTTTACTGTTCTTTTGTAGTTTTTGTGTCCGGGTACTAAACATTGTGTTATTTTGAGTTGCTTATGAGGGGAGGCCGTAGGTGTCAAAGCTCTCATTTTCAGCCTTTCTGGGAGAAATCTCTCTTTAGCATTCTTGATGGAGGTGCACTTCAAGTTGCACACCCGAGTAAATAAATACTTAGTTTTGGTAGTTTGTGATTATCTTAACCTTCCTGTGACTAGCTGTCCGAGTTATGATGTATGGATTCCCTTCATTAAATGGAGCTTTGTAGATAACAATTTTGTGGACTCGGATGATACTTTAATCTTCATTGCTTTTTTGTATTATTATTTTTTCAAAATTAAGGCATAATTCTTTGTTTCTGCAGGAGATGCTTCTTCAACACAAGAACCGATGCTCTTATTTCCTAAAAGGACATTTCAACCTAGCACCATCAGGCGAAAAAGGAATCATGGTTTTTTTGCTCGGTATCTCTCCATTGGCTTTTCTGCATGTATATTCTTTTATGTAATGTTTTTAGAAAGGACTATCTATAGTTTGCAAATAAACATTATTCTTTCCTTAAGCATGCCCTATTAAGTTTTGTGGTAAAGTTCTTTTTTCGTGGAAGAAACATGAGGAACTTCATTAATGAATGAAGTGAAAAAAATGGGTGCAAAAACACTCCCAATAGGCATAGGTGGATTATCACAAAACTGGATAATCCACCTATCAGAAAATATGCCTGGAAATTGGAATGTGTATACCAACCAACCACTACGCTTAGAAACTCACGCATGTTTTCAATTATGAAGCTTGGAGTCAATTCTTACATTAGCCAGCGGCCAAAAGATTGAACTACTCTTTTGATTTTTACCCAATGGGAAACAAAAATAGTTGGAAGGACAAGTACCTAGCTTACAACCAAATTTCCCGTTGGAAAAAGAAAAATCTGACTTATTATCATGAATGCCAACATTTCATGCCATAATTTACTTTCAACCCTGAAGTGGCATCATAGGTTGTCCAACTTCCTTAATGTAACTAGTTTATCTGTATTGGTTGTTTGGAGTAAAGAAAAAAAAGTTACCACCCTACAAAAATTAGTTTGGCTGGCTAGATTAGCTTTAGAAGGGAATGTAACAAATCATTACATAAGTGCATTCTTAACCAAAAAAAAAAAGACTCATAATGTGCATTAGAAATCACTCGTTTATCTTTGAACAGCAAAGCAACCAAGGGAGGACGGAAAGTTATTGCTCGAAGGATTGCAAAGGGGCGCTCAAGAATAACTGCATAATGTTCATCTCAAGTCAGGTGCAATTGAATCGCCCTACCAATATCTTATTGTGTTAGTTTTTTTAAATTTAAAATTAACTCAATAGAATGGTATCGCTGGCTGAATAACCCCTTTTGTCTTTCTTCTTAGGCCTCGGAATACAGTCTGTATAAACTTCTCTGTTTTTAGAATTACCATGCATTAAACACCTTCCATATTGAAGTTTAAGTTACTCTTAATTTTTATTTCTTTCTTAACTTAGCTAGAGAATTGTTTACTTTTGGTTCATGGTGAGTGTTGATACTGGCTCCTGAGCAAATAAACAAACTCAAGTCCGAAAGTTGGGAAAAGGAAGAGGATGTGATTTTTTAAGTCAGTTTAGGACTAAAATCATTACTTATCCATATGTTCTTTTGTTTTAATATTATTTTCTCCCACAAAAATAAATTATTAATAGGCCAAATTGCAAAAATCACCTTTAGTACTTGTAAAGTTGCAATTACATGTCAAATTCTTAAACTTGTACAATTGTAAAAATCTTAACAATCTTTGAAGGTTGCTAGTCAATTTTCATCATTTGGGGCTTCAATTTTTCAAACTAGGGTAAGTTTAAAAGTTCAATTTTCACCATTTTAAAATGTGGGTCTCAATTGTACACTTTCAAGTTAGAAATTGAAAGTACCACCATAATTTGGCTTTTCTTTTATGTTATTAGGTCTTGTGGATATTATTTTGGAGTTTGTATATTTGGATTCATTTTGTTGTAGTTTTATACTTCTAAACATCATTCATTTTAGTTACTATACTTTTCGAAATATTTGGTTTACCTTTATACTTC

mRNA sequence

ATGAAAAGAAAAAGGAAATGTACCCTACGGTTCCTCGCACTTCTGTTCACACCCCACCCCACCTTCGCCACAGCGCACACCGCCGCTAACCCACAGGGAATTTTCTTTCTTCTCCCTCGATCTCCAGCGGCAGCTACACCAACTTTTCATTTTGCTGCACACTGTCACCAACCTCACTGCCACGCCCACCTTTTATTTCTAAGGGTTAGTGAGCTCGTTCTTTTGCTAATGGCGTCCAAACTTCTTATTCGTACGGGAAGTTCTTTGATGAATCGATTGCGATTAAGCTCAGCGCATCAGAATAACAGGATTTGGGGTAGCCAAGCTCTGTCCCATGGCCATGGCGTTGAAGTTACTCCGATGCTTTTTCCTTCAGTTTCTAAGCACCAGACTGCTCATCCTTTGCAGCAGAATGACACCGAATCGTTGAGGCAGCTCCAATCGGAAGGCATTTTCTTTCCTTTTGGGCTTCCTTCGCTCCGGTTCTTTTTGCCTGACGGAGATGCTTCTTCAACACAAGAACCGATGCTCTTATTTCCTAAAAGGACATTTCAACCTAGCACCATCAGGCGAAAAAGGAATCATGGTTTTTTTGCTCGCAAAGCAACCAAGGGAGGACGGAAAGTTATTGCTCGAAGGATTGCAAAGGGGCGCTCAAGAATAACTGCATAA

Coding sequence (CDS)

ATGAAAAGAAAAAGGAAATGTACCCTACGGTTCCTCGCACTTCTGTTCACACCCCACCCCACCTTCGCCACAGCGCACACCGCCGCTAACCCACAGGGAATTTTCTTTCTTCTCCCTCGATCTCCAGCGGCAGCTACACCAACTTTTCATTTTGCTGCACACTGTCACCAACCTCACTGCCACGCCCACCTTTTATTTCTAAGGGTTAGTGAGCTCGTTCTTTTGCTAATGGCGTCCAAACTTCTTATTCGTACGGGAAGTTCTTTGATGAATCGATTGCGATTAAGCTCAGCGCATCAGAATAACAGGATTTGGGGTAGCCAAGCTCTGTCCCATGGCCATGGCGTTGAAGTTACTCCGATGCTTTTTCCTTCAGTTTCTAAGCACCAGACTGCTCATCCTTTGCAGCAGAATGACACCGAATCGTTGAGGCAGCTCCAATCGGAAGGCATTTTCTTTCCTTTTGGGCTTCCTTCGCTCCGGTTCTTTTTGCCTGACGGAGATGCTTCTTCAACACAAGAACCGATGCTCTTATTTCCTAAAAGGACATTTCAACCTAGCACCATCAGGCGAAAAAGGAATCATGGTTTTTTTGCTCGCAAAGCAACCAAGGGAGGACGGAAAGTTATTGCTCGAAGGATTGCAAAGGGGCGCTCAAGAATAACTGCATAA

Protein sequence

MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHCHAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

Homology

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BLAST of CsaV3_3G043640.1 vs. NCBI nr
Match: KGN59796.1 (hypothetical protein Csa_3G847215 [Cucumis sativus])

HSP 1 Score: 443.0 bits (1138), Expect = 6.2e-121
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHC 60
           MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHC
Sbjct: 1   MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHC 60

Query: 61  HAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTP 120
           HAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTP
Sbjct: 61  HAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTP 120

Query: 121 MLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFP 180
           MLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFP
Sbjct: 121 MLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFP 180

Query: 181 KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA 224
           KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Sbjct: 181 KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA 223

[Close]

BLAST of CsaV3_3G043640.1 vs. NCBI nr
Match: XP_004141160.1 (PREDICTED: uncharacterized protein LOC101210601 [Cucumis sativus])

HSP 1 Score: 290.4 bits (742), Expect = 5.1e-75
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 77  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ 136
           MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ
Sbjct: 1   MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ 60

Query: 137 QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 196
           QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG
Sbjct: 61  QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 197 FFARKATKGGRKVIARRIAKGRSRITA 224
           FFARKATKGGRKVIARRIAKGRSRITA
Sbjct: 121 FFARKATKGGRKVIARRIAKGRSRITA 147

[Close]

BLAST of CsaV3_3G043640.1 vs. NCBI nr
Match: XP_008447614.1 (PREDICTED: uncharacterized protein LOC103490028 [Cucumis melo])

HSP 1 Score: 285.4 bits (729), Expect = 1.7e-73
Identity = 144/147 (97.96%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 77  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ 136
           MASKLLIRTG+S MNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQ AHPLQ
Sbjct: 1   MASKLLIRTGNSFMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQIAHPLQ 60

Query: 137 QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 196
           QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG
Sbjct: 61  QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 197 FFARKATKGGRKVIARRIAKGRSRITA 224
           FFARKATKGGRKVIARRIAKGRSRITA
Sbjct: 121 FFARKATKGGRKVIARRIAKGRSRITA 147

[Close]

BLAST of CsaV3_3G043640.1 vs. NCBI nr
Match: XP_022955352.1 (uncharacterized protein LOC111457406 isoform X2 [Cucurbita moschata] >XP_022955353.1 uncharacterized protein LOC111457406 isoform X2 [Cucurbita moschata])

HSP 1 Score: 269.2 bits (687), Expect = 1.2e-68
Identity = 136/147 (92.52%), Postives = 141/147 (95.92%), Query Frame = 0


Query: 77  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ 136
           MASKLLIRTG+SLMNRLRLSS HQNN IW SQ+LS GHGV+VTPMLFPSVSKHQTAH LQ
Sbjct: 1   MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQ 60

Query: 137 QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 196
           QNDTESLR+L+SEGIFFPFGLPSLRFFLPDGD SSTQEPMLLFPKRTFQPSTIRRKRNHG
Sbjct: 61  QNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 197 FFARKATKGGRKVIARRIAKGRSRITA 224
           FFARKATKGGRKVIARRIAKGRSRITA
Sbjct: 121 FFARKATKGGRKVIARRIAKGRSRITA 147

[Close]

BLAST of CsaV3_3G043640.1 vs. NCBI nr
Match: XP_023526192.1 (uncharacterized protein LOC111789743 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023526193.1 uncharacterized protein LOC111789743 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.9 bits (681), Expect = 6.1e-68
Identity = 135/147 (91.84%), Postives = 140/147 (95.24%), Query Frame = 0


Query: 77  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ 136
           MASKLLIRTG+SLMNRLRLSS HQNN IW SQ+LS GHGV+VTPMLFPSVSKHQ AH LQ
Sbjct: 1   MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQPAHHLQ 60

Query: 137 QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 196
           QNDTESLR+L+SEGIFFPFGLPSLRFFLPDGD SSTQEPMLLFPKRTFQPSTIRRKRNHG
Sbjct: 61  QNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 197 FFARKATKGGRKVIARRIAKGRSRITA 224
           FFARKATKGGRKVIARRIAKGRSRITA
Sbjct: 121 FFARKATKGGRKVIARRIAKGRSRITA 147

[Close]

BLAST of CsaV3_3G043640.1 vs. TAIR10
Match: AT3G13882.2 (Ribosomal protein L34)

HSP 1 Score: 124.4 bits (311), Expect = 8.8e-29
Identity = 74/154 (48.05%), Postives = 86/154 (55.84%), Query Frame = 0


Query: 115 GVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLP--------D 174
           G E+ P  FPS+S  Q++   + NDT SL++L   G  +P GLPSL FFLP        D
Sbjct: 48  GQEIPPYFFPSLSNLQSSLISRPNDTASLQELNERGFLYPSGLPSLEFFLPEVYAMQSLD 107

Query: 175 GDASS-------------------------------------TQEPMLLFPKRTFQPSTI 224
              SS                                     + EP+LLFPKRTFQPSTI
Sbjct: 108 ARESSALYCSLALRLLVSAKLYIFAARWYLSNVFVFGNVVDPSSEPLLLFPKRTFQPSTI 167

[Close]

BLAST of CsaV3_3G043640.1 vs. Swiss-Prot
Match: sp|Q47U32|RL34_COLP3 (50S ribosomal protein L34 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) OX=167879 GN=rpmH PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-09
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 181 KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA 224
           KRTFQPS ++RKRNHGF AR ATK GR VIARR AKGR+R++A
Sbjct: 2   KRTFQPSVLKRKRNHGFRARMATKNGRAVIARRRAKGRARLSA 44

[Close]

BLAST of CsaV3_3G043640.1 vs. Swiss-Prot
Match: sp|Q15MS4|RL34_PSEA6 (50S ribosomal protein L34 OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) OX=342610 GN=rpmH PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-09
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 181 KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA 224
           KRTFQPS ++RKR+HGF AR ATK GRKVIA R AKGR+R+TA
Sbjct: 2   KRTFQPSNLKRKRSHGFRARMATKNGRKVIANRRAKGRARLTA 44

[Close]

BLAST of CsaV3_3G043640.1 vs. Swiss-Prot
Match: sp|B0TQH4|RL34_SHEHH (50S ribosomal protein L34 OS=Shewanella halifaxensis (strain HAW-EB4) OX=458817 GN=rpmH PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-09
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 181 KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA 224
           KRTFQPS ++RKR+HGF AR AT GGRKVIARR AKGR+R++A
Sbjct: 3   KRTFQPSNLKRKRSHGFRARMATVGGRKVIARRRAKGRARLSA 45

[Close]

BLAST of CsaV3_3G043640.1 vs. Swiss-Prot
Match: sp|A3QJT4|RL34_SHELP (50S ribosomal protein L34 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) OX=323850 GN=rpmH PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-09
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 181 KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA 224
           KRTFQPS ++RKR+HGF AR AT GGRKVIARR AKGR+R++A
Sbjct: 3   KRTFQPSNLKRKRSHGFRARMATVGGRKVIARRRAKGRARLSA 45

[Close]

BLAST of CsaV3_3G043640.1 vs. Swiss-Prot
Match: sp|A8HAI3|RL34_SHEPA (50S ribosomal protein L34 OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) OX=398579 GN=rpmH PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-09
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 181 KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA 224
           KRTFQPS ++RKR+HGF AR AT GGRKVIARR AKGR+R++A
Sbjct: 3   KRTFQPSNLKRKRSHGFRARMATVGGRKVIARRRAKGRARLSA 45

[Close]

BLAST of CsaV3_3G043640.1 vs. TrEMBL
Match: tr|A0A0A0LIB6|A0A0A0LIB6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G847215 PE=3 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 4.1e-121
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHC 60
           MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHC
Sbjct: 1   MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHC 60

Query: 61  HAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTP 120
           HAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTP
Sbjct: 61  HAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTP 120

Query: 121 MLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFP 180
           MLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFP
Sbjct: 121 MLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFP 180

Query: 181 KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA 224
           KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Sbjct: 181 KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA 223

[Close]

BLAST of CsaV3_3G043640.1 vs. TrEMBL
Match: tr|A0A1S3BHV7|A0A1S3BHV7_CUCME (uncharacterized protein LOC103490028 OS=Cucumis melo OX=3656 GN=LOC103490028 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.1e-73
Identity = 144/147 (97.96%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 77  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ 136
           MASKLLIRTG+S MNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQ AHPLQ
Sbjct: 1   MASKLLIRTGNSFMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQIAHPLQ 60

Query: 137 QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 196
           QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG
Sbjct: 61  QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 197 FFARKATKGGRKVIARRIAKGRSRITA 224
           FFARKATKGGRKVIARRIAKGRSRITA
Sbjct: 121 FFARKATKGGRKVIARRIAKGRSRITA 147

[Close]

BLAST of CsaV3_3G043640.1 vs. TrEMBL
Match: tr|M5XB86|M5XB86_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G047000 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.4e-44
Identity = 100/147 (68.03%), Postives = 115/147 (78.23%), Query Frame = 0


Query: 77  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ 136
           MASK LIRTG+SLMNR+        N     Q +S  HG+E+TP LFPS+S   T+  L 
Sbjct: 1   MASKTLIRTGASLMNRILSKPLLHPNPNSNHQIVS--HGLEITPKLFPSLSNFDTSFRLP 60

Query: 137 QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 196
           QND ESL+++  EG+ +PFGLP L FFLPDGD SS+ EPMLLFPKRTFQPSTIRRKRNHG
Sbjct: 61  QNDAESLKRVSYEGLVYPFGLPYLPFFLPDGDDSSSSEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 197 FFARKATKGGRKVIARRIAKGRSRITA 224
           FFARKATKGGR+VIARRIAKGRSR+TA
Sbjct: 121 FFARKATKGGRRVIARRIAKGRSRVTA 145

[Close]

BLAST of CsaV3_3G043640.1 vs. TrEMBL
Match: tr|A0A2C9UXQ6|A0A2C9UXQ6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G024800 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.0e-43
Identity = 107/149 (71.81%), Postives = 116/149 (77.85%), Query Frame = 0


Query: 77  MASKLLIRTGSSLMNRLRLSS--AHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHP 136
           MASK LIRTG+SLMNR  LS+   HQN     SQ LS   G E+TP LFPS+SK QT+  
Sbjct: 1   MASKTLIRTGASLMNRFFLSNPILHQNPNP-NSQLLS--RGFEITPRLFPSLSKFQTSLH 60

Query: 137 LQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRN 196
           L QND  S  +L +E  F P GLPSLRFFLPDGD+SS  EPMLLFPKRTFQPS IRRKRN
Sbjct: 61  LTQNDAHSFNKLSNEEFFHPCGLPSLRFFLPDGDSSS--EPMLLFPKRTFQPSLIRRKRN 120

Query: 197 HGFFARKATKGGRKVIARRIAKGRSRITA 224
           HGFFARKATKGGRKVIARRIAKGRSR+TA
Sbjct: 121 HGFFARKATKGGRKVIARRIAKGRSRVTA 144

[Close]

BLAST of CsaV3_3G043640.1 vs. TrEMBL
Match: tr|A0A2P5FEJ1|A0A2P5FEJ1_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_081060 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.8e-43
Identity = 102/149 (68.46%), Postives = 115/149 (77.18%), Query Frame = 0


Query: 77  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQT-AHPL 136
           MASK LIR+GSSL+NRL             S   S GHGV++TP LFPS+S H +    L
Sbjct: 1   MASKTLIRSGSSLVNRLFSKPFLHQKTGSNSPVPSLGHGVDITPKLFPSLSNHHSPLLHL 60

Query: 137 QQNDTES-LRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRN 196
            QND ES +R++ +EG  +P GLPSLRFFLPDGD S ++EPMLLFPKRTFQPSTIRRKRN
Sbjct: 61  HQNDAESTMRKVANEGFVYPSGLPSLRFFLPDGDDSLSKEPMLLFPKRTFQPSTIRRKRN 120

Query: 197 HGFFARKATKGGRKVIARRIAKGRSRITA 224
           HGFFARKATKGGRKVIARRIAKGRSRITA
Sbjct: 121 HGFFARKATKGGRKVIARRIAKGRSRITA 149

The following BLAST results are available for this feature:

BLAST of CsaV3_3G043640.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59796.1	6.2e-121	100.00	hypothetical protein Csa_3G847215 [Cucumis sativus]	[more]
XP_004141160.1	5.1e-75	100.00	PREDICTED: uncharacterized protein LOC101210601 [Cucumis sativus]	[more]
XP_008447614.1	1.7e-73	97.96	PREDICTED: uncharacterized protein LOC103490028 [Cucumis melo]	[more]
XP_022955352.1	1.2e-68	92.52	uncharacterized protein LOC111457406 isoform X2 [Cucurbita moschata] >XP_0229553...	[more]
XP_023526192.1	6.1e-68	91.84	uncharacterized protein LOC111789743 isoform X2 [Cucurbita pepo subsp. pepo] >XP...	[more]

BLAST of CsaV3_3G043640.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13882.2	8.8e-29	48.05	Ribosomal protein L34	[more]

BLAST of CsaV3_3G043640.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q47U32\|RL34_COLP3	2.0e-09	74.42	50S ribosomal protein L34 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-68...	[more]
sp\|Q15MS4\|RL34_PSEA6	2.0e-09	74.42	50S ribosomal protein L34 OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-...	[more]
sp\|B0TQH4\|RL34_SHEHH	2.0e-09	74.42	50S ribosomal protein L34 OS=Shewanella halifaxensis (strain HAW-EB4) OX=458817 ...	[more]
sp\|A3QJT4\|RL34_SHELP	2.0e-09	74.42	50S ribosomal protein L34 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) OX...	[more]
sp\|A8HAI3\|RL34_SHEPA	2.0e-09	74.42	50S ribosomal protein L34 OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) ...	[more]

BLAST of CsaV3_3G043640.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LIB6\|A0A0A0LIB6_CUCSA	4.1e-121	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G847215 PE=3 SV=1	[more]
tr\|A0A1S3BHV7\|A0A1S3BHV7_CUCME	1.1e-73	97.96	uncharacterized protein LOC103490028 OS=Cucumis melo OX=3656 GN=LOC103490028 PE=...	[more]
tr\|M5XB86\|M5XB86_PRUPE	1.4e-44	68.03	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G047000 PE=3 SV=1	[more]
tr\|A0A2C9UXQ6\|A0A2C9UXQ6_MANES	2.0e-43	71.81	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G024800 PE=3 SV=...	[more]
tr\|A0A2P5FEJ1\|A0A2P5FEJ1_9ROSA	5.8e-43	68.46	Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_081060 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR020939	Ribosomal_L34_CS
IPR000271	Ribosomal_L34

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_3G043640	CsaV3_3G043640	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G043640.1	CsaV3_3G043640.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G043640.1.exon1	CsaV3_3G043640.1.exon1	exon
CsaV3_3G043640.1.exon2	CsaV3_3G043640.1.exon2	exon
CsaV3_3G043640.1.exon3	CsaV3_3G043640.1.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G043640.1.cds1	CsaV3_3G043640.1.cds1	CDS
CsaV3_3G043640.1.cds2	CsaV3_3G043640.1.cds2	CDS
CsaV3_3G043640.1.cds3	CsaV3_3G043640.1.cds3	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000271	Ribosomal protein L34	PFAM	PF00468	Ribosomal_L34	coord: 181..223 e-value: 4.1E-19 score: 68.2
IPR000271	Ribosomal protein L34	TIGRFAM	TIGR01030	TIGR01030	coord: 181..223 e-value: 1.1E-16 score: 58.8
IPR000271	Ribosomal protein L34	PANTHER	PTHR14503	FAMILY NOT NAMED	coord: 77..223
IPR000271	Ribosomal protein L34	PRODOM	PD003101		coord: 181..218 e-value: 2.0E-13 score: 183.0
IPR000271	Ribosomal protein L34	HAMAP	MF_00391	Ribosomal_L34	coord: 180..223 score: 13.372
None	No IPR available	PANTHER	PTHR14503:SF6	RIBOSOMAL PROTEIN L34	coord: 77..223
IPR020939	Ribosomal protein L34, conserved site	PROSITE	PS00784	RIBOSOMAL_L34	coord: 181..200