Cucsa.340920 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.340920
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description50S ribosomal protein L34
Locationscaffold03356 : 3294343 .. 3299285 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGAAAAAGGAAATGTACCCTACGGTTCCTCGCACTTCTGTTCACACCCCACCCCACCTTCGCCACAGCGCACACCGCCGCTAACCCACAGGGAATTTTCTTTCTTCTCCCTCGATCTCCAGCGGCAGCTACACCAACTTTTCATTTTGCTGCACACTGTCACCAACCTCACTGCCACGCCCACCTTTTATTTCTAAGGGTTAGTGAGCTCGTTCTTTTGCTAATGGCGTCCAAACTTCTTATTCGTACGGGAAGTTCTTTGATGAATCGATTGCGATTAAGCTCAGCGCATCAGAATAACAGGATTTGGGGTAGCCAAGCTCTGTCCCATGGCCATGGCGTTGAAGTTACTCCGATGCTTTttCCTTCAGTTTCTAAGCACCAGACTGCTCATCCTTTGCAGCAGAATGACACCGAATCGTTGAGGCAGCTCCAATCGGAAGGCATTTTCTTTCCTTTTGGGCTTCCTTCGCTCCGGTtCTTTTtGCCTGACGGTATGCTTCTTTTtCTTTtCTTACTCTGCTTGAAATGGTTTTGAAAGTCAATTTATAGTGTATGTGGATTCTGTTGCGTGTTAATGTTTGGTATGAGTTAGTAGCATGATTTTTCAGGCTGCATCTTTTTGTGGTAGTTTCTAATTTCAATTAATTGACTTATATAATTATAAGTGAAAGTGAGATTGTCAAGTGTTTCTGAGCGGCATATCTTTTTGCCTCTTTTGAGGCTATGAGAAAGTGTTGGGTGCCAAAACTATTAGCCAGTCACTCAAGCTTCAGAAATGGCTGCTCAATTAATCTTGAGAACCTTCTTGGCAGTGCAGATACTTGCCTGCCAGCGTCACTTTGATCATGCTGAAGGATATCTACTTGTTCTGTAAGGATCTGACTTCGGTTCTGGAAAATATTCTGTGAACCATGTTCTGTAAGGATTAGGGCTCCAAACACGAGTAAGCCTGTCTCCATGCAATAAGTTGAAACCCTCTATTAAAGTAAGAATTGAGATCACCTTCATCGTTTCTCTATTGGAGAGAGTGTAAAAAACCAAAGGATAAGGACACAAAACTCCCTGGCCAAACCAAAAATTTAGATACCTGAAGAATTTTGAAGGACAAATGATATAACCAAGGAAACGCATAAATGAATGTCCTTTTCCTAGCCCAATGATCTTCTAAAATATATGTTTCCTTCCTTTCCCCCACAACACAAAGACCAGATGGGAAAAGGAAGGGAGCTCAAAAGAGATCTCTTTCCACAGATGTCGAAGTGTGCCTTTAACACCTTTCTCCGTTCGTTCAAAGGGGTGGGGACTATTTTTACTCATTTTTTTGTGGTATATCTAACCGGAGGGAAATTGGAGAATCTTTATCTACACTTGAAGCAAAGGTGTTTTGTAGCAAAGTAATGATAGGATTGGGAGTAGGTAAAATATGGCAATTGGGAGGGTGATTTATTTGGTGTTTCTCAGGGAGATGTATCAATAAATGAAAGTAGGCAAAATGTGGGAGACTAGTTGGAGGTTTATGGGTAAGATTAGTATAGTTTTAGTAAGGGATTAGGGGTAATTAAGGACCTTGGGCAGTGAGAAGAATTTGGGTAGTGTCCTTTGTAGGACTTTAGGAGAGAAGTAGCCCTCTAAAAAAGGCTATTATATTTTAATTTATTTACCAATTGCAATATAGTTATTGCTAGTGTTTATTAGGGATTGGTAATGGGCTCTGTTGCTTGGATTTCTGAGAACTGTTCCTGTGAAAAAAATTTGCCAGTGTAGTTTGTTCATATGGTATCTATTTTCTGTTTTAGAAAGCTGTTGGAAGAGTGAGTTTTTATCTTCTCATTTTTATTCATTCTCTCATTGATGCCAACTTAAAAaTACATCATACAGAGATTAGTGTATAACGGAAGAATCAAGTTAAAGAGCCGGGTACAACAGTCGTACTTATGTTTAGTGTGTTTTTTtttTTtttGTCTATTCCTACCAAATTGTTATAAGTATGAATTTGTTCTAGGAGCATCAATTTTGTCCATAGCTTTGGATCTAGAAGTGCTCAATTTTGTGTTAGAGAAGTTTTTGCATGATATTATTGAGGGCTTGGAGGGAGTTGGATGATTCGAATGAAAAAGAGTTTTAAGGTTTCAATCAACGAAGCATAGACGTGTACAGTGAAAGAGAAGAACAAAAATGAATGCCAACTAACAAGGTAATGATAGAAAACGAGAGTAAGAAAAAaTCCATTGGATCAAAGATTAGCCACAACTTTGTTTAGAAACTATCAAATCATATGCGCTATTGAATTGTGGCTTGACGACATCAATACGAGCCGAGAACACATAAAATAACTAAAGGGTAAACAAATTGATGAGGCAAAAGAGAAGGAAAGAAGAATGATGCAAGGGGAGGGAGAACCTACTGACAAAGTTATGGTTGGAGAGACAATGTAATGTGCAAGGAAAAGCTATCTGGTGGTTAAATGGTTGGAAAAAATGTGGTGGCGGATGAAAGAAGTAACAAACACAAGTGTTGTTCAAAGCGCCACTGCTAGTTTAATGAGGAGAGCATGAAAAAAaTTATAGAGGGACAACCATGAAGGAACCATTGAAGTAAATCATTTTTGGCGACAAGTGTAGGTGTGGCTAAAGAAGAAGTCCCAAAGAAGACAATAGGGTAGGGTTCTTTTTCAAGTGGATATCCATGAACGGTAGCCGGTAGGTTAGAAACTGAAAAGAAAAAGAGTACTTATTTCATAATCATGGGTTAGGTAAGTTATGTTTTTATGGGATGGATTTTAACCATGGAGATGAGGTTGATTCTATTTGCAAAGTCAGAAAACAAGATTGTTTTACAAGCTGGGTTTCGGTTTGGGTTTCCTATTCTGTCTTAAACCCAGGAGTTTACCTACTATGGTGACGTGATATACCATACCCATCAGAAGGAACTACTCTAACTGCATGGTATTTTGCTCTTCACCCACACTTTCGACCATCACTATCGAGCAAGTTAACAATGCTAATCATTACATGTTCGCAAGCAAATGCCATCGATCATCAATACCATCTACCATGTCTGTGCCTCAGCCACTCGCCACCTTCCATTTCTCACGATTGTCGGAGTGCTAACCATCTGTTTTCAATTTTAATTTTGTAAATGTGTATTAAATTATGTTTTTTTtGTTGTAAAAAAaTTGTATATCATTCCACTATTGCCTGATTTTGTCTTTATGTTTTCATAAGCACACTTTGAGGACAAGGTCCCTTTAAAAGGTGGGGTGATGTGAGAGATACTATTTAGGGGTATATGGGCAAGATTAGCATGATATTAGTAATAATTAGCAAGGGGTGTCTTGATTATAAATAGAGTGTGTTAAGGATCTTAGACGTTATGAAGAATTTAGGTAGTGTCCTTTGTGGAACTTTGAGAGACAAGTAACTCTCTTCTATTACATTGTAATTTTTTtACCAATATTGCAGTATAGTATAGTAATCTTTACTGTTCTTTTGTAGTTTTTGTGTCCGGGTACTAAACATTGTGTTATTTTGAGTTGCTTATGAGGGGAGGCCGTAGGTGTCAAAGCTCTCATTTTCAGCCTTTCTGGGAGAAATCTCTCTTTAGCATTCTTGATGGAGGTGCACTTCAAGTTGCACACCCGAGTAAATAAATACTTAGTTTTGGTAGTTTGTGATTATCTTAACCTTCCTGTGACTAGCTGTCCGAGTTATGATGTATGGATTCCCTTCATTAAATGGAGCTTTGTAGATAACAATTTTGTGGACTCGGATGATACTTTAATCTTCATTGCTTTTTTGTATTATTATTTTTtCAAAATTAAGGCATAATTCTTTGTTTCTGCAGGAGATGCTTCTTCAACACAAGAACCGATGCTCTTATTTCCTAAAAGGACATTTCAACCTAGCACCATCAGGCGAAAAAGGAATCATGGTTTTTTtGCTCGGTATCTCTCCATTGGCTTTTCTGCATGTATATTCTTTTATGTAATGTTTTTAGAAAGGACTATCTATAGTTTGCAAATAAACATTATTCTTTCCTTAAGCATGCCCTATTAAGTTTTGTGGTAAAGTTCTTTTTTCGTGGAAGAAACATGAGGAACTTCATTAATGAATGAAGTGAAAAAAATGGGTGCAAAAACACTCCCAATAGGCATAGGTGGATTATCACAAAACTGGATAATCCACCTATCAGAAAATATGCCTGGAAATTGGAATGTGTATACCAACCAACCACTACGCTTAGAAACTCACGCATGTTTTCAATTATGAAGCTTGGAGTCAATTCTTACATTAGCCAGCGGCCAAAAGATTGAACTACTCTTTTGATTTTTACCCAATGGGAAACAAAAATAGTTGGAAGGACAAGTACCTAGCTTACAACCAAATTTCCCGTTGGAAAAAGAAAAATCTGACTTATTATCATGAATGCCAACATTTCATGCCATAATTTACTTTCAACCCTGAAGTGGCATCATAGGTTGTCCAACTTCCTTAATGTAACTAGTTTATCTGTATTGGTTGTTTGGAGTAAAGAAAAAAAaGTTACCACCCTACAAAAATTAGTTTGGCTGGCTAGATTAGCTTTAGAAGGGAATGTAACAAATCATTACATAAGTGCATTCTTAACCAAAAaAAAAaGACTCATAATGTGCATTAGAAATCACTCGTTTATCTTTGAACAGCAAAGCAACCAAGGGAGGACGGAAAGTTATTGCTCGAAGGATTGCAAAGGGGCGCTCAAGAATAACTGCATAATGTTCATCTCAAGTCAGGTGCAATTGAATCGCCCTACCAATATCTTATTGTGTTAGTTTTTTtAAATTTAAAATTAACTCAATAGAATGGTATCGCTGGCTGAATAACCCCTTTTGTCTTTCTTCTTAGGCCTCGGAATACAGTCTGTATAAACTTCTCTGTTTTTA

mRNA sequence

ATGAAAAGAAAAAGGAAATGTACCCTACGGTTCCTCGCACTTCTGTTCACACCCCACCCCACCTTCGCCACAGCGCACACCGCCGCTAACCCACAGGGAATTTTCTTTCTTCTCCCTCGATCTCCAGCGGCAGCTACACCAACTTTTCATTTTGCTGCACACTGTCACCAACCTCACTGCCACGCCCACCTTTTATTTCTAAGGGTTAGTGAGCTCGTTCTTTTGCTAATGGCGTCCAAACTTCTTATTCGTACGGGAAGTTCTTTGATGAATCGATTGCGATTAAGCTCAGCGCATCAGAATAACAGGATTTGGGGTAGCCAAGCTCTGTCCCATGGCCATGGCGTTGAAGTTACTCCGATGCTTTTTCCTTCAGTTTCTAAGCACCAGACTGCTCATCCTTTGCAGCAGAATGACACCGAATCGTTGAGGCAGCTCCAATCGGAAGGCATTTTCTTTCCTTTTGGGCTTCCTTCGCTCCGGTTCTTTTTGCCTGACGGAGATGCTTCTTCAACACAAGAACCGATGCTCTTATTTCCTAAAAGGACATTTCAACCTAGCACCATCAGGCGAAAAAGGAATCATGGTTTTTTTGCTCGAAATCACTCGTTTATCTTTGAACAGCAAAGCAACCAAGGGAGGACGGAAAGTTATTGCTCGAAGGATTGCAAAGGGGCGCTCAAGAATAACTGCATAATGTTCATCTCAAGTCAGGTGCAATTGAATCGCCCTACCAATATCTTATTGTGTTAGtttttttaaatttaaaattaaCTCAATAGAATGGTATCGCTGGCTGAATAACCCCTTTTGTCTTTCTTCTTAGGCCTCGGAATACAGTCTGTATAAACTTCTCTGTTTTTA

Coding sequence (CDS)

ATGAAAAGAAAAAGGAAATGTACCCTACGGTTCCTCGCACTTCTGTTCACACCCCACCCCACCTTCGCCACAGCGCACACCGCCGCTAACCCACAGGGAATTTTCTTTCTTCTCCCTCGATCTCCAGCGGCAGCTACACCAACTTTTCATTTTGCTGCACACTGTCACCAACCTCACTGCCACGCCCACCTTTTATTTCTAAGGGTTAGTGAGCTCGTTCTTTTGCTAATGGCGTCCAAACTTCTTATTCGTACGGGAAGTTCTTTGATGAATCGATTGCGATTAAGCTCAGCGCATCAGAATAACAGGATTTGGGGTAGCCAAGCTCTGTCCCATGGCCATGGCGTTGAAGTTACTCCGATGCTTTttCCTTCAGTTTCTAAGCACCAGACTGCTCATCCTTTGCAGCAGAATGACACCGAATCGTTGAGGCAGCTCCAATCGGAAGGCATTTTCTTTCCTTTTGGGCTTCCTTCGCTCCGGTtCTTTTtGCCTGACGGAGATGCTTCTTCAACACAAGAACCGATGCTCTTATTTCCTAAAAGGACATTTCAACCTAGCACCATCAGGCGAAAAAGGAATCATGGTTTTTTtGCTCGAAATCACTCGTTTATCTTTGAACAGCAAAGCAACCAAGGGAGGACGGAAAGTTATTGCTCGAAGGATTGCAAAGGGGCGCTCAAGAATAACTGCATAATGTTCATCTCAAGTCAGGTGCAATTGAATCGCCCTACCAATATCTTATTGTGTTAG

Protein sequence

MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHCHAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHGFFARNHSFIFEQQSNQGRTESYCSKDCKGALKNNCIMFISSQVQLNRPTNILLC*
Homology
[Close]
BLAST of Cucsa.340920 vs. TrEMBL
Match: A0A0A0LIB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G847215 PE=3 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 8.0e-112
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1 

Query: 1   MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHC 60
           MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHC
Sbjct: 1   MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHC 60

Query: 61  HAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTP 120
           HAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTP
Sbjct: 61  HAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTP 120

Query: 121 MLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFP 180
           MLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFP
Sbjct: 121 MLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFP 180

Query: 181 KRTFQPSTIRRKRNHGFFAR 201
           KRTFQPSTIRRKRNHGFFAR
Sbjct: 181 KRTFQPSTIRRKRNHGFFAR 200

[Close]
BLAST of Cucsa.340920 vs. TrEMBL
Match: M5XB86_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012999mg PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.1e-34
Identity = 79/124 (63.71%), Postives = 92/124 (74.19%), Query Frame = 1 

Query: 77  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ 136
           MASK LIRTG+SLMNR+        N     Q +SHG  +E+TP LFPS+S   T+  L 
Sbjct: 1   MASKTLIRTGASLMNRILSKPLLHPNPNSNHQIVSHG--LEITPKLFPSLSNFDTSFRLP 60

Query: 137 QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 196
           QND ESL+++  EG+ +PFGLP L FFLPDGD SS+ EPMLLFPKRTFQPSTIRRKRNHG
Sbjct: 61  QNDAESLKRVSYEGLVYPFGLPYLPFFLPDGDDSSSSEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 197 FFAR 201
           FFAR
Sbjct: 121 FFAR 122

[Close]
BLAST of Cucsa.340920 vs. TrEMBL
Match: W9QNR0_9ROSA (50S ribosomal protein L34 OS=Morus notabilis GN=L484_013488 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.7e-32
Identity = 77/124 (62.10%), Postives = 91/124 (73.39%), Query Frame = 1 

Query: 77  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ 136
           MASK LIRTGSSL+NRL  +          S  +SHG  +++TP LFPS+S  Q+   L 
Sbjct: 1   MASKTLIRTGSSLINRLFSNPILHQKTSSNSPIVSHG--LDITPKLFPSLSDFQSPLHLH 60

Query: 137 QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 196
           QND ES+ ++  EG  +P GLPSLRFFLPDGD S ++EPMLLFPKRTFQPSTIRRKRNHG
Sbjct: 61  QNDAESVAKVAIEGFLYPSGLPSLRFFLPDGDDSFSKEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 197 FFAR 201
           FFAR
Sbjct: 121 FFAR 122

[Close]
BLAST of Cucsa.340920 vs. TrEMBL
Match: A0A0D2UJK3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G232600 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.3e-31
Identity = 75/125 (60.00%), Postives = 94/125 (75.20%), Query Frame = 1 

Query: 77  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHP-L 136
           MA+K LIR G+ LMNR+ +  A   N I  ++ L+ G  +++TP LFPS+SK +   P L
Sbjct: 1   MATKSLIRNGAMLMNRVLVKQALNPNPITNNRVLNQG--IQITPQLFPSLSKPKLEIPHL 60

Query: 137 QQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNH 196
            +ND +SL ++ S G  +PFGLPSLRFFLPDGD+SS  EPMLLFPKRT+QPSTIRRKRNH
Sbjct: 61  PRNDVDSLSEVSSTGFLYPFGLPSLRFFLPDGDSSS--EPMLLFPKRTYQPSTIRRKRNH 120

Query: 197 GFFAR 201
           GFFAR
Sbjct: 121 GFFAR 121

[Close]
BLAST of Cucsa.340920 vs. TrEMBL
Match: B9S5W7_RICCO (Structural constituent of ribosome, putative OS=Ricinus communis GN=RCOM_0655450 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.0e-29
Identity = 76/124 (61.29%), Postives = 88/124 (70.97%), Query Frame = 1 

Query: 77  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ 136
           MA+K LIRTG+SLMNR+       N +I         H +E+TP LFPS+SK Q +    
Sbjct: 1   MATKTLIRTGASLMNRMI------NRQILA-------HSLEITPQLFPSISKFQNSLHFP 60

Query: 137 QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 196
           QNDT S+ +L +EG   P GLPSLRFFLPDGD+SS  EPMLLFPKRTFQPS IRRKRNHG
Sbjct: 61  QNDTLSITRLSNEGFLHPSGLPSLRFFLPDGDSSS--EPMLLFPKRTFQPSLIRRKRNHG 109

Query: 197 FFAR 201
           FFAR
Sbjct: 121 FFAR 109

[Close]
BLAST of Cucsa.340920 vs. TAIR10
Match: AT3G13882.2 (AT3G13882.2 Ribosomal protein L34)

HSP 1 Score: 59.7 bits (143), Expect = 3.0e-09
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 1 

Query: 172 TQEPMLLFPKRTFQPSTIRRKRNHGFFAR 201
           + EP+LLFPKRTFQPSTIRRKRNHGFFAR
Sbjct: 150 SSEPLLLFPKRTFQPSTIRRKRNHGFFAR 178


HSP 2 Score: 54.7 bits (130), Expect = 9.6e-08
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 1 

Query: 115 GVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPD 167
           G E+ P  FPS+S  Q++   + NDT SL++L   G  +P GLPSL FFLP+
Sbjct: 48  GQEIPPYFFPSLSNLQSSLISRPNDTASLQELNERGFLYPSGLPSLEFFLPE 99

[Close]
BLAST of Cucsa.340920 vs. NCBI nr
Match: gi|700204663|gb|KGN59796.1| (hypothetical protein Csa_3G847215 [Cucumis sativus])

HSP 1 Score: 411.4 bits (1056), Expect = 1.1e-111
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1 

Query: 1   MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHC 60
           MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHC
Sbjct: 1   MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHC 60

Query: 61  HAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTP 120
           HAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTP
Sbjct: 61  HAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTP 120

Query: 121 MLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFP 180
           MLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFP
Sbjct: 121 MLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFP 180

Query: 181 KRTFQPSTIRRKRNHGFFAR 201
           KRTFQPSTIRRKRNHGFFAR
Sbjct: 181 KRTFQPSTIRRKRNHGFFAR 200

[Close]
BLAST of Cucsa.340920 vs. NCBI nr
Match: gi|449446803|ref|XP_004141160.1| (PREDICTED: uncharacterized protein LOC101210601 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 5.2e-64
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 

Query: 77  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ 136
           MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ
Sbjct: 1   MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ 60

Query: 137 QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 196
           QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG
Sbjct: 61  QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 197 FFAR 201
           FFAR
Sbjct: 121 FFAR 124

[Close]
BLAST of Cucsa.340920 vs. NCBI nr
Match: gi|659093598|ref|XP_008447614.1| (PREDICTED: uncharacterized protein LOC103490028 [Cucumis melo])

HSP 1 Score: 248.1 bits (632), Expect = 1.7e-62
Identity = 121/124 (97.58%), Postives = 122/124 (98.39%), Query Frame = 1 

Query: 77  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ 136
           MASKLLIRTG+S MNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQ AHPLQ
Sbjct: 1   MASKLLIRTGNSFMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQIAHPLQ 60

Query: 137 QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 196
           QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG
Sbjct: 61  QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 197 FFAR 201
           FFAR
Sbjct: 121 FFAR 124

[Close]
BLAST of Cucsa.340920 vs. NCBI nr
Match: gi|595928418|ref|XP_007215126.1| (hypothetical protein PRUPE_ppa012999mg [Prunus persica])

HSP 1 Score: 152.9 bits (385), Expect = 7.4e-34
Identity = 79/124 (63.71%), Postives = 92/124 (74.19%), Query Frame = 1 

Query: 77  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ 136
           MASK LIRTG+SLMNR+        N     Q +SHG  +E+TP LFPS+S   T+  L 
Sbjct: 1   MASKTLIRTGASLMNRILSKPLLHPNPNSNHQIVSHG--LEITPKLFPSLSNFDTSFRLP 60

Query: 137 QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 196
           QND ESL+++  EG+ +PFGLP L FFLPDGD SS+ EPMLLFPKRTFQPSTIRRKRNHG
Sbjct: 61  QNDAESLKRVSYEGLVYPFGLPYLPFFLPDGDDSSSSEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 197 FFAR 201
           FFAR
Sbjct: 121 FFAR 122

[Close]
BLAST of Cucsa.340920 vs. NCBI nr
Match: gi|645244066|ref|XP_008228267.1| (PREDICTED: uncharacterized protein LOC103327681 [Prunus mume])

HSP 1 Score: 149.8 bits (377), Expect = 6.2e-33
Identity = 78/124 (62.90%), Postives = 91/124 (73.39%), Query Frame = 1 

Query: 77  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ 136
           MASK LIRTG+SLMNR+        N     Q +SHG  +E+TP LFPS+S   T+  L 
Sbjct: 1   MASKTLIRTGASLMNRILSKPLLHPNPNSNHQIVSHG--LEITPKLFPSLSNFDTSFRLP 60

Query: 137 QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 196
           QND ESL+++  EG+ +P GLP L FFLPDGD SS+ EPMLLFPKRTFQPSTIRRKRNHG
Sbjct: 61  QNDAESLKRVSYEGLVYPCGLPYLPFFLPDGDDSSSSEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 197 FFAR 201
           FFAR
Sbjct: 121 FFAR 122

The following BLAST results are available for this feature:
BLAST of Cucsa.340920 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIB6_CUCSA8.0e-112100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G847215 PE=3 SV=1[more]
M5XB86_PRUPE5.1e-3463.71Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012999mg PE=3 SV=1[more]
W9QNR0_9ROSA3.7e-3262.1050S ribosomal protein L34 OS=Morus notabilis GN=L484_013488 PE=3 SV=1[more]
A0A0D2UJK3_GOSRA5.3e-3160.00Uncharacterized protein OS=Gossypium raimondii GN=B456_010G232600 PE=3 SV=1[more]
B9S5W7_RICCO1.0e-2961.29Structural constituent of ribosome, putative OS=Ricinus communis GN=RCOM_0655450... [more]
BLAST of Cucsa.340920 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G13882.23.0e-0989.66 Ribosomal protein L34[more]
BLAST of Cucsa.340920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204663|gb|KGN59796.1|1.1e-111100.00hypothetical protein Csa_3G847215 [Cucumis sativus][more]
gi|449446803|ref|XP_004141160.1|5.2e-64100.00PREDICTED: uncharacterized protein LOC101210601 [Cucumis sativus][more]
gi|659093598|ref|XP_008447614.1|1.7e-6297.58PREDICTED: uncharacterized protein LOC103490028 [Cucumis melo][more]
gi|595928418|ref|XP_007215126.1|7.4e-3463.71hypothetical protein PRUPE_ppa012999mg [Prunus persica][more]
gi|645244066|ref|XP_008228267.1|6.2e-3362.90PREDICTED: uncharacterized protein LOC103327681 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000271Ribosomal_L34
IPR020939Ribosomal_L34_CS
IPR000271Ribosomal_L34
IPR020939Ribosomal_L34_CS
IPR000271Ribosomal_L34
IPR020939Ribosomal_L34_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003735structural constituent of ribosome
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005622intracellular
GO:0005840ribosome
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.340920.1Cucsa.340920.1mRNA
Cucsa.340920.2Cucsa.340920.2mRNA
Cucsa.340920.3Cucsa.340920.3mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000271Ribosomal protein L34PRODOMPD003101coord: 181..218
score: 2.0
IPR000271Ribosomal protein L34HAMAPMF_00391Ribosomal_L34coord: 180..223
score: 13
IPR000271Ribosomal protein L34PANTHERPTHR14503FAMILY NOT NAMEDcoord: 82..223
score: 3.1
IPR000271Ribosomal protein L34PFAMPF00468Ribosomal_L34coord: 181..223
score: 4.0
IPR000271Ribosomal protein L34TIGRFAMsTIGR01030TIGR01030coord: 181..223
score: 1.1
IPR020939Ribosomal protein L34, conserved sitePROSITEPS00784RIBOSOMAL_L34coord: 181..200
scor
NoneNo IPR availablePANTHERPTHR14503:SF039S RIBOSOMAL PROTEIN L34, MITOCHONDRIALcoord: 82..223
score: 3.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.340920Cla012589Watermelon (97103) v1cgywmB611
Cucsa.340920ClCG07G013950Watermelon (Charleston Gray)cgywcgB589
Cucsa.340920CSPI03G41190Wild cucumber (PI 183967)cgycpiB504
Cucsa.340920CmaCh14G012470Cucurbita maxima (Rimu)cgycmaB0927
Cucsa.340920CmaCh01G000480Cucurbita maxima (Rimu)cgycmaB0935
Cucsa.340920CmoCh14G012820Cucurbita moschata (Rifu)cgycmoB0927
Cucsa.340920CmoCh01G000520Cucurbita moschata (Rifu)cgycmoB0935
Cucsa.340920Lsi07G005970Bottle gourd (USVL1VR-Ls)cgylsiB556
Cucsa.340920Cp4.1LG02g17350Cucurbita pepo (Zucchini)cgycpeB0886
Cucsa.340920Cp4.1LG03g14580Cucurbita pepo (Zucchini)cgycpeB0889
Cucsa.340920MELO3C013069.2Melon (DHL92) v3.6.1cgymedB557
Cucsa.340920CsaV3_3G043640Cucumber (Chinese Long) v3cgycucB523
Cucsa.340920Cla97C07G140730Watermelon (97103) v2cgywmbB589
Cucsa.340920Bhi01G002142Wax gourdcgywgoB681
Cucsa.340920Carg06422Silver-seed gourdcarcgyB0144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.340920Melon (DHL92) v3.6.1cgymedB554
Cucsa.340920Melon (DHL92) v3.6.1cgymedB561
Cucsa.340920Silver-seed gourdcarcgyB0246
Cucsa.340920Cucumber (Chinese Long) v3cgycucB528
Cucsa.340920Watermelon (97103) v2cgywmbB592
Cucsa.340920Wax gourdcgywgoB691
Cucsa.340920Cucumber (Gy14) v1cgycgyB147
Cucsa.340920Cucurbita maxima (Rimu)cgycmaB0933
Cucsa.340920Cucurbita maxima (Rimu)cgycmaB0946
Cucsa.340920Cucurbita moschata (Rifu)cgycmoB0933
Cucsa.340920Cucurbita moschata (Rifu)cgycmoB0946
Cucsa.340920Wild cucumber (PI 183967)cgycpiB511
Cucsa.340920Cucumber (Chinese Long) v2cgycuB478
Cucsa.340920Cucumber (Chinese Long) v2cgycuB485
Cucsa.340920Melon (DHL92) v3.5.1cgymeB553
Cucsa.340920Melon (DHL92) v3.5.1cgymeB556
Cucsa.340920Melon (DHL92) v3.5.1cgymeB560
Cucsa.340920Watermelon (Charleston Gray)cgywcgB578
Cucsa.340920Watermelon (97103) v1cgywmB608
Cucsa.340920Cucurbita pepo (Zucchini)cgycpeB0878
Cucsa.340920Cucurbita pepo (Zucchini)cgycpeB0882
Cucsa.340920Bottle gourd (USVL1VR-Ls)cgylsiB548